10 20 30 40 50 60 70 80 1TBL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 20-MAY-04 1TBL
TITLE H141N MUTANT OF RAT LIVER ARGINASE I
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ARGINASE I, H141N MUTANT, BINUCLEAR MANGANESE CLUSTER, KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.CAMA,J.D.COX,D.E.ASH,D.W.CHRISTIANSON
REVDAT 3 24-FEB-09 1TBL 1 VERSN REVDAT 2 06-DEC-05 1TBL 1 JRNL REVDAT 1 16-AUG-05 1TBL 0
JRNL AUTH D.M.COLLELUORI,R.S.RECZKOWSKI,F.A.EMIG,E.CAMA, JRNL AUTH 2 J.D.COX,L.R.SCOLNICK,K.COMPHER,K.JUDE,S.HAN, JRNL AUTH 3 R.E.VIOLA,D.W.CHRISTIANSON,D.E.ASH JRNL TITL PROBING THE ROLE OF THE HYPER-REACTIVE HISTIDINE JRNL TITL 2 RESIDUE OF ARGINASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 444 15 2005 JRNL REFN ISSN 0003-9861 JRNL PMID 16266687 JRNL DOI 10.1016/J.ABB.2005.09.009
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1254856.870 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.298 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1739 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2635 REMARK 3 BIN R VALUE (WORKING SET) : 0.4370 REMARK 3 BIN FREE R VALUE : 0.4610 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 272 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.09000 REMARK 3 B22 (A**2) : -21.09000 REMARK 3 B33 (A**2) : 42.18000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM SIGMAA (A) : 0.82 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.67 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.84 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.52 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 37.48 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CISPEP2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CISPEP.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1TBL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022530.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18163 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE, PEG8000, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.61133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.80567 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 89 CA PRO A 286 2554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 153 CE LYS A 153 NZ -0.234 REMARK 500 LYS B 153 CE LYS B 153 NZ -0.234 REMARK 500 LYS C 153 CE LYS C 153 NZ -0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 103 CG - SD - CE ANGL. DEV. = 11.8 DEGREES REMARK 500 MET B 103 CG - SD - CE ANGL. DEV. = 11.8 DEGREES REMARK 500 GLY C 99 N - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 MET C 103 CG - SD - CE ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 -9.84 -149.30 REMARK 500 GLU A 42 -6.63 -54.84 REMARK 500 GLN A 65 -107.76 63.13 REMARK 500 VAL A 67 128.06 -36.02 REMARK 500 SER A 102 -32.30 -36.32 REMARK 500 PRO A 132 -16.79 -47.82 REMARK 500 LEU A 140 16.47 -65.06 REMARK 500 PRO A 160 104.93 -52.83 REMARK 500 PRO A 167 106.62 -52.38 REMARK 500 ARG A 180 -2.77 -146.49 REMARK 500 ARG A 222 -71.94 -83.15 REMARK 500 ILE A 260 -77.93 -41.95 REMARK 500 LYS A 266 -3.25 -57.08 REMARK 500 PRO A 280 -18.09 -48.97 REMARK 500 SER B 16 -9.92 -149.26 REMARK 500 GLU B 42 -6.67 -54.80 REMARK 500 GLN B 65 -107.78 63.15 REMARK 500 VAL B 67 128.06 -36.02 REMARK 500 SER B 102 -32.27 -36.34 REMARK 500 PRO B 132 -16.80 -47.85 REMARK 500 LEU B 140 16.51 -65.10 REMARK 500 PRO B 160 104.92 -52.83 REMARK 500 PRO B 167 106.61 -52.36 REMARK 500 ARG B 180 -2.74 -146.52 REMARK 500 ARG B 222 -71.92 -83.15 REMARK 500 ILE B 260 -78.00 -41.93 REMARK 500 LYS B 266 -3.23 -57.09 REMARK 500 PRO B 280 -18.15 -48.91 REMARK 500 SER C 16 -9.81 -149.28 REMARK 500 GLU C 42 -6.64 -54.84 REMARK 500 GLN C 65 -107.76 63.08 REMARK 500 VAL C 67 128.12 -36.02 REMARK 500 SER C 102 -32.26 -36.33 REMARK 500 PRO C 132 -16.83 -47.77 REMARK 500 LEU C 140 16.43 -65.06 REMARK 500 PRO C 160 104.92 -52.81 REMARK 500 PRO C 167 106.61 -52.37 REMARK 500 ARG C 180 -2.77 -146.54 REMARK 500 ARG C 222 -71.94 -83.20 REMARK 500 ILE C 260 -77.97 -41.88 REMARK 500 LYS C 266 -3.29 -57.02 REMARK 500 PRO C 280 -18.07 -48.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 98 GLY A 99 90.50 REMARK 500 GLY B 98 GLY B 99 90.46 REMARK 500 GLY C 98 GLY C 99 90.44 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 1 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 232 OD2 81.9 REMARK 620 3 ASP A 234 OD1 56.6 84.4 REMARK 620 4 ASP A 234 OD2 106.6 63.7 57.2 REMARK 620 5 HIS A 126 ND1 64.1 141.7 62.8 108.0 REMARK 620 6 HOH A 800 O 117.2 88.2 170.9 123.5 122.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 2 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 232 OD2 62.1 REMARK 620 3 HIS A 101 ND1 86.2 94.0 REMARK 620 4 ASP A 128 OD2 65.3 123.8 101.1 REMARK 620 5 HOH A 800 O 110.1 91.6 163.5 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 3 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 232 OD2 REMARK 620 2 ASP B 124 OD1 81.1 REMARK 620 3 HIS B 126 ND1 140.5 63.7 REMARK 620 4 ASP B 234 OD1 83.6 56.0 62.4 REMARK 620 5 HOH B 801 O 85.4 115.5 124.8 167.1 REMARK 620 6 ASP B 234 OD2 63.4 105.5 107.7 56.8 123.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 4 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 232 OD2 REMARK 620 2 ASP B 124 OD2 61.7 REMARK 620 3 ASP B 128 OD2 123.4 64.9 REMARK 620 4 HOH B 801 O 92.9 111.9 90.2 REMARK 620 5 HIS B 101 ND1 92.8 84.8 100.0 163.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 5 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 802 O REMARK 620 2 ASP C 234 OD1 169.2 REMARK 620 3 ASP C 124 OD1 115.5 56.2 REMARK 620 4 ASP C 232 OD2 87.7 84.1 80.7 REMARK 620 5 ASP C 234 OD2 124.1 57.7 106.2 63.7 REMARK 620 6 HIS C 126 ND1 121.5 63.0 63.6 140.7 109.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 320 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 802 O REMARK 620 2 HIS C 101 ND1 162.6 REMARK 620 3 ASP C 124 OD2 111.1 86.2 REMARK 620 4 ASP C 232 OD2 93.7 95.4 62.9 REMARK 620 5 ASP C 128 OD2 87.5 99.6 64.8 124.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 4 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 5 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 320
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLA RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF RAT LIVER ARGINASE, THE REMARK 900 BINUCLEAR MANGANESE METALLOENZYME OF THE UREA CYCLE REMARK 900 RELATED ID: 1TA1 RELATED DB: PDB REMARK 900 H141C MUTANT OF RAT LIVER ARGINASE I REMARK 900 RELATED ID: 1TBH RELATED DB: PDB REMARK 900 H141D MUTANT OF RAT LIVER ARGINASE I REMARK 900 RELATED ID: 1TBJ RELATED DB: PDB REMARK 900 H141A MUTANT OF RAT LIVER ARGINASE I
DBREF 1TBL A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1TBL B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1TBL C 6 319 UNP P07824 ARGI1_RAT 6 319
SEQADV 1TBL ASN A 141 UNP P07824 HIS 141 ENGINEERED SEQADV 1TBL ASN B 141 UNP P07824 HIS 141 ENGINEERED SEQADV 1TBL ASN C 141 UNP P07824 HIS 141 ENGINEERED
SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU ASN GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU ASN GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU ASN GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU
HET MN A 1 1 HET MN A 2 1 HET MN B 3 1 HET MN B 4 1 HET MN C 5 1 HET MN C 320 1
HETNAM MN MANGANESE (II) ION
FORMUL 4 MN 6(MN 2+) FORMUL 10 HOH *29(H2 O)
HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLU A 42 1 8 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 ASP A 183 LEU A 193 1 11 HELIX 10 10 SER A 199 GLY A 207 1 9 HELIX 11 11 GLY A 207 GLY A 221 1 15 HELIX 12 12 ASP A 234 LEU A 236 5 3 HELIX 13 13 SER A 253 LYS A 266 1 14 HELIX 14 14 THR A 285 PHE A 304 1 20 HELIX 15 15 GLY B 23 GLU B 25 5 3 HELIX 16 16 LYS B 26 ALA B 34 1 9 HELIX 17 17 GLY B 35 GLU B 42 1 8 HELIX 18 18 ASN B 69 ASN B 90 1 22 HELIX 19 19 ASP B 100 SER B 102 5 3 HELIX 20 20 MET B 103 HIS B 115 1 13 HELIX 21 21 ASN B 139 GLY B 142 5 4 HELIX 22 22 GLN B 143 LEU B 149 1 7 HELIX 23 23 ASP B 183 LEU B 193 1 11 HELIX 24 24 SER B 199 GLY B 207 1 9 HELIX 25 25 GLY B 207 GLY B 221 1 15 HELIX 26 26 ASP B 234 LEU B 236 5 3 HELIX 27 27 SER B 253 LYS B 266 1 14 HELIX 28 28 THR B 285 PHE B 304 1 20 HELIX 29 29 GLY C 23 GLU C 25 5 3 HELIX 30 30 LYS C 26 ALA C 34 1 9 HELIX 31 31 GLY C 35 GLU C 42 1 8 HELIX 32 32 ASN C 69 ASN C 90 1 22 HELIX 33 33 ASP C 100 SER C 102 5 3 HELIX 34 34 MET C 103 HIS C 115 1 13 HELIX 35 35 ASN C 139 GLY C 142 5 4 HELIX 36 36 GLN C 143 LEU C 149 1 7 HELIX 37 37 ASP C 183 LEU C 193 1 11 HELIX 38 38 SER C 199 GLY C 207 1 9 HELIX 39 39 GLY C 207 GLY C 221 1 15 HELIX 40 40 ASP C 234 LEU C 236 5 3 HELIX 41 41 SER C 253 LYS C 266 1 14 HELIX 42 42 THR C 285 PHE C 304 1 20
SHEET 1 A 7 ASN A 46 ASP A 52 0 SHEET 2 A 7 PRO A 7 ALA A 13 1 N GLY A 12 O GLY A 51 SHEET 3 A 7 ILE A 93 GLY A 98 1 O ILE A 93 N PRO A 7 SHEET 4 A 7 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 7 ILE A 227 ASP A 232 1 N LEU A 229 O ASP A 274 SHEET 6 A 7 CYS A 119 VAL A 123 1 N VAL A 123 O ASP A 232 SHEET 7 A 7 ILE A 174 ILE A 177 1 O VAL A 175 N VAL A 120 SHEET 1 B 7 ASN B 46 ASP B 52 0 SHEET 2 B 7 PRO B 7 ALA B 13 1 N GLY B 12 O GLY B 51 SHEET 3 B 7 ILE B 93 GLY B 98 1 O ILE B 93 N PRO B 7 SHEET 4 B 7 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 7 ILE B 227 ASP B 232 1 N LEU B 229 O ASP B 274 SHEET 6 B 7 CYS B 119 VAL B 123 1 N VAL B 123 O ASP B 232 SHEET 7 B 7 ILE B 174 ILE B 177 1 O VAL B 175 N VAL B 120 SHEET 1 C 7 ASN C 46 ASP C 52 0 SHEET 2 C 7 PRO C 7 ALA C 13 1 N GLY C 12 O GLY C 51 SHEET 3 C 7 ILE C 93 GLY C 98 1 O ILE C 93 N PRO C 7 SHEET 4 C 7 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 7 ILE C 227 ASP C 232 1 N LEU C 229 O ASP C 274 SHEET 6 C 7 CYS C 119 VAL C 123 1 N VAL C 123 O ASP C 232 SHEET 7 C 7 ILE C 174 ILE C 177 1 O VAL C 175 N VAL C 120
LINK MN MN A 1 OD1 ASP A 124 1555 1555 2.50 LINK MN MN A 1 OD2 ASP A 232 1555 1555 2.49 LINK MN MN A 1 OD1 ASP A 234 1555 1555 2.45 LINK MN MN A 1 OD2 ASP A 234 1555 1555 2.09 LINK MN MN A 1 ND1 HIS A 126 1555 1555 2.44 LINK MN MN A 1 O HOH A 800 1555 1555 2.60 LINK MN MN A 2 OD2 ASP A 124 1555 1555 2.44 LINK MN MN A 2 OD2 ASP A 232 1555 1555 2.49 LINK MN MN A 2 ND1 HIS A 101 1555 1555 2.03 LINK MN MN A 2 OD2 ASP A 128 1555 1555 2.15 LINK MN MN A 2 O HOH A 800 1555 1555 2.45 LINK MN MN B 3 OD2 ASP B 232 1555 1555 2.50 LINK MN MN B 3 OD1 ASP B 124 1555 1555 2.53 LINK MN MN B 3 ND1 HIS B 126 1555 1555 2.44 LINK MN MN B 3 OD1 ASP B 234 1555 1555 2.47 LINK MN MN B 3 O HOH B 801 1555 1555 2.60 LINK MN MN B 3 OD2 ASP B 234 1555 1555 2.10 LINK MN MN B 4 OD2 ASP B 232 1555 1555 2.50 LINK MN MN B 4 OD2 ASP B 124 1555 1555 2.46 LINK MN MN B 4 OD2 ASP B 128 1555 1555 2.15 LINK MN MN B 4 O HOH B 801 1555 1555 2.27 LINK MN MN B 4 ND1 HIS B 101 1555 1555 2.06 LINK MN MN C 5 O HOH C 802 1555 1555 2.66 LINK MN MN C 5 OD1 ASP C 234 1555 1555 2.44 LINK MN MN C 5 OD1 ASP C 124 1555 1555 2.54 LINK MN MN C 5 OD2 ASP C 232 1555 1555 2.51 LINK MN MN C 5 OD2 ASP C 234 1555 1555 2.06 LINK MN MN C 5 ND1 HIS C 126 1555 1555 2.43 LINK MN MN C 320 O HOH C 802 1555 1555 2.47 LINK MN MN C 320 ND1 HIS C 101 1555 1555 2.03 LINK MN MN C 320 OD2 ASP C 124 1555 1555 2.44 LINK MN MN C 320 OD2 ASP C 232 1555 1555 2.44 LINK MN MN C 320 OD2 ASP C 128 1555 1555 2.19
SITE 1 AC1 6 MN A 2 ASP A 124 HIS A 126 ASP A 232 SITE 2 AC1 6 ASP A 234 HOH A 800 SITE 1 AC2 6 MN A 1 HIS A 101 ASP A 124 ASP A 128 SITE 2 AC2 6 ASP A 232 HOH A 800 SITE 1 AC3 6 MN B 4 ASP B 124 HIS B 126 ASP B 232 SITE 2 AC3 6 ASP B 234 HOH B 801 SITE 1 AC4 6 MN B 3 HIS B 101 ASP B 124 ASP B 128 SITE 2 AC4 6 ASP B 232 HOH B 801 SITE 1 AC5 6 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC5 6 MN C 320 HOH C 802 SITE 1 AC6 6 MN C 5 HIS C 101 ASP C 124 ASP C 128 SITE 2 AC6 6 ASP C 232 HOH C 802
CRYST1 88.332 88.332 113.417 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011321 0.006536 0.000000 0.00000
SCALE2 0.000000 0.013072 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008817 0.00000