10 20 30 40 50 60 70 80 1TDP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 23-MAY-04 1TDP
TITLE NMR SOLUTION STRUCTURE OF THE CARNOBACTERIOCIN B2 IMMUNITY TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNOBACTERIOCIN B2 IMMUNITY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARNOCIN CP52 IMMUNITY PROTEIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; SOURCE 3 ORGANISM_TAXID: 2751; SOURCE 4 GENE: CBIB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALC
KEYWDS FOUR-HELIX BUNDLE, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR T.SPRULES,K.E.KAWULKA,J.C.VEDERAS
REVDAT 2 24-FEB-09 1TDP 1 VERSN REVDAT 1 28-SEP-04 1TDP 0
JRNL AUTH T.SPRULES,K.E.KAWULKA,J.C.VEDERAS JRNL TITL NMR SOLUTION STRUCTURE OF IMB2, A PROTEIN JRNL TITL 2 CONFERRING IMMUNITY TO ANTIMICROBIAL ACTIVITY OF JRNL TITL 3 THE TYPE IIA BACTERIOCIN, CARNOBACTERIOCIN B2 JRNL REF BIOCHEMISTRY V. 43 11740 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15362858 JRNL DOI 10.1021/BI048854+
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T., ADAMS, P.D., CLORE, G.M., REMARK 3 DELANO, W.L., GROS, P., GROSSE-KUNSTLEVE, R.W., REMARK 3 JIANG, J.S., KUSZEWSKI, J., NILGES, M., PANNU, REMARK 3 N.S., READ, R. J., RICE, L.M., SIMONSON, T., AND REMARK 3 WARREN, G.L. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 2118 NOE- REMARK 3 DERIVED DISTANCE RESTRAINTS, 84 HYDROGEN BONDS AND 130 REMARK 3 DIHEDRAL ANGLE RESTRAINTS.
REMARK 4 REMARK 4 1TDP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB022565.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE; 25 MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM CBIB2 U-15N; 20 MM REMARK 210 SODIUM PHOSPHATE BUFFER; 25 MM REMARK 210 NACL; 90% H2O, 10%D2O; 0.8 MM REMARK 210 CBIB2 U-15N,13C; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER; 25 MM NACL; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2.2, REMARK 210 NMRVIEW 5.0, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -158.56 -79.53 REMARK 500 1 ALA A 40 34.84 -80.77 REMARK 500 1 SER A 43 59.35 -94.72 REMARK 500 1 TYR A 62 -100.19 -58.42 REMARK 500 1 LEU A 63 -124.98 47.47 REMARK 500 1 HIS A 65 70.85 -119.77 REMARK 500 1 ARG A 67 -157.47 -155.64 REMARK 500 1 ILE A 68 -76.96 -104.02 REMARK 500 1 ILE A 69 88.69 114.83 REMARK 500 1 SER A 71 -71.29 11.12 REMARK 500 1 SER A 72 19.21 -63.36 REMARK 500 1 LEU A 74 -33.27 -161.94 REMARK 500 1 SER A 105 22.38 -163.08 REMARK 500 1 VAL A 106 86.91 8.61 REMARK 500 1 TYR A 110 30.60 -98.42 REMARK 500 2 ASP A 2 173.32 -52.60 REMARK 500 2 ALA A 40 40.23 -102.93 REMARK 500 2 SER A 55 47.86 -78.96 REMARK 500 2 ARG A 56 -46.83 171.20 REMARK 500 2 TYR A 62 67.61 176.23 REMARK 500 2 SER A 64 60.77 -109.35 REMARK 500 2 HIS A 65 -70.15 67.36 REMARK 500 2 LYS A 66 31.22 -168.83 REMARK 500 2 PRO A 70 43.99 -84.88 REMARK 500 2 SER A 71 -50.64 67.19 REMARK 500 2 SER A 72 19.36 -63.28 REMARK 500 2 LEU A 74 -32.13 -137.41 REMARK 500 2 PRO A 107 -139.36 -63.02 REMARK 500 2 ILE A 109 108.81 154.26 REMARK 500 3 ASP A 2 -171.06 56.39 REMARK 500 3 ASP A 18 108.50 -56.68 REMARK 500 3 LEU A 63 -77.97 -41.25 REMARK 500 3 SER A 64 52.98 -109.77 REMARK 500 3 ARG A 67 -83.36 171.95 REMARK 500 3 ILE A 68 -176.32 -177.67 REMARK 500 3 SER A 72 18.71 -64.16 REMARK 500 3 PRO A 107 -139.36 -67.16 REMARK 500 3 ILE A 109 93.00 -160.58 REMARK 500 4 ASP A 2 -178.20 58.08 REMARK 500 4 ASN A 24 68.84 -102.28 REMARK 500 4 ALA A 40 31.60 -95.31 REMARK 500 4 SER A 43 73.03 -102.28 REMARK 500 4 ARG A 56 -28.70 142.66 REMARK 500 4 SER A 59 -67.17 178.21 REMARK 500 4 TYR A 62 -43.72 -160.96 REMARK 500 4 LEU A 63 107.41 -49.34 REMARK 500 4 SER A 64 62.09 -104.06 REMARK 500 4 HIS A 65 95.52 66.50 REMARK 500 4 ILE A 68 -123.17 -63.09 REMARK 500 4 ILE A 69 142.57 64.19 REMARK 500 4 SER A 72 34.95 -64.36 REMARK 500 4 ASP A 90 71.01 -109.72 REMARK 500 4 PRO A 107 -139.37 -63.35 REMARK 500 4 ILE A 109 88.58 -166.96 REMARK 500 4 TYR A 110 38.16 -92.45 REMARK 500 5 ALA A 40 27.79 -71.95 REMARK 500 5 SER A 43 66.77 -102.07 REMARK 500 5 HIS A 65 96.84 64.96 REMARK 500 5 ILE A 69 148.94 -170.09 REMARK 500 5 SER A 72 19.20 -63.90 REMARK 500 5 LEU A 74 -35.29 -161.23 REMARK 500 5 ASP A 90 76.76 -117.41 REMARK 500 5 MET A 104 70.86 -68.17 REMARK 500 5 VAL A 106 133.98 178.23 REMARK 500 5 PRO A 107 -139.94 -61.09 REMARK 500 5 TYR A 110 33.98 -96.44 REMARK 500 6 ASP A 2 -172.55 -61.27 REMARK 500 6 ARG A 56 -38.77 158.72 REMARK 500 6 SER A 59 -32.01 -130.12 REMARK 500 6 TYR A 61 93.98 -62.25 REMARK 500 6 HIS A 65 -79.05 64.18 REMARK 500 6 LYS A 66 79.09 -152.12 REMARK 500 6 ARG A 67 -64.24 -122.03 REMARK 500 6 ILE A 68 -83.17 -144.96 REMARK 500 6 ILE A 69 122.76 59.81 REMARK 500 6 SER A 72 19.16 -64.19 REMARK 500 6 LEU A 74 -33.24 -141.86 REMARK 500 6 ASP A 90 74.93 -105.09 REMARK 500 6 PRO A 107 -139.50 -67.68 REMARK 500 6 TYR A 110 32.42 -98.90 REMARK 500 7 ASN A 24 77.29 -100.92 REMARK 500 7 ALA A 40 37.30 -79.37 REMARK 500 7 TYR A 62 -88.89 46.10 REMARK 500 7 LEU A 63 85.04 59.68 REMARK 500 7 HIS A 65 116.57 48.37 REMARK 500 7 LYS A 66 173.26 65.53 REMARK 500 7 ILE A 69 89.82 59.21 REMARK 500 7 PRO A 70 45.88 -86.94 REMARK 500 7 SER A 71 -47.67 76.16 REMARK 500 7 SER A 72 21.11 -63.02 REMARK 500 7 ASP A 90 71.92 -113.29 REMARK 500 7 SER A 105 82.49 -166.08 REMARK 500 7 VAL A 106 55.10 -178.31 REMARK 500 7 TYR A 108 -166.73 -110.20 REMARK 500 7 ILE A 109 102.39 153.49 REMARK 500 8 ASN A 24 74.35 -113.94 REMARK 500 8 SER A 55 -76.70 -51.65 REMARK 500 8 SER A 59 -67.50 177.63 REMARK 500 8 TYR A 61 175.60 -49.19 REMARK 500 8 TYR A 62 92.85 -48.42 REMARK 500 8 LEU A 63 91.67 -174.79 REMARK 500 8 LYS A 66 162.89 61.97 REMARK 500 8 ILE A 69 106.61 -53.61 REMARK 500 8 PRO A 70 45.06 -85.58 REMARK 500 8 SER A 71 -49.41 75.15 REMARK 500 8 SER A 72 18.43 -63.35 REMARK 500 8 ILE A 76 -74.55 -64.53 REMARK 500 8 SER A 105 89.44 -170.54 REMARK 500 8 PRO A 107 -151.97 -43.99 REMARK 500 8 ILE A 109 144.15 -28.60 REMARK 500 9 GLU A 25 -73.80 -80.66 REMARK 500 9 ALA A 40 34.12 -96.42 REMARK 500 9 SER A 43 66.06 -100.98 REMARK 500 9 SER A 59 -41.93 -130.19 REMARK 500 9 TYR A 61 80.71 -58.61 REMARK 500 9 TYR A 62 -65.10 66.61 REMARK 500 9 LEU A 63 112.56 66.50 REMARK 500 9 HIS A 65 66.61 64.06 REMARK 500 9 LYS A 66 89.77 59.16 REMARK 500 9 ILE A 68 106.75 -160.60 REMARK 500 9 ILE A 69 88.53 -154.70 REMARK 500 9 SER A 72 18.48 -64.09 REMARK 500 9 ASP A 90 70.99 -110.26 REMARK 500 9 LEU A 103 39.55 -98.16 REMARK 500 9 VAL A 106 132.71 177.01 REMARK 500 9 PRO A 107 -139.86 -63.13 REMARK 500 9 ILE A 109 103.60 159.38 REMARK 500 9 TYR A 110 37.78 -93.21 REMARK 500 10 ASN A 24 79.98 -102.99 REMARK 500 10 ALA A 40 30.51 -96.76 REMARK 500 10 SER A 43 66.56 -101.35 REMARK 500 10 TYR A 61 89.93 -53.68 REMARK 500 10 TYR A 62 164.77 52.99 REMARK 500 10 LEU A 63 63.13 176.65 REMARK 500 10 HIS A 65 -41.67 174.34 REMARK 500 10 SER A 72 19.11 -64.15 REMARK 500 10 LEU A 74 -32.19 -130.66 REMARK 500 10 LEU A 103 -159.91 -83.61 REMARK 500 10 SER A 105 84.04 -169.79 REMARK 500 10 PRO A 107 -142.77 -40.59 REMARK 500 10 ILE A 109 116.89 -174.60 REMARK 500 11 GLN A 6 -73.75 -59.53 REMARK 500 11 VAL A 32 -73.27 -58.61 REMARK 500 11 ALA A 40 32.60 -76.87 REMARK 500 11 TYR A 61 101.32 -52.45 REMARK 500 11 TYR A 62 117.82 62.31 REMARK 500 11 HIS A 65 124.67 62.61 REMARK 500 11 LYS A 66 165.27 61.30 REMARK 500 11 ARG A 67 -65.05 68.43 REMARK 500 11 ILE A 69 78.75 69.32 REMARK 500 11 SER A 72 19.50 -63.87 REMARK 500 11 ASP A 90 76.78 -114.14 REMARK 500 11 THR A 91 -9.69 -51.42 REMARK 500 11 MET A 104 86.20 -67.77 REMARK 500 11 SER A 105 78.30 -164.14 REMARK 500 11 VAL A 106 46.87 -153.44 REMARK 500 11 ILE A 109 110.46 157.99 REMARK 500 11 TYR A 110 34.21 -96.95 REMARK 500 12 ASN A 24 74.23 -106.41 REMARK 500 12 ALA A 40 31.27 -94.78 REMARK 500 12 TYR A 61 102.25 -38.49 REMARK 500 12 TYR A 62 -55.62 78.01 REMARK 500 12 LEU A 63 37.46 78.83 REMARK 500 12 SER A 64 69.80 -109.35 REMARK 500 12 ILE A 68 131.03 64.60 REMARK 500 12 SER A 72 19.25 -64.06 REMARK 500 12 LEU A 74 -33.11 -141.32 REMARK 500 12 ASP A 90 76.24 -108.09 REMARK 500 12 VAL A 106 135.46 -178.31 REMARK 500 12 PRO A 107 -139.71 -65.31 REMARK 500 13 PHE A 26 -75.79 -62.51 REMARK 500 13 LEU A 27 -55.61 -20.55 REMARK 500 13 ALA A 40 28.03 -70.90 REMARK 500 13 SER A 43 67.37 -100.46 REMARK 500 13 ARG A 56 -31.40 159.67 REMARK 500 13 TYR A 61 175.06 -48.43 REMARK 500 13 TYR A 62 94.37 -47.48 REMARK 500 13 ARG A 67 30.62 -141.25 REMARK 500 13 SER A 72 -177.18 -62.52 REMARK 500 13 MET A 73 -63.30 68.81 REMARK 500 13 ILE A 76 -70.74 -63.82 REMARK 500 13 ASP A 90 74.49 -108.93 REMARK 500 13 VAL A 106 108.77 -179.18 REMARK 500 13 TYR A 108 -156.71 -107.28 REMARK 500 13 ILE A 109 113.92 69.99 REMARK 500 13 TYR A 110 32.04 -92.69 REMARK 500 14 ALA A 40 32.37 -98.06 REMARK 500 14 ILE A 58 -96.77 -30.32 REMARK 500 14 TYR A 62 106.73 56.61 REMARK 500 14 LEU A 63 84.60 -174.46 REMARK 500 14 ARG A 67 -163.52 62.19 REMARK 500 14 SER A 72 19.45 -64.15 REMARK 500 14 LEU A 74 -33.17 -170.99 REMARK 500 14 ASP A 90 77.00 -105.25 REMARK 500 14 SER A 105 71.34 -170.23 REMARK 500 14 VAL A 106 134.77 177.49 REMARK 500 14 PRO A 107 -140.88 -72.92 REMARK 500 14 ILE A 109 147.15 60.64 REMARK 500 14 TYR A 110 32.61 -99.56 REMARK 500 15 ILE A 58 25.88 -69.15 REMARK 500 15 SER A 59 -49.13 -172.44 REMARK 500 15 TYR A 61 -72.83 -51.63 REMARK 500 15 PRO A 70 42.01 -83.08 REMARK 500 15 SER A 71 -47.46 68.84 REMARK 500 15 SER A 72 19.68 -63.23 REMARK 500 15 ILE A 76 -70.90 -60.80 REMARK 500 15 THR A 91 -8.03 -51.31 REMARK 500 15 LEU A 103 -159.08 -83.11 REMARK 500 15 SER A 105 73.34 -169.85 REMARK 500 15 PRO A 107 -152.01 -42.87 REMARK 500 15 ILE A 109 142.56 -25.39 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1TDP A 1 111 UNP P38582 CB2I_CARPI 1 111
SEQRES 1 A 111 MET ASP ILE LYS SER GLN THR LEU TYR LEU ASN LEU SER SEQRES 2 A 111 GLU ALA TYR LYS ASP PRO GLU VAL LYS ALA ASN GLU PHE SEQRES 3 A 111 LEU SER LYS LEU VAL VAL GLN CYS ALA GLY LYS LEU THR SEQRES 4 A 111 ALA SER ASN SER GLU ASN SER TYR ILE GLU VAL ILE SER SEQRES 5 A 111 LEU LEU SER ARG GLY ILE SER SER TYR TYR LEU SER HIS SEQRES 6 A 111 LYS ARG ILE ILE PRO SER SER MET LEU THR ILE TYR THR SEQRES 7 A 111 GLN ILE GLN LYS ASP ILE LYS ASN GLY ASN ILE ASP THR SEQRES 8 A 111 GLU LYS LEU ARG LYS TYR GLU ILE ALA LYS GLY LEU MET SEQRES 9 A 111 SER VAL PRO TYR ILE TYR PHE
HELIX 1 1 ILE A 3 LYS A 17 1 15 HELIX 2 2 ASP A 18 ALA A 23 1 6 HELIX 3 3 ASN A 24 ALA A 40 1 17 HELIX 4 4 SER A 43 TYR A 61 1 19 HELIX 5 5 PRO A 70 MET A 73 5 4 HELIX 6 6 LEU A 74 ASN A 86 1 13 HELIX 7 7 ASP A 90 ALA A 100 1 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000