10 20 30 40 50 60 70 80 1TSI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTSE) 19-NOV-92 1TSI
TITLE STRUCTURE OF THE COMPLEX BETWEEN TRYPANOSOMAL TITLE 2 TRIOSEPHOSPHATE ISOMERASE AND N-HYDROXY-4-PHOSPHONO- TITLE 3 BUTANAMIDE: BINDING AT THE ACTIVE SITE DESPITE AN "OPEN" TITLE 4 FLEXIBLE LOOP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: BRUCEI
KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTSE)
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.M.J.VERLINDE
REVDAT 4 24-FEB-09 1TSI 1 VERSN REVDAT 3 01-APR-03 1TSI 1 JRNL REVDAT 2 15-OCT-94 1TSI 1 COMPND REVDAT 1 31-JAN-94 1TSI 0
JRNL AUTH C.L.VERLINDE,C.J.WITMANS,T.PIJNING,K.H.KALK, JRNL AUTH 2 W.G.HOL,M.CALLENS,F.R.OPPERDOES JRNL TITL STRUCTURE OF THE COMPLEX BETWEEN TRYPANOSOMAL JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE AND JRNL TITL 3 N-HYDROXY-4-PHOSPHONO-BUTANAMIDE: BINDING AT THE JRNL TITL 4 ACTIVE SITE DESPITE AN "OPEN" FLEXIBLE LOOP JRNL TITL 5 CONFORMATION. JRNL REF PROTEIN SCI. V. 1 1578 1992 JRNL REFN ISSN 0961-8368 JRNL PMID 1304889
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.K.WIERENGA,M.E.M.NOBLE,J.P.M.POSTMA,H.GROENDIJK, REMARK 1 AUTH 2 K.H.KALK,W.G.J.HOL,F.R.OPPERDOES REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE "OPEN" AND THE REMARK 1 TITL 2 "CLOSED" CONFORMATION OF THE FLEXIBLE LOOP OF REMARK 1 TITL 3 TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE REMARK 1 REF PROTEINS V. 10 33 1991 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.K.WIERENGA,K.H.KALK,W.G.J.HOL REMARK 1 TITL STRUCTURE DETERMINATION OF THE GLYCOSOMAL REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE FROM TRYPANOSOMA BRUCEI REMARK 1 TITL 3 BRUCEI AT 2.4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 198 109 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.K.WIERENGA,W.G.J.HOL,O.MISSET,F.R.OPPERDOES REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC STUDIES OF REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE FROM THE BLOOD PARASITE REMARK 1 TITL 3 TRYPANOSOMA BRUCEI BRUCEI REMARK 1 REF J.MOL.BIOL. V. 178 487 1984 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6530 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 3.200 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TSI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.67000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.67000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE ASYMMETRIC UNIT CONSISTS OF A DIMER. THE TWO REMARK 300 MOLECULES HAVE BEEN ASSIGNED CHAIN INDICATORS *A* AND *B*. REMARK 300 THE CRYSTALS USED FOR THIS STRUCTURE DETERMINATION WERE REMARK 300 GROWN IN THE PRESENCE OF 2.4M AMMONIUM SULFATE (SEE PROTEIN REMARK 300 DATA BANK ENTRY 2TIM), BUT BEFORE DATA COLLECTION THESE REMARK 300 CRYSTALS WERE TRANSFERRED TO A MOTHER LIQUOR WITHOUT REMARK 300 SULFATE. THE ACTIVE SITE OF SUBUNIT *A* CONTAINS THE REMARK 300 INHIBITOR N-HYDROXY-4-PHOSPHONO-BUTANAMIDE REMARK 300 (KI = 0.3 * 10**-3 M). IN THIS ENTRY THE FLEXIBLE LOOP REMARK 300 (LOOP 6) OF EACH SUBUNIT IS IN AN OPEN CONFORMATION.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 SECONDARY STRUCTURE SPECIFICATIONS WERE MADE BY USE OF REMARK 400 PROGRAM *DSSP* OF W. KABSCH AND C. SANDER.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 19 CD OE1 NE2 REMARK 470 GLU B 23 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD LYS A 161 OE1 GLN A 250 2564 1.49 REMARK 500 CE LYS A 161 OE1 GLN A 250 2564 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 23 CD GLU A 23 OE1 0.068 REMARK 500 GLU A 135 CD GLU A 135 OE2 0.068 REMARK 500 GLU A 205 CD GLU A 205 OE1 0.068 REMARK 500 GLU A 241 CD GLU A 241 OE1 0.074 REMARK 500 GLU B 97 CD GLU B 97 OE2 0.072 REMARK 500 GLU B 133 CD GLU B 133 OE2 0.079 REMARK 500 GLU B 185 CD GLU B 185 OE1 0.072 REMARK 500 GLU B 205 CD GLU B 205 OE1 0.067 REMARK 500 GLU B 241 CD GLU B 241 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 14 CA - CB - SG ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 101 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 TYR A 101 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 101 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 THR A 105 CA - CB - CG2 ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 VAL A 117 CA - CB - CG1 ANGL. DEV. = -10.3 DEGREES REMARK 500 MET A 122 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 ARG A 134 CD - NE - CZ ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ALA A 140 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 GLU A 167 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ALA A 188 CB - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 ALA A 188 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 191 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 THR A 221 CA - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP A 227 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 244 CB - CG - OD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 244 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 26 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR B 101 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TYR B 101 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 THR B 145 CA - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ALA B 188 CB - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 203 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 207 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 TYR B 210 CB - CA - C ANGL. DEV. = 15.5 DEGREES REMARK 500 ASP B 227 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 THR B 249 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -137.14 52.51 REMARK 500 SER A 17 146.93 -170.52 REMARK 500 ASN A 66 175.45 172.34 REMARK 500 ALA A 67 171.49 177.38 REMARK 500 PHE A 74 89.92 -154.75 REMARK 500 HIS A 95 129.74 -30.79 REMARK 500 GLU A 104 76.02 -58.33 REMARK 500 ILE A 124 67.98 -115.73 REMARK 500 GLU A 133 -74.66 -62.03 REMARK 500 ARG A 134 -62.54 -23.71 REMARK 500 TRP A 159 -2.83 -54.18 REMARK 500 SER A 192 -74.04 -56.45 REMARK 500 ALA A 200 5.04 -65.15 REMARK 500 ARG A 203 -66.60 -26.93 REMARK 500 LEU A 206 136.90 -37.66 REMARK 500 GLN A 224 4.34 -67.59 REMARK 500 ASN A 229 60.22 -111.63 REMARK 500 GLU A 241 -9.15 -48.61 REMARK 500 ALA A 248 4.14 -62.98 REMARK 500 PRO B 4 -158.49 -76.22 REMARK 500 LYS B 13 -137.33 51.77 REMARK 500 CYS B 14 62.75 -100.76 REMARK 500 SER B 30 34.21 -87.86 REMARK 500 ALA B 67 -179.04 -177.34 REMARK 500 THR B 75 94.51 -39.71 REMARK 500 VAL B 142 -74.11 -51.87 REMARK 500 ILE B 172 98.05 -65.88 REMARK 500 THR B 174 18.06 -147.62 REMARK 500 ILE B 198 -71.26 -109.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEETS PRESENTED AS *A* AND *B* ON SHEET RECORDS BELOW REMARK 700 ARE ACTUALLY EIGHT-STRANDED BETA-BARRELS. THESE ARE REMARK 700 REPRESENTED BY NINE-STRANDED SHEETS IN WHICH THE FIRST AND REMARK 700 LAST STRANDS ARE IDENTICAL.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PB A 600
DBREF 1TSI A 1 250 UNP P04789 TPIS_TRYBB 1 250 DBREF 1TSI B 1 250 UNP P04789 TPIS_TRYBB 1 250
SEQRES 1 A 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 A 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 A 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 A 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 A 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 A 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 A 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 A 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 A 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 A 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 A 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 A 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 A 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 A 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 A 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 A 250 SER LYS ILE GLY ALA ASP VAL ARG GLY GLU LEU ARG ILE SEQRES 17 A 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 A 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 A 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 A 250 ALA THR GLN SEQRES 1 B 250 MET SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS SEQRES 2 B 250 CYS ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP SEQRES 3 B 250 LEU PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS SEQRES 4 B 250 VAL VAL ALA SER THR PHE VAL HIS LEU ALA MET THR LYS SEQRES 5 B 250 GLU ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN SEQRES 6 B 250 ASN ALA ILE ALA LYS SER GLY ALA PHE THR GLY GLU VAL SEQRES 7 B 250 SER LEU PRO ILE LEU LYS ASP PHE GLY VAL ASN TRP ILE SEQRES 8 B 250 VAL LEU GLY HIS SER GLU ARG ARG ALA TYR TYR GLY GLU SEQRES 9 B 250 THR ASN GLU ILE VAL ALA ASP LYS VAL ALA ALA ALA VAL SEQRES 10 B 250 ALA SER GLY PHE MET VAL ILE ALA CYS ILE GLY GLU THR SEQRES 11 B 250 LEU GLN GLU ARG GLU SER GLY ARG THR ALA VAL VAL VAL SEQRES 12 B 250 LEU THR GLN ILE ALA ALA ILE ALA LYS LYS LEU LYS LYS SEQRES 13 B 250 ALA ASP TRP ALA LYS VAL VAL ILE ALA TYR GLU PRO VAL SEQRES 14 B 250 TRP ALA ILE GLY THR GLY LYS VAL ALA THR PRO GLN GLN SEQRES 15 B 250 ALA GLN GLU ALA HIS ALA LEU ILE ARG SER TRP VAL SER SEQRES 16 B 250 SER LYS ILE GLY ALA ASP VAL ARG GLY GLU LEU ARG ILE SEQRES 17 B 250 LEU TYR GLY GLY SER VAL ASN GLY LYS ASN ALA ARG THR SEQRES 18 B 250 LEU TYR GLN GLN ARG ASP VAL ASN GLY PHE LEU VAL GLY SEQRES 19 B 250 GLY ALA SER LEU LYS PRO GLU PHE VAL ASP ILE ILE LYS SEQRES 20 B 250 ALA THR GLN
HET 4PB A 600 11
HETNAM 4PB N-HYDROXY-4-PHOSPHONO-BUTANAMIDE
FORMUL 3 4PB C4 H8 N O5 P 2- FORMUL 4 HOH *53(H2 O)
HELIX 1 1A GLN A 18 SER A 30 1 13 HELIX 2 2A LEU A 48 ARG A 54 1 7 HELIX 3 3A LEU A 80 ASP A 85 1 6 HELIX 4 4FA GLU A 97 TYR A 101 1 5 HELIX 5 4A ASN A 106 ALA A 118 1 13 HELIX 6 5FA LEU A 131 GLU A 135 1 5 HELIX 7 5A THR A 139 LYS A 152 1 14 HELIX 8 6A PRO A 180 LYS A 197 1 18 HELIX 9 7BA ALA A 200 GLU A 205 1 6 HELIX 10 7A GLY A 216 TYR A 223 1 8 HELIX 11 8A PHE A 242 LYS A 247 1 6 HELIX 12 1B GLN B 18 ASN B 29 1 12 HELIX 13 2B LEU B 48 ARG B 54 1 7 HELIX 14 3B LEU B 80 ASP B 85 1 6 HELIX 15 4FB SER B 96 TYR B 101 1 6 HELIX 16 4B ASN B 106 ALA B 118 1 13 HELIX 17 5FB LEU B 131 GLU B 135 1 5 HELIX 18 5B THR B 139 ALA B 151 1 13 HELIX 19 6B PRO B 180 LYS B 197 1 18 HELIX 20 7BB ALA B 200 GLU B 205 1 6 HELIX 21 7B ALA B 219 GLN B 224 1 6 HELIX 22 8B PHE B 242 LYS B 247 1 6
SHEET 1 A 9 ILE A 7 ASN A 11 0 SHEET 2 A 9 GLN A 38 SER A 43 1 SHEET 3 A 9 PHE A 60 ALA A 64 1 SHEET 4 A 9 TRP A 90 LEU A 93 1 SHEET 5 A 9 MET A 122 ILE A 127 1 SHEET 6 A 9 VAL A 162 TYR A 166 1 SHEET 7 A 9 ARG A 207 TYR A 210 1 SHEET 8 A 9 GLY A 230 VAL A 233 1 SHEET 9 A 9 ILE A 7 ASN A 11 1 SHEET 1 B 9 ILE B 7 ASN B 11 0 SHEET 2 B 9 GLN B 38 ALA B 42 1 SHEET 3 B 9 PHE B 60 ALA B 64 1 SHEET 4 B 9 TRP B 90 LEU B 93 1 SHEET 5 B 9 MET B 122 ILE B 127 1 SHEET 6 B 9 VAL B 162 TYR B 166 1 SHEET 7 B 9 ILE B 208 TYR B 210 1 SHEET 8 B 9 GLY B 230 VAL B 233 1 SHEET 9 B 9 ILE A 7 ASN A 11 1
SITE 1 AC1 11 ASN A 11 LYS A 13 HIS A 95 GLU A 97 SITE 2 AC1 11 GLU A 167 ILE A 172 GLY A 211 SER A 213 SITE 3 AC1 11 GLY A 235 HOH A 640 HOH A 652
CRYST1 113.340 97.150 46.450 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008823 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010293 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021529 0.00000