1TQR - Header Asymmetric Unit

HEADER DNA 18-JUN-04 1TQR

TITLE NMR STRUCTURE OF DNA 17-MER GGAAAATCTCTAGCAGT CORRESPONDING TITLE 2 TO THE EXTREMITY OF THE U5 LTR OF THE HIV-1 GENOME

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA HIV-1 U5 LTR EXTREMITY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA HIV-1 U5 LTR EXTREMITY; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CLASSICAL PHOSPHORAMIDITE CHEMISTRY; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: CLASSICAL PHOSPHORAMIDITE CHEMISTRY

KEYWDS DOUBLE HELIX, DNA

EXPDTA SOLUTION NMR

NUMMDL 9

AUTHOR J.G.RENISIO,S.COSQUER,I.CHERRAK,S.EL ANTRI,O.MAUFFRET, AUTHOR 2 S.FERMANDJIAN

REVDAT 2 24-FEB-09 1TQR 1 VERSN REVDAT 1 19-APR-05 1TQR 0

JRNL AUTH J.G.RENISIO,S.COSQUER,I.CHERRAK,S.EL ANTRI, JRNL AUTH 2 O.MAUFFRET,S.FERMANDJIAN JRNL TITL PRE-ORGANIZED STRUCTURE OF VIRAL DNA AT THE JRNL TITL 2 BINDING-PROCESSING SITE OF HIV-1 INTEGRASE JRNL REF NUCLEIC ACIDS RES. V. 33 1970 2005 JRNL REFN ISSN 0305-1048 JRNL PMID 15814814 JRNL DOI 10.1093/NAR/GKI346

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9A REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN THE FIRST STAGE THE CLASSICAL REMARK 3 CONSTRAINTS WERE USED WITH TAD AT HIGH TEMPERATURE, IN A REMARK 3 SECOND STAGE THE RDC WERE GRADUALLY ADDED WITH TAD AT LOW REMARK 3 TEMPERATURE (200K)

REMARK 4 REMARK 4 1TQR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB022848.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : PHOSPHTE BUFFER PH6.7; PLUS REMARK 210 PHAGE PF1 12MG/ML REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_NOESY, 2D_TOCSY, DQF-COSY, REMARK 210 2D_HSQC_1H-13C REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 INCLUDING CLASSICAL AND RDC REMARK 210 CONSTRAINTS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1TQR A 1 17 PDB 1TQR 1TQR 1 17 DBREF 1TQR B 18 34 PDB 1TQR 1TQR 18 34

SEQRES 1 A 17 DG DG DA DA DA DA DT DC DT DC DT DA DG SEQRES 2 A 17 DC DA DG DT SEQRES 1 B 17 DA DC DT DG DC DT DA DG DA DG DA DT DT SEQRES 2 B 17 DT DT DC DC

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000