10 20 30 40 50 60 70 80 1TP4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA REPAIR 15-JUN-04 1TP4
TITLE SOLUTION STRUCTURE OF THE XPC BINDING DOMAIN OF HHR23A TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: XPC BINDING DOMAIN; COMPND 5 SYNONYM: HHR23A; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAD23A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T
KEYWDS DNA REPAIR, NER, XPC, RAD23
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR M.KAMIONKA,J.FEIGON
REVDAT 2 24-FEB-09 1TP4 1 VERSN REVDAT 1 28-SEP-04 1TP4 0
JRNL AUTH M.KAMIONKA,J.FEIGON JRNL TITL STRUCTURE OF THE XPC BINDING DOMAIN OF HHR23A JRNL TITL 2 REVEALS HYDROPHOBIC PATCHES FOR PROTEIN INTERACTION JRNL REF PROTEIN SCI. V. 13 2370 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15322280 JRNL DOI 10.1110/PS.04824304
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 917 NON-REDUNDANT NOE-DERIVED DISTANCE CONSTRAINTS, 82 REMARK 3 DIHEDRAL ANGLE RESTRAINTS AND 42 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1TP4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB022810.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE, 122MM REMARK 210 SODIUM CHLORIDE, 0.05% SODIUM REMARK 210 AZIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM XPCB U-15N,13C, 20MM REMARK 210 SODIUM PHOSPHATE, 122MM SODIUM REMARK 210 CHLORIDE, 0.05% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, FELIX 2000, X- REMARK 210 PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 SER A 222 REMARK 465 ALA A 223 REMARK 465 THR A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 GLU A 229 REMARK 465 GLY A 289 REMARK 465 GLU A 290 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 ASP A 293 REMARK 465 ILE A 294 REMARK 465 SER A 295 REMARK 465 ASP A 296 REMARK 465 VAL A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 VAL A 301 REMARK 465 GLY A 302 REMARK 465 ALA A 303 REMARK 465 ILE A 304 REMARK 465 GLY A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 ALA A 308 REMARK 465 PRO A 309 REMARK 465 GLN A 310 REMARK 465 MET A 311 REMARK 465 ASN A 312 REMARK 465 TYR A 313 REMARK 465 ILE A 314 REMARK 465 GLN A 315 REMARK 465 VAL A 316 REMARK 465 THR A 317
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 251 71.40 -101.70 REMARK 500 1 PRO A 252 36.90 -73.80 REMARK 500 1 LEU A 255 171.34 50.65 REMARK 500 1 LEU A 258 -37.56 -36.76 REMARK 500 1 GLU A 265 -70.09 -38.12 REMARK 500 1 SER A 274 -37.70 -39.03 REMARK 500 1 HIS A 276 -144.02 -76.84 REMARK 500 1 GLN A 277 -67.19 86.57 REMARK 500 1 GLU A 286 121.74 -34.50 REMARK 500 2 PRO A 252 30.52 -76.88 REMARK 500 2 LEU A 255 171.65 50.84 REMARK 500 2 HIS A 276 37.65 -92.78 REMARK 500 2 ASN A 285 35.41 -90.31 REMARK 500 2 GLU A 286 91.59 -30.81 REMARK 500 3 PRO A 252 29.88 -77.48 REMARK 500 3 LEU A 255 177.02 49.22 REMARK 500 3 PRO A 256 55.71 -67.64 REMARK 500 3 GLU A 265 -71.33 -38.24 REMARK 500 3 ARG A 275 -85.45 -53.67 REMARK 500 3 HIS A 276 48.89 -82.32 REMARK 500 3 ASN A 285 37.11 -89.14 REMARK 500 3 GLU A 286 89.19 -30.63 REMARK 500 4 PRO A 252 33.50 -75.98 REMARK 500 4 LEU A 255 128.78 60.62 REMARK 500 4 PRO A 256 82.74 -38.08 REMARK 500 4 SER A 274 -31.17 -36.87 REMARK 500 4 LEU A 284 -36.85 -38.63 REMARK 500 4 ASN A 285 36.31 -89.74 REMARK 500 5 PRO A 252 30.85 -76.48 REMARK 500 5 LEU A 255 174.26 50.06 REMARK 500 5 GLU A 265 -71.64 -42.97 REMARK 500 5 ARG A 275 -71.52 -53.69 REMARK 500 5 ASN A 285 38.30 -90.99 REMARK 500 5 GLU A 286 -55.95 -26.79 REMARK 500 6 ARG A 245 -28.72 -38.62 REMARK 500 6 PRO A 252 28.24 -76.37 REMARK 500 6 LEU A 255 133.92 61.24 REMARK 500 6 PRO A 256 57.40 -61.52 REMARK 500 6 ASN A 285 32.64 -89.94 REMARK 500 7 PRO A 252 32.58 -75.51 REMARK 500 7 LEU A 255 170.10 51.86 REMARK 500 7 ASN A 285 32.24 -89.79 REMARK 500 7 GLU A 286 102.46 -32.60 REMARK 500 8 PRO A 252 34.01 -75.62 REMARK 500 8 LEU A 255 171.01 51.47 REMARK 500 8 LEU A 284 -37.43 -39.92 REMARK 500 8 ASN A 285 35.46 -89.02 REMARK 500 8 GLU A 286 106.64 -33.15 REMARK 500 9 PRO A 231 30.82 -86.62 REMARK 500 9 PRO A 252 30.68 -76.59 REMARK 500 9 LEU A 255 166.13 52.95 REMARK 500 9 PRO A 256 57.57 -65.91 REMARK 500 9 HIS A 276 30.68 -98.78 REMARK 500 9 ASN A 285 37.39 -89.69 REMARK 500 9 GLU A 286 91.28 -29.84 REMARK 500 10 ARG A 245 -31.45 -36.90 REMARK 500 10 PRO A 252 33.37 -75.77 REMARK 500 10 LEU A 255 173.48 50.54 REMARK 500 10 ASN A 285 36.97 -91.09 REMARK 500 10 GLU A 286 -56.96 -27.78 REMARK 500 11 PRO A 252 20.02 -74.82 REMARK 500 11 LEU A 255 134.45 61.21 REMARK 500 11 PRO A 256 57.55 -60.35 REMARK 500 11 HIS A 276 53.89 -96.18 REMARK 500 11 ASN A 285 40.47 -89.67 REMARK 500 11 GLU A 286 149.87 -29.52 REMARK 500 11 PRO A 287 113.23 -38.13 REMARK 500 12 ARG A 245 -29.86 -37.38 REMARK 500 12 PRO A 252 26.18 -78.77 REMARK 500 12 LEU A 255 129.92 60.82 REMARK 500 12 PRO A 256 69.85 -54.27 REMARK 500 12 ASN A 285 38.07 -90.40 REMARK 500 12 GLU A 286 -58.97 -27.48 REMARK 500 12 PRO A 287 102.92 -50.41 REMARK 500 13 PRO A 239 34.34 -81.47 REMARK 500 13 ARG A 245 -28.62 -39.66 REMARK 500 13 PRO A 252 33.97 -75.80 REMARK 500 13 LEU A 255 175.82 50.38 REMARK 500 13 PRO A 256 54.62 -68.94 REMARK 500 13 GLU A 265 -71.48 -38.03 REMARK 500 13 ASN A 285 36.17 -90.55 REMARK 500 13 GLU A 286 130.44 -28.13 REMARK 500 14 LEU A 232 22.69 81.64 REMARK 500 14 PRO A 252 32.59 -76.45 REMARK 500 14 LEU A 255 172.08 51.33 REMARK 500 14 PRO A 256 41.79 -80.36 REMARK 500 14 ASN A 285 37.14 -88.75 REMARK 500 14 GLU A 286 131.24 -28.37 REMARK 500 15 PRO A 252 31.15 -76.67 REMARK 500 15 LEU A 255 176.10 49.67 REMARK 500 15 ASN A 285 33.62 -99.16 REMARK 500 15 GLU A 286 120.78 -27.55 REMARK 500 16 PRO A 231 -17.09 -49.18 REMARK 500 16 LEU A 232 33.18 94.55 REMARK 500 16 PRO A 252 28.77 -77.27 REMARK 500 16 LEU A 255 128.19 60.59 REMARK 500 16 PRO A 256 81.41 -44.75 REMARK 500 16 ASN A 285 32.04 -88.77 REMARK 500 16 GLU A 286 114.13 -31.38 REMARK 500 17 PRO A 252 48.30 -67.34 REMARK 500 17 LEU A 255 168.53 52.63 REMARK 500 17 PRO A 256 41.30 -81.57 REMARK 500 17 LEU A 258 -38.51 -37.90 REMARK 500 17 LEU A 284 -39.70 -37.27 REMARK 500 17 ASN A 285 37.00 -89.17 REMARK 500 17 GLU A 286 119.20 -30.55 REMARK 500 18 PRO A 252 25.59 -78.42 REMARK 500 18 LEU A 255 157.41 56.52 REMARK 500 18 PRO A 256 56.56 -62.23 REMARK 500 18 GLU A 286 111.67 -35.70 REMARK 500 19 PRO A 231 32.83 -85.31 REMARK 500 19 PRO A 252 34.29 -74.66 REMARK 500 19 LEU A 255 170.96 51.62 REMARK 500 19 ASN A 285 37.84 -90.49 REMARK 500 19 GLU A 286 150.50 -30.03 REMARK 500 20 ARG A 245 -30.63 -37.25 REMARK 500 20 PRO A 252 35.06 -74.50 REMARK 500 20 LEU A 255 173.15 50.03 REMARK 500 20 ASN A 285 38.39 -90.52 REMARK 500 20 GLU A 286 -67.14 -29.63 REMARK 500 21 PRO A 252 31.53 -76.61 REMARK 500 21 LEU A 255 127.18 60.67 REMARK 500 21 PRO A 256 83.87 -38.49 REMARK 500 21 LEU A 284 -32.02 -39.82 REMARK 500 21 ASN A 285 35.83 -90.89 REMARK 500 21 GLU A 286 134.19 -28.38 REMARK 500 22 PRO A 231 32.13 -84.85 REMARK 500 22 PRO A 252 34.35 -75.29 REMARK 500 22 LEU A 255 173.33 50.96 REMARK 500 22 GLU A 265 -70.03 -48.93 REMARK 500 22 SER A 274 -30.33 -36.81 REMARK 500 22 ARG A 275 -76.70 -53.48 REMARK 500 22 ASN A 285 42.34 -88.85 REMARK 500 22 GLU A 286 149.19 -28.55 REMARK 500 22 PRO A 287 149.88 -39.68 REMARK 500 23 ARG A 245 -34.39 -36.74 REMARK 500 23 PRO A 252 33.26 -75.74 REMARK 500 23 LEU A 255 175.55 49.77 REMARK 500 23 PRO A 256 49.04 -76.72 REMARK 500 23 GLU A 286 -53.29 -28.73 REMARK 500 24 PRO A 252 31.00 -76.11 REMARK 500 24 LEU A 255 129.94 61.75 REMARK 500 24 PRO A 256 80.61 -41.14 REMARK 500 24 GLU A 265 -70.72 -39.38 REMARK 500 24 SER A 274 -31.26 -36.90 REMARK 500 24 ASN A 285 39.20 -90.87 REMARK 500 24 GLU A 286 125.61 -27.45 REMARK 500 25 PRO A 252 21.65 -76.87 REMARK 500 25 LEU A 255 134.18 61.12 REMARK 500 25 PRO A 256 56.71 -61.20 REMARK 500 25 SER A 274 -31.68 -36.97 REMARK 500 25 ASN A 285 34.88 -92.35 REMARK 500 25 GLU A 286 108.42 -27.69 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1TP4 A 223 317 UNP P54725 RD23A_HUMAN 223 317
SEQADV 1TP4 GLY A 221 UNP P54725 CLONING ARTIFACT SEQADV 1TP4 SER A 222 UNP P54725 CLONING ARTIFACT
SEQRES 1 A 97 GLY SER ALA THR GLU ALA ALA GLY GLU ASN PRO LEU GLU SEQRES 2 A 97 PHE LEU ARG ASP GLN PRO GLN PHE GLN ASN MET ARG GLN SEQRES 3 A 97 VAL ILE GLN GLN ASN PRO ALA LEU LEU PRO ALA LEU LEU SEQRES 4 A 97 GLN GLN LEU GLY GLN GLU ASN PRO GLN LEU LEU GLN GLN SEQRES 5 A 97 ILE SER ARG HIS GLN GLU GLN PHE ILE GLN MET LEU ASN SEQRES 6 A 97 GLU PRO PRO GLY GLU LEU ALA ASP ILE SER ASP VAL GLU SEQRES 7 A 97 GLY GLU VAL GLY ALA ILE GLY GLU GLU ALA PRO GLN MET SEQRES 8 A 97 ASN TYR ILE GLN VAL THR
HELIX 1 1 PRO A 231 GLN A 238 1 8 HELIX 2 2 GLN A 238 ASN A 251 1 14 HELIX 3 3 ALA A 257 ASN A 266 1 10 HELIX 4 4 GLN A 268 SER A 274 1 7 HELIX 5 5 GLN A 277 ASN A 285 1 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000