10 20 30 40 50 60 70 80 1T4S - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 30-APR-04 1T4S
TITLE ARGINASE-L-VALINE COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3)
KEYWDS ARGINASE, L-VALINE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.CAMA,S.PETHE,J.-L.BOUCHER,H.SHOUFA,F.A.EMIG,D.E.ASH, AUTHOR 2 R.E.VIOLA,D.MANSUY,D.W.CHRISTIANSON
REVDAT 2 24-FEB-09 1T4S 1 VERSN REVDAT 1 12-OCT-04 1T4S 0
JRNL AUTH E.CAMA,S.PETHE,J.-L.BOUCHER,S.HAN,F.A.EMIG,D.E.ASH, JRNL AUTH 2 R.E.VIOLA,D.MANSUY,D.W.CHRISTIANSON JRNL TITL INHIBITOR COORDINATION INTERACTIONS IN THE JRNL TITL 2 BINUCLEAR MANGANESE CLUSTER OF ARGINASE JRNL REF BIOCHEMISTRY V. 43 8987 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15248756 JRNL DOI 10.1021/BI0491705
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1389735.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 23147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1201 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3647 REMARK 3 BIN R VALUE (WORKING SET) : 0.4470 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.08000 REMARK 3 B22 (A**2) : -20.08000 REMARK 3 B33 (A**2) : 40.15000 REMARK 3 B12 (A**2) : -0.95000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM SIGMAA (A) : 0.77 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.59 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.87 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.03 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.070 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.480 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 51.13 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : UNK.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : UNK.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1T4S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022311.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.982 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE, PEG8000, L-VALINE, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.83333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY C 138 N GLY C 138 CA 0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY C 138 N - CA - C ANGL. DEV. = -29.5 DEGREES REMARK 500 GLY C 138 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 65.38 -53.12 REMARK 500 SER A 16 -4.98 -152.84 REMARK 500 GLU A 42 -9.36 -58.07 REMARK 500 GLU A 44 3.20 -68.89 REMARK 500 PHE A 64 99.41 -57.68 REMARK 500 GLN A 65 -107.14 58.56 REMARK 500 PRO A 116 -7.78 -52.48 REMARK 500 PRO A 132 -11.01 -48.47 REMARK 500 PRO A 160 89.19 -43.27 REMARK 500 PRO A 167 99.26 -31.03 REMARK 500 ARG A 180 -9.82 -158.11 REMARK 500 ARG A 222 -78.04 -65.33 REMARK 500 THR A 246 52.75 -112.84 REMARK 500 PRO A 286 -35.81 -36.05 REMARK 500 THR A 306 112.29 -34.96 REMARK 500 GLU A 315 -2.14 71.65 REMARK 500 PRO B 14 66.63 -54.52 REMARK 500 SER B 16 -6.99 -148.85 REMARK 500 GLU B 42 -7.87 -59.34 REMARK 500 GLU B 44 2.27 -67.41 REMARK 500 PHE B 64 97.94 -57.51 REMARK 500 GLN B 65 -107.40 60.22 REMARK 500 PRO B 116 -7.75 -51.71 REMARK 500 PRO B 132 -9.45 -48.54 REMARK 500 PRO B 160 87.59 -42.62 REMARK 500 PRO B 167 99.45 -34.14 REMARK 500 ARG B 180 -10.90 -156.20 REMARK 500 ARG B 222 -75.98 -67.84 REMARK 500 VAL B 239 -7.57 -58.05 REMARK 500 GLU B 277 -0.86 71.15 REMARK 500 PRO B 286 -35.09 -35.88 REMARK 500 THR B 306 109.74 -34.60 REMARK 500 PRO C 14 63.27 -53.85 REMARK 500 SER C 16 -4.54 -153.05 REMARK 500 GLU C 44 1.78 -68.47 REMARK 500 PHE C 64 98.94 -59.20 REMARK 500 GLN C 65 -107.62 58.75 REMARK 500 PRO C 116 -8.97 -51.05 REMARK 500 PRO C 132 -11.72 -46.56 REMARK 500 SER C 137 -164.54 -101.18 REMARK 500 PRO C 160 88.30 -43.74 REMARK 500 PRO C 167 99.94 -32.17 REMARK 500 ARG C 180 -8.58 -157.47 REMARK 500 ARG C 222 -78.95 -64.59 REMARK 500 VAL C 239 -5.28 -57.91 REMARK 500 THR C 246 50.01 -110.63 REMARK 500 PRO C 286 -34.88 -34.86 REMARK 500 THR C 306 110.47 -35.40 REMARK 500 GLU C 315 -2.02 70.65 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 234 OD1 REMARK 620 2 ASP A 234 OD2 55.3 REMARK 620 3 ASP A 232 OD2 83.3 83.5 REMARK 620 4 ASP A 124 OD1 77.8 131.9 102.8 REMARK 620 5 HIS A 126 ND1 105.1 97.5 170.5 83.7 REMARK 620 6 HOH A 729 O 159.2 109.0 81.1 119.1 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 ASP A 232 OD2 93.7 REMARK 620 3 ASP A 124 OD2 93.5 78.3 REMARK 620 4 ASP A 128 OD2 90.2 150.2 71.9 REMARK 620 5 HOH A 729 O 160.5 87.2 105.7 98.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 730 O REMARK 620 2 ASP B 232 OD2 80.6 REMARK 620 3 ASP B 234 OD1 158.1 83.9 REMARK 620 4 ASP B 234 OD2 106.6 83.3 56.0 REMARK 620 5 ASP B 124 OD1 123.0 99.9 74.8 130.2 REMARK 620 6 HIS B 126 ND1 91.5 172.1 103.7 98.9 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 128 OD2 86.6 REMARK 620 3 ASP B 232 OD2 99.3 146.5 REMARK 620 4 ASP B 124 OD2 93.4 69.7 77.1 REMARK 620 5 HOH B 730 O 157.4 102.8 84.2 109.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 126 ND1 REMARK 620 2 ASP C 232 OD2 170.4 REMARK 620 3 ASP C 234 OD1 108.1 81.5 REMARK 620 4 ASP C 234 OD2 91.3 94.1 55.9 REMARK 620 5 ASP C 124 OD1 82.3 100.2 78.8 129.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 232 OD2 REMARK 620 2 HOH C 728 O 89.7 REMARK 620 3 HIS C 101 ND1 96.6 157.3 REMARK 620 4 ASP C 128 OD2 146.9 100.5 86.0 REMARK 620 5 ASP C 124 OD2 78.1 108.8 93.9 68.8 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL A 1000 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL B 1001 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAL C 1002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T4P RELATED DB: PDB REMARK 900 ARGINASE-DEHYDRO-ABH COMPLEX REMARK 900 RELATED ID: 1T4R RELATED DB: PDB REMARK 900 ARGINASE-DESCARBOXY-NOR-NOHA COMPLEX REMARK 900 RELATED ID: 1T4T RELATED DB: PDB REMARK 900 ARGINASE-DINOR-NOHA COMPLEX REMARK 900 RELATED ID: 1T5F RELATED DB: PDB REMARK 900 ARGINASE I-AOH COMPLEX REMARK 900 RELATED ID: 1T5G RELATED DB: PDB REMARK 900 ARGINASE-F2-L-ARGININE COMPLEX
DBREF 1T4S A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1T4S B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1T4S C 6 319 UNP P07824 ARGI1_RAT 6 319
SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU
HET MN A 500 1 HET MN A 501 1 HET MN B 502 1 HET MN B 503 1 HET MN C 504 1 HET MN C 505 1 HET VAL A1000 8 HET VAL B1001 8 HET VAL C1002 8
HETNAM MN MANGANESE (II) ION HETNAM VAL VALINE
FORMUL 4 MN 6(MN 2+) FORMUL 10 VAL 3(C5 H11 N O2) FORMUL 13 HOH *31(H2 O)
HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLU A 42 1 8 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLN A 143 5 5 HELIX 8 8 LEU A 149 LYS A 153 5 5 HELIX 9 9 ASP A 183 LEU A 193 1 11 HELIX 10 10 MET A 200 GLY A 221 1 22 HELIX 11 11 ASP A 234 LEU A 236 5 3 HELIX 12 12 SER A 253 GLY A 268 1 16 HELIX 13 13 ASN A 279 GLY A 283 5 5 HELIX 14 14 THR A 285 PHE A 304 1 20 HELIX 15 15 GLY B 23 GLU B 25 5 3 HELIX 16 16 LYS B 26 ALA B 34 1 9 HELIX 17 17 GLY B 35 GLU B 42 1 8 HELIX 18 18 ASN B 69 ASN B 90 1 22 HELIX 19 19 ASP B 100 SER B 102 5 3 HELIX 20 20 MET B 103 HIS B 115 1 13 HELIX 21 21 ASN B 139 LEU B 148 5 10 HELIX 22 22 LEU B 149 LYS B 153 5 5 HELIX 23 23 ASP B 183 LEU B 193 1 11 HELIX 24 24 MET B 200 GLY B 221 1 22 HELIX 25 25 ASP B 234 LEU B 236 5 3 HELIX 26 26 SER B 253 GLY B 268 1 16 HELIX 27 27 ASN B 279 GLY B 283 5 5 HELIX 28 28 THR B 285 PHE B 304 1 20 HELIX 29 29 GLY C 23 GLU C 25 5 3 HELIX 30 30 LYS C 26 ALA C 34 1 9 HELIX 31 31 GLY C 35 GLU C 42 1 8 HELIX 32 32 ASN C 69 ASN C 90 1 22 HELIX 33 33 ASP C 100 SER C 102 5 3 HELIX 34 34 MET C 103 HIS C 115 1 13 HELIX 35 35 ASN C 139 GLN C 143 5 5 HELIX 36 36 LEU C 149 LYS C 153 5 5 HELIX 37 37 ASP C 183 LEU C 193 1 11 HELIX 38 38 SER C 199 GLY C 221 1 23 HELIX 39 39 ASP C 234 LEU C 236 5 3 HELIX 40 40 SER C 253 GLY C 268 1 16 HELIX 41 41 ASN C 279 GLY C 283 5 5 HELIX 42 42 THR C 285 PHE C 304 1 20
SHEET 1 A 8 ASN A 46 ASP A 52 0 SHEET 2 A 8 PRO A 7 ALA A 13 1 N ILE A 8 O ASN A 46 SHEET 3 A 8 ILE A 93 GLY A 98 1 O ILE A 93 N PRO A 7 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N LEU A 229 O ASP A 274 SHEET 6 A 8 CYS A 119 VAL A 123 1 N VAL A 123 O ASP A 232 SHEET 7 A 8 ILE A 174 LEU A 179 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 SER A 199 1 O PHE A 198 N GLY A 178 SHEET 1 B 8 ASN B 46 ASP B 52 0 SHEET 2 B 8 PRO B 7 ALA B 13 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 GLY B 98 1 O ILE B 93 N PRO B 7 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N LEU B 229 O GLY B 272 SHEET 6 B 8 CYS B 119 VAL B 123 1 N VAL B 123 O ASP B 232 SHEET 7 B 8 ILE B 174 LEU B 179 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 SER B 199 1 O PHE B 198 N GLY B 178 SHEET 1 C 7 ASN C 46 ASP C 52 0 SHEET 2 C 7 PRO C 7 ALA C 13 1 N ILE C 8 O ASN C 46 SHEET 3 C 7 ILE C 93 GLY C 98 1 O ILE C 93 N PRO C 7 SHEET 4 C 7 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 7 ILE C 227 ASP C 232 1 N ILE C 227 O SER C 271 SHEET 6 C 7 CYS C 119 VAL C 123 1 N VAL C 123 O ASP C 232 SHEET 7 C 7 ILE C 174 ILE C 177 1 O VAL C 175 N TRP C 122
LINK MN MN A 500 OD1 ASP A 234 1555 1555 2.48 LINK MN MN A 500 OD2 ASP A 234 1555 1555 2.25 LINK MN MN A 500 OD2 ASP A 232 1555 1555 2.28 LINK MN MN A 500 OD1 ASP A 124 1555 1555 2.29 LINK MN MN A 500 ND1 HIS A 126 1555 1555 2.13 LINK MN MN A 500 O HOH A 729 1555 1555 2.67 LINK MN MN A 501 ND1 HIS A 101 1555 1555 2.27 LINK MN MN A 501 OD2 ASP A 232 1555 1555 2.31 LINK MN MN A 501 OD2 ASP A 124 1555 1555 2.13 LINK MN MN A 501 OD2 ASP A 128 1555 1555 2.15 LINK MN MN A 501 O HOH A 729 1555 1555 2.38 LINK MN MN B 502 O HOH B 730 1555 1555 2.72 LINK MN MN B 502 OD2 ASP B 232 1555 1555 2.13 LINK MN MN B 502 OD1 ASP B 234 1555 1555 2.46 LINK MN MN B 502 OD2 ASP B 234 1555 1555 2.21 LINK MN MN B 502 OD1 ASP B 124 1555 1555 2.21 LINK MN MN B 502 ND1 HIS B 126 1555 1555 2.10 LINK MN MN B 503 ND1 HIS B 101 1555 1555 2.31 LINK MN MN B 503 OD2 ASP B 128 1555 1555 2.20 LINK MN MN B 503 OD2 ASP B 232 1555 1555 2.34 LINK MN MN B 503 OD2 ASP B 124 1555 1555 2.13 LINK MN MN B 503 O HOH B 730 1555 1555 2.38 LINK MN MN C 504 ND1 HIS C 126 1555 1555 2.13 LINK MN MN C 504 OD2 ASP C 232 1555 1555 2.24 LINK MN MN C 504 OD1 ASP C 234 1555 1555 2.50 LINK MN MN C 504 OD2 ASP C 234 1555 1555 2.15 LINK MN MN C 504 OD1 ASP C 124 1555 1555 2.29 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.28 LINK MN MN C 505 O HOH C 728 1555 1555 2.28 LINK MN MN C 505 ND1 HIS C 101 1555 1555 2.30 LINK MN MN C 505 OD2 ASP C 128 1555 1555 2.25 LINK MN MN C 505 OD2 ASP C 124 1555 1555 2.10
SITE 1 AC1 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC1 6 MN A 501 HOH A 729 SITE 1 AC2 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC2 6 MN A 500 HOH A 729 SITE 1 AC3 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC3 6 MN B 503 HOH B 730 SITE 1 AC4 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC4 6 MN B 502 HOH B 730 SITE 1 AC5 6 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC5 6 MN C 505 HOH C 728 SITE 1 AC6 6 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC6 6 MN C 504 HOH C 728 SITE 1 AC7 8 HIS A 126 ASN A 130 SER A 137 HIS A 141 SITE 2 AC7 8 ASP A 183 GLU A 186 HOH A 708 HOH A 711 SITE 1 AC8 8 HIS B 126 ASN B 130 SER B 137 HIS B 141 SITE 2 AC8 8 ASP B 183 GLU B 186 HOH B 709 HOH B 712 SITE 1 AC9 8 HIS C 126 ASN C 130 SER C 137 HIS C 141 SITE 2 AC9 8 ASP C 183 GLU C 186 HOH C 710 HOH C 713
CRYST1 87.800 87.800 110.500 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011390 0.006576 0.000000 0.00000
SCALE2 0.000000 0.013151 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009050 0.00000