1TBK - Header Asymmetric Unit

HEADER RNA 20-MAY-04 1TBK

TITLE NMR STRUCTURE OF THE VS RIBOZYME STEM-LOOP V RNA IN THE TITLE 2 ABSENCE OF MULTIVALENT IONS.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: VS RIBOZYME STEM-LOOP V; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SL5; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS DERIVED FROM THE SOURCE 4 NEUROSPORA VARKUD SATELLITE RIBOZYME

KEYWDS U-TURN; HAIRPIN, RNA

EXPDTA SOLUTION NMR

NUMMDL 11

MDLTYP MINIMIZED AVERAGE

AUTHOR D.O.CAMPBELL,P.LEGAULT

REVDAT 3 24-FEB-09 1TBK 1 VERSN REVDAT 2 22-MAR-05 1TBK 1 JRNL REVDAT 1 01-MAR-05 1TBK 0

JRNL AUTH D.O.CAMPBELL,P.LEGAULT JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE VARKUD JRNL TITL 2 SATELLITE RIBOZYME STEM-LOOP V RNA AND JRNL TITL 3 MAGNESIUM-ION BINDING FROM CHEMICAL-SHIFT MAPPING JRNL REF BIOCHEMISTRY V. 44 4157 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15766243 JRNL DOI 10.1021/BI047963L

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.0.6 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1TBK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-04. REMARK 100 THE RCSB ID CODE IS RCSB022529.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 278 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 50 MM NACL; 50 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : UNLABELED SL5; 15N SL5; 13C REMARK 210 15N SL5; UNLABELED SL5; 15N SL5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D FLIP-BACK WATERGATE NOESY, REMARK 210 2D 1H-15N CPMG-NOESY, 2D HNN- REMARK 210 CSOSY, 2D HNN-COSY, 3D 13C- REMARK 210 EDITED HMQC-NOESY, DQF-COSY, REMARK 210 3D HCCH E.COSY, 2D 1H-13C CT- REMARK 210 TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH-2.0.6, NMRPIPE REMARK 210 97.231.15.18, NMRVIEW 5.0.3, REMARK 210 MOLMOL 2K.2, CURVES 5.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 61 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER REMARK 210 MODELS ARE THE 10 STRUCTURES REMARK 210 WITH THE LOWEST ENERGY (MODEL REMARK 210 2 -- 11) REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 690 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 690 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 692 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 692 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 693 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 694 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 694 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 697 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 697 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 698 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 701 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 705 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 705 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 690 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 690 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 692 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 692 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 693 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 694 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 694 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 697 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 697 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 698 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 701 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 705 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 705 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 690 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 690 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 692 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 692 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 693 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 694 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 694 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 697 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 697 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 698 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A A 701 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 705 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 705 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 G A 690 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 690 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 4 G A 692 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 692 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 A A 693 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 G A 694 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 694 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 G A 697 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 G A 697 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 A A 698 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 A A 701 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 143 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

DBREF 1TBK A 690 706 PDB 1TBK 1TBK 690 706

SEQRES 1 A 17 G C G A G U U G A C U A C SEQRES 2 A 17 U C G C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000