10 20 30 40 50 60 70 80 1TSD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE (METHYLTRANSFERASE) 15-AUG-95 1TSD
TITLE THYMIDYLATE SYNTHASE COMPLEX WITH 2'-DEOXYURIDINE 5'- TITLE 2 MONOPHOSPHATE (DUMP) AND FOLATE ANALOG 1843U89
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS DUMP, 1843U89, TRANSFERASE (METHYLTRANSFERASE)
EXPDTA X-RAY DIFFRACTION
AUTHOR A.WEICHSEL,W.R.MONTFORT
REVDAT 3 24-FEB-09 1TSD 1 VERSN REVDAT 2 01-APR-03 1TSD 1 JRNL REVDAT 1 29-JAN-96 1TSD 0
JRNL AUTH A.WEICHSEL,W.R.MONTFORT JRNL TITL LIGAND-INDUCED DISTORTION OF AN ACTIVE SITE IN JRNL TITL 2 THYMIDYLATE SYNTHASE UPON BINDING ANTICANCER DRUG JRNL TITL 3 1843U89. JRNL REF NAT.STRUCT.BIOL. V. 2 1095 1995 JRNL REFN ISSN 1072-8368 JRNL PMID 8846221 JRNL DOI 10.1038/NSB1295-1095
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WEICHSEL,W.R.MONTFORT,J.CIESLA,F.MALEY REMARK 1 TITL PROMOTION OF PURINE NUCLEOTIDE BINDING TO REMARK 1 TITL 2 THYMIDYLATE SYNTHASE BY A POTENT FOLATE ANALOGUE REMARK 1 TITL 3 INHIBITOR, 1843U89 REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 92 3493 1995 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.R.MONTFORT,K.M.PERRY,E.B.FAUMAN,J.S.FINER-MOORE, REMARK 1 AUTH 2 G.F.MALEY,L.HARDY,F.MALEY,R.M.STROUD REMARK 1 TITL STRUCTURE, MULTIPLE SITE BINDING, AND SEGMENTAL REMARK 1 TITL 2 ACCOMMODATION IN THYMIDYLATE SYNTHASE ON BINDING REMARK 1 TITL 3 DUMP AND AN ANTI-FOLATE REMARK 1 REF BIOCHEMISTRY V. 29 6964 1990 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GPRLSA REMARK 3 AUTHORS : FUREY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.045 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.044 ; 0.035 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.291 ; 0.200 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.210 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.221 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.196 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.800 ; 5.000 REMARK 3 STAGGERED (DEGREES) : 21.000; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.780 ; 1.750 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.720 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.760 ; 15.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.730 ; 2.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TSD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES, PROCOR, FBSCALE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.12500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.12500 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 50 S2 BME A 265 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU A 27 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 SER A 28 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 GLU A 74 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 VAL A 77 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 VAL A 130 CA - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 139 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 PHE A 149 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 ALA A 155 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 198 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU A 208 CA - CB - CG ANGL. DEV. = 19.4 DEGREES REMARK 500 LEU A 208 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 THR A 216 CA - CB - CG2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 227 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LYS A 259 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 ASP B 13 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 SER B 28 N - CA - CB ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU B 38 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS B 48 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG B 49 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ILE B 56 CA - CB - CG2 ANGL. DEV. = 16.1 DEGREES REMARK 500 ASP B 66 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP B 81 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 81 CB - CG - OD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 107 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 110 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 122 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 126 NH1 - CZ - NH2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 VAL B 130 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 VAL B 130 CA - CB - CG1 ANGL. DEV. = 13.4 DEGREES REMARK 500 ALA B 144 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 69 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 94 -66.58 -23.43 REMARK 500 ALA A 100 63.68 -153.85 REMARK 500 ASP A 105 31.51 -95.91 REMARK 500 ASP A 122 63.90 -155.46 REMARK 500 GLU B 74 5.31 -61.76 REMARK 500 ASP B 85 -164.57 -73.86 REMARK 500 TYR B 94 -77.31 -13.42 REMARK 500 ALA B 100 69.09 -152.13 REMARK 500 ASP B 105 35.60 -99.62 REMARK 500 ASP B 122 61.85 -156.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.08 SIDE_CHAIN REMARK 500 ARG B 21 0.10 SIDE_CHAIN REMARK 500 ARG B 222 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 11 24.8 L L OUTSIDE RANGE REMARK 500 THR A 47 23.7 L L OUTSIDE RANGE REMARK 500 ASN A 76 24.5 L L OUTSIDE RANGE REMARK 500 THR A 113 20.3 L L OUTSIDE RANGE REMARK 500 PHE A 149 46.7 L L OUTSIDE RANGE REMARK 500 LEU A 174 22.2 L L OUTSIDE RANGE REMARK 500 TYR A 181 24.3 L L OUTSIDE RANGE REMARK 500 THR A 216 20.1 L L OUTSIDE RANGE REMARK 500 LYS A 259 24.2 L L OUTSIDE RANGE REMARK 500 THR B 47 22.2 L L OUTSIDE RANGE REMARK 500 ILE B 56 17.7 L L OUTSIDE RANGE REMARK 500 GLN B 111 24.5 L L OUTSIDE RANGE REMARK 500 VAL B 130 17.2 L L OUTSIDE RANGE REMARK 500 PHE B 149 45.9 L L OUTSIDE RANGE REMARK 500 LEU B 174 21.5 L L OUTSIDE RANGE REMARK 500 MET B 213 23.9 L L OUTSIDE RANGE REMARK 500 ASP B 241 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 288 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH B 399 DISTANCE = 5.02 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 265 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 266 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 267 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F89 A 268 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 265 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F89 B 266
DBREF 1TSD A 1 264 UNP P00470 TYSY_ECOLI 1 264 DBREF 1TSD B 1 264 UNP P00470 TYSY_ECOLI 1 264
SEQRES 1 A 265 FMT MET LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU SEQRES 2 A 265 ASP GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY SEQRES 3 A 265 THR LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU SEQRES 4 A 265 GLN ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS SEQRES 5 A 265 LEU ARG SER ILE ILE HIS GLU LEU LEU TRP PHE LEU GLN SEQRES 6 A 265 GLY ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL SEQRES 7 A 265 THR ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU SEQRES 8 A 265 GLY PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR SEQRES 9 A 265 PRO ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU SEQRES 10 A 265 ASN GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 A 265 VAL SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA SEQRES 12 A 265 LEU ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 A 265 ASP GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS SEQRES 14 A 265 ASP VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR SEQRES 15 A 265 ALA LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU SEQRES 16 A 265 GLU VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS SEQRES 17 A 265 LEU TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SEQRES 18 A 265 SER ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS SEQRES 19 A 265 ARG LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP SEQRES 20 A 265 PHE GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS SEQRES 21 A 265 ALA PRO VAL ALA ILE SEQRES 1 B 265 FMT MET LYS GLN TYR LEU GLU LEU MET GLN LYS VAL LEU SEQRES 2 B 265 ASP GLU GLY THR GLN LYS ASN ASP ARG THR GLY THR GLY SEQRES 3 B 265 THR LEU SER ILE PHE GLY HIS GLN MET ARG PHE ASN LEU SEQRES 4 B 265 GLN ASP GLY PHE PRO LEU VAL THR THR LYS ARG CYS HIS SEQRES 5 B 265 LEU ARG SER ILE ILE HIS GLU LEU LEU TRP PHE LEU GLN SEQRES 6 B 265 GLY ASP THR ASN ILE ALA TYR LEU HIS GLU ASN ASN VAL SEQRES 7 B 265 THR ILE TRP ASP GLU TRP ALA ASP GLU ASN GLY ASP LEU SEQRES 8 B 265 GLY PRO VAL TYR GLY LYS GLN TRP ARG ALA TRP PRO THR SEQRES 9 B 265 PRO ASP GLY ARG HIS ILE ASP GLN ILE THR THR VAL LEU SEQRES 10 B 265 ASN GLN LEU LYS ASN ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 B 265 VAL SER ALA TRP ASN VAL GLY GLU LEU ASP LYS MET ALA SEQRES 12 B 265 LEU ALA PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 B 265 ASP GLY LYS LEU SER CYS GLN LEU TYR GLN ARG SER CYS SEQRES 14 B 265 ASP VAL PHE LEU GLY LEU PRO PHE ASN ILE ALA SER TYR SEQRES 15 B 265 ALA LEU LEU VAL HIS MET MET ALA GLN GLN CYS ASP LEU SEQRES 16 B 265 GLU VAL GLY ASP PHE VAL TRP THR GLY GLY ASP THR HIS SEQRES 17 B 265 LEU TYR SER ASN HIS MET ASP GLN THR HIS LEU GLN LEU SEQRES 18 B 265 SER ARG GLU PRO ARG PRO LEU PRO LYS LEU ILE ILE LYS SEQRES 19 B 265 ARG LYS PRO GLU SER ILE PHE ASP TYR ARG PHE GLU ASP SEQRES 20 B 265 PHE GLU ILE GLU GLY TYR ASP PRO HIS PRO GLY ILE LYS SEQRES 21 B 265 ALA PRO VAL ALA ILE
HET FMT A 0 3 HET FMT B 0 3 HET BME A 265 4 HET BME A 266 4 HET UMP A 267 20 HET F89 A 268 37 HET UMP B 265 20 HET F89 B 266 37
HETNAM FMT FORMIC ACID HETNAM BME BETA-MERCAPTOETHANOL HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM F89 S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F) HETNAM 2 F89 QUINAZOLIN-9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL) HETNAM 3 F89 GLUTARIC ACID
HETSYN UMP DUMP HETSYN F89 FOLATE ANALOG 1843U89
FORMUL 1 FMT 2(C H2 O2) FORMUL 3 BME 2(C2 H6 O S) FORMUL 5 UMP 2(C9 H13 N2 O8 P) FORMUL 6 F89 2(C27 H24 N4 O6) FORMUL 9 HOH *188(H2 O)
HELIX 1 1 LYS A 2 GLU A 14 1 13 HELIX 2 2 LEU A 38 ASP A 40 5 3 HELIX 3 3 LEU A 52 GLN A 64 1 13 HELIX 4 4 ALA A 70 GLU A 74 1 5 HELIX 5 5 ILE A 79 TRP A 83 5 5 HELIX 6 6 TYR A 94 ARG A 99 1 6 HELIX 7 7 GLN A 111 ASN A 121 1 11 HELIX 8 8 VAL A 135 LYS A 140 5 6 HELIX 9 9 LEU A 174 GLN A 191 1 18 HELIX 10 10 SER A 210 SER A 221 5 12 HELIX 11 11 ILE A 239 ASP A 241 5 3 HELIX 12 12 PHE A 244 ASP A 246 5 3 HELIX 13 13 LYS B 2 GLU B 14 1 13 HELIX 14 14 LEU B 38 ASP B 40 5 3 HELIX 15 15 LEU B 52 GLN B 64 1 13 HELIX 16 16 ALA B 70 ASN B 75 1 6 HELIX 17 17 ILE B 79 GLU B 82 5 4 HELIX 18 18 TYR B 94 ARG B 99 1 6 HELIX 19 19 GLN B 111 ASN B 121 1 11 HELIX 20 20 VAL B 135 LYS B 140 5 6 HELIX 21 21 GLY B 173 CYS B 192 1 20 HELIX 22 22 MET B 213 SER B 221 1 9 HELIX 23 23 ILE B 239 ASP B 241 5 3 HELIX 24 24 PHE B 244 ASP B 246 5 3
SHEET 1 A 4 THR A 16 LYS A 18 0 SHEET 2 A 4 THR A 26 PHE A 30 -1 N SER A 28 O THR A 16 SHEET 3 A 4 ASP A 205 TYR A 209 -1 N LEU A 208 O LEU A 27 SHEET 4 A 4 SER A 167 ASP A 169 1 N CYS A 168 O ASP A 205 SHEET 1 B 5 HIS A 32 ASN A 37 0 SHEET 2 B 5 ASP A 198 GLY A 203 -1 N GLY A 203 O HIS A 32 SHEET 3 B 5 LYS A 158 GLN A 165 1 N CYS A 161 O VAL A 200 SHEET 4 B 5 HIS A 147 ALA A 155 -1 N ALA A 155 O LYS A 158 SHEET 5 B 5 ILE A 129 SER A 131 -1 N VAL A 130 O PHE A 150 SHEET 1 C 2 LYS A 229 ILE A 232 0 SHEET 2 C 2 PHE A 247 GLU A 250 -1 N GLU A 250 O LYS A 229 SHEET 1 D 4 THR B 16 LYS B 18 0 SHEET 2 D 4 THR B 26 PHE B 30 -1 N SER B 28 O THR B 16 SHEET 3 D 4 ASP B 205 TYR B 209 -1 N LEU B 208 O LEU B 27 SHEET 4 D 4 SER B 167 ASP B 169 1 N CYS B 168 O ASP B 205 SHEET 1 E 5 HIS B 32 ASN B 37 0 SHEET 2 E 5 ASP B 198 GLY B 203 -1 N GLY B 203 O HIS B 32 SHEET 3 E 5 LYS B 158 GLN B 165 1 N CYS B 161 O VAL B 200 SHEET 4 E 5 HIS B 147 ALA B 155 -1 N ALA B 155 O LYS B 158 SHEET 5 E 5 ILE B 128 SER B 131 -1 N VAL B 130 O PHE B 150 SHEET 1 F 2 LYS B 229 ILE B 232 0 SHEET 2 F 2 PHE B 247 GLU B 250 -1 N GLU B 250 O LYS B 229
LINK C FMT A 0 N MET A 1 1555 1555 1.33 LINK C FMT B 0 N MET B 1 1555 1555 1.36
SITE 1 AC1 5 LYS A 48 CYS A 50 HIS A 51 PHE A 176 SITE 2 AC1 5 F89 A 268 SITE 1 AC2 4 LEU A 116 LYS A 120 GLN A 191 CYS A 192 SITE 1 AC3 15 ARG A 21 CYS A 146 HIS A 147 GLN A 165 SITE 2 AC3 15 ARG A 166 SER A 167 ASP A 169 ASN A 177 SITE 3 AC3 15 HIS A 207 TYR A 209 F89 A 268 HOH A 276 SITE 4 AC3 15 HOH A 418 ARG B 126 ARG B 127 SITE 1 AC4 13 SER A 54 GLU A 58 THR A 78 ILE A 79 SITE 2 AC4 13 TRP A 80 TRP A 83 ASP A 169 GLY A 173 SITE 3 AC4 13 PHE A 176 TYR A 209 ALA A 263 BME A 265 SITE 4 AC4 13 UMP A 267 SITE 1 AC5 16 ARG A 126 ARG A 127 ARG B 21 CYS B 146 SITE 2 AC5 16 HIS B 147 GLN B 165 ARG B 166 SER B 167 SITE 3 AC5 16 CYS B 168 ASP B 169 ASN B 177 HIS B 207 SITE 4 AC5 16 TYR B 209 F89 B 266 HOH B 287 HOH B 300 SITE 1 AC6 13 SER B 54 GLU B 58 VAL B 77 ILE B 79 SITE 2 AC6 13 TRP B 80 TRP B 83 ASP B 169 GLY B 173 SITE 3 AC6 13 PHE B 176 TYR B 209 ALA B 263 UMP B 265 SITE 4 AC6 13 HOH B 283
CRYST1 127.520 127.520 68.250 90.00 90.00 120.00 P 63 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007842 0.004528 0.000000 0.00000
SCALE2 0.000000 0.009055 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014652 0.00000