10 20 30 40 50 60 70 80 1TFN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 10-JUL-96 1TFN
TITLE STRUCTURE REFINEMENT FOR A 24-NUCLEOTIDE RNA HAIRPIN, NMR, TITLE 2 MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP*CP*AP*GP COMPND 4 *UP*CP*UP*AP*U)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS RIBONUCLEIC ACID, HAIRPIN, BACTERIOPHAGE R17, RNA
EXPDTA SOLUTION NMR
AUTHOR D.J.KERWOOD,P.N.BORER
REVDAT 2 24-FEB-09 1TFN 1 VERSN REVDAT 1 12-FEB-97 1TFN 0
JRNL AUTH D.J.KERWOOD,P.N.BORER JRNL TITL STRUCTURE REFINEMENT FOR A 24-NUCLEOTIDE RNA JRNL TITL 2 HAIRPIN JRNL REF MAGN.RESON.CHEM. V. 33 136 1996 JRNL REFN ISSN 0749-1581
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT, REMARK 1 AUTH 2 O.C.UHLENBECK,I.PELCZER REMARK 1 TITL PROTON NMR AND STRUCTURAL FEATURES OF A REMARK 1 TITL 2 24-NUCLEOTIDE RNA HAIRPIN REMARK 1 REF BIOCHEMISTRY V. 340 6488 1995 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TFN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 RES CSSEQI ATOMS REMARK 470 G A 2 OP1 OP2 REMARK 470 G A 3 OP1 OP2 REMARK 470 A A 4 OP1 OP2 REMARK 470 C A 5 OP1 OP2 REMARK 470 U A 6 OP1 OP2 REMARK 470 G A 7 OP1 OP2 REMARK 470 A A 8 OP1 OP2 REMARK 470 C A 9 OP1 OP2 REMARK 470 G A 10 OP1 OP2 REMARK 470 A A 11 OP1 OP2 REMARK 470 U A 12 OP1 OP2 REMARK 470 C A 13 OP1 OP2 REMARK 470 A A 14 OP1 OP2 REMARK 470 C A 15 OP1 OP2 REMARK 470 G A 16 OP1 OP2 REMARK 470 C A 17 OP1 OP2 REMARK 470 A A 18 OP1 OP2 REMARK 470 G A 19 OP1 OP2 REMARK 470 U A 20 OP1 OP2 REMARK 470 C A 21 OP1 OP2 REMARK 470 U A 22 OP1 OP2 REMARK 470 A A 23 OP1 OP2 REMARK 470 U A 24 OP1 OP2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 C4 G A 1 C5 -0.044 REMARK 500 G A 1 C5 G A 1 C6 0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 C4' - C3' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 G A 1 C3' - C2' - C1' ANGL. DEV. = 6.8 DEGREES REMARK 500 G A 1 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 2 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 G A 3 C1' - O4' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 G A 3 O4' - C1' - N9 ANGL. DEV. = 8.2 DEGREES REMARK 500 A A 4 C4' - C3' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 C A 5 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 G A 7 C2' - C3' - O3' ANGL. DEV. = 10.7 DEGREES REMARK 500 A A 8 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 7 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 C A 9 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 U A 12 C5' - C4' - O4' ANGL. DEV. = 9.0 DEGREES REMARK 500 A A 14 O4' - C1' - N9 ANGL. DEV. = 7.3 DEGREES REMARK 500 C A 15 C1' - O4' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 C A 15 O4' - C1' - N1 ANGL. DEV. = 9.4 DEGREES REMARK 500 G A 16 C1' - O4' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 C A 17 C2' - C3' - O3' ANGL. DEV. = 11.1 DEGREES REMARK 500 C A 17 C3' - C2' - C1' ANGL. DEV. = -4.5 DEGREES REMARK 500 A A 18 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 U A 20 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 G A 19 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 U A 22 O4' - C1' - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 1 0.17 SIDE_CHAIN REMARK 500 G A 3 0.08 SIDE_CHAIN REMARK 500 A A 4 0.12 SIDE_CHAIN REMARK 500 C A 5 0.08 SIDE_CHAIN REMARK 500 G A 7 0.08 SIDE_CHAIN REMARK 500 C A 9 0.14 SIDE_CHAIN REMARK 500 A A 11 0.07 SIDE_CHAIN REMARK 500 U A 12 0.28 SIDE_CHAIN REMARK 500 G A 19 0.12 SIDE_CHAIN REMARK 500 U A 20 0.08 SIDE_CHAIN REMARK 500 U A 22 0.11 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1TFN A 1 24 PDB 1TFN 1TFN 1 24
SEQRES 1 A 24 G G G A C U G A C G A U C SEQRES 2 A 24 A C G C A G U C U A U
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000