10 20 30 40 50 60 70 80 1T4P - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 30-APR-04 1T4P
TITLE ARGINASE-DEHYDRO-ABH COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGINASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LIVER-TYPE ARGINASE; COMPND 5 EC: 3.5.3.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ARG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ARGINASE, DEHYDRO-ABH, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.CAMA,S.PETHE,J.-L.BOUCHER,S.HAN,F.A.EMIG,D.E.ASH, AUTHOR 2 R.E.VIOLA,D.MANSUY,D.W.CHRISTIANSON
REVDAT 2 24-FEB-09 1T4P 1 VERSN REVDAT 1 12-APR-05 1T4P 0
JRNL AUTH E.CAMA,S.PETHE,J.-L.BOUCHER,S.HAN,F.A.EMIG,D.E.ASH, JRNL AUTH 2 R.E.VIOLA,D.MANSUY,D.W.CHRISTIANSON JRNL TITL INHIBITOR COORDINATION INTERACTIONS IN THE JRNL TITL 2 BINUCLEAR MANGANESE CLUSTER OF ARGINASE JRNL REF BIOCHEMISTRY V. 43 8987 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15248756 JRNL DOI 10.1021/BI0491705
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1903917.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 27963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2771 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3879 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 438 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.19000 REMARK 3 B22 (A**2) : -18.19000 REMARK 3 B33 (A**2) : 36.38000 REMARK 3 B12 (A**2) : -2.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.17 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.640 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.770 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 27.27 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CISPEP2.PARAM REMARK 3 PARAMETER FILE 5 : MMD.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CISPEP.PARAM REMARK 3 TOPOLOGY FILE 5 : MMD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1T4P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022308.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.982 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE, PEG8000, MNCL2, DEHYDRO- REMARK 280 ABH, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.84000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 25 CD GLU A 25 OE1 -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 15.27 -149.01 REMARK 500 GLN A 65 -96.63 56.93 REMARK 500 PRO A 167 106.47 -46.69 REMARK 500 ARG A 180 8.36 -169.98 REMARK 500 PHE A 304 40.63 -109.48 REMARK 500 SER B 16 12.12 -147.55 REMARK 500 GLN B 65 -100.02 59.34 REMARK 500 PRO B 167 108.28 -48.87 REMARK 500 ARG B 180 2.38 -166.31 REMARK 500 VAL B 233 -17.23 -49.85 REMARK 500 TYR B 318 0.30 -69.99 REMARK 500 PRO C 14 77.76 -69.06 REMARK 500 SER C 16 15.62 -146.83 REMARK 500 GLN C 65 -101.67 60.02 REMARK 500 ASN C 90 36.47 -85.63 REMARK 500 HIS C 101 -0.88 -59.12 REMARK 500 ARG C 180 5.00 -167.55 REMARK 500 THR C 246 69.06 -117.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 98 GLY A 99 90.86 REMARK 500 GLY B 98 GLY B 99 90.30 REMARK 500 GLY C 98 GLY C 99 90.17 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 101 ND1 REMARK 620 2 ASP A 232 OD2 102.6 REMARK 620 3 2BH A1000 O11 114.3 96.6 REMARK 620 4 ASP A 128 OD2 90.3 153.3 99.3 REMARK 620 5 ASP A 124 OD2 89.9 80.2 155.7 76.5 REMARK 620 6 2BH A1000 O12 170.2 73.9 57.9 96.7 98.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD2 REMARK 620 2 ASP A 234 OD2 78.6 REMARK 620 3 ASP A 124 OD1 93.9 138.0 REMARK 620 4 HIS A 126 ND1 168.5 109.1 85.9 REMARK 620 5 ASP A 234 OD1 91.5 58.2 81.0 99.8 REMARK 620 6 2BH A1000 O12 72.7 114.2 102.3 96.1 164.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 126 ND1 REMARK 620 2 ASP B 232 OD2 172.6 REMARK 620 3 ASP B 124 OD1 92.1 89.9 REMARK 620 4 ASP B 234 OD1 101.4 86.0 79.5 REMARK 620 5 ASP B 234 OD2 100.9 82.7 134.0 54.8 REMARK 620 6 2BH B1001 O12 100.6 72.0 104.3 157.5 116.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 101 ND1 REMARK 620 2 ASP B 124 OD2 89.5 REMARK 620 3 ASP B 128 OD2 87.9 76.1 REMARK 620 4 ASP B 232 OD2 107.8 78.4 149.8 REMARK 620 5 2BH B1001 O12 171.2 99.3 95.2 73.4 REMARK 620 6 2BH B1001 O11 113.9 155.8 97.6 99.2 57.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 101 ND1 REMARK 620 2 2BH C1002 O11 112.3 REMARK 620 3 ASP C 128 OD2 88.6 98.4 REMARK 620 4 ASP C 124 OD2 91.8 155.8 78.7 REMARK 620 5 2BH C1002 O12 169.1 58.0 97.6 98.3 REMARK 620 6 ASP C 232 OD2 99.8 95.1 160.0 83.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2BH C1002 O12 REMARK 620 2 ASP C 124 OD1 101.9 REMARK 620 3 ASP C 234 OD1 162.5 78.2 REMARK 620 4 ASP C 234 OD2 117.8 133.1 56.4 REMARK 620 5 ASP C 232 OD2 71.5 91.2 91.0 79.6 REMARK 620 6 HIS C 126 ND1 99.2 90.4 98.3 105.9 170.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 505 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2BH A 1000 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2BH B 1001 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2BH C 1002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D3V RELATED DB: PDB REMARK 900 ARGINASE-ABH COMPLEX REMARK 900 RELATED ID: 1T4R RELATED DB: PDB REMARK 900 ARGINASE-DESCARBOXY-NOR-NOHA COMPLEX REMARK 900 RELATED ID: 1T4S RELATED DB: PDB REMARK 900 ARGINASE-L-VALINE COMPLEX REMARK 900 RELATED ID: 1T4T RELATED DB: PDB REMARK 900 ARGINASE-DINOR-NOHA COMPLEX REMARK 900 RELATED ID: 1T5F RELATED DB: PDB REMARK 900 ARGINASE I-AOH COMPLEX REMARK 900 RELATED ID: 1T5G RELATED DB: PDB REMARK 900 ARGINASE-F2-L-ARGININE COMPLEX
DBREF 1T4P A 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1T4P B 6 319 UNP P07824 ARGI1_RAT 6 319 DBREF 1T4P C 6 319 UNP P07824 ARGI1_RAT 6 319
SEQRES 1 A 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 A 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 A 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 A 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 A 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 A 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 A 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 A 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 A 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 A 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 A 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 A 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 A 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 A 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 A 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 A 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 A 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 A 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 A 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 A 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 A 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 A 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 A 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 A 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 A 314 TYR LEU SEQRES 1 B 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 B 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 B 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 B 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 B 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 B 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 B 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 B 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 B 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 B 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 B 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 B 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 B 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 B 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 B 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 B 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 B 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 B 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 B 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 B 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 B 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 B 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 B 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 B 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 B 314 TYR LEU SEQRES 1 C 314 LYS PRO ILE GLU ILE ILE GLY ALA PRO PHE SER LYS GLY SEQRES 2 C 314 GLN PRO ARG GLY GLY VAL GLU LYS GLY PRO ALA ALA LEU SEQRES 3 C 314 ARG LYS ALA GLY LEU VAL GLU LYS LEU LYS GLU THR GLU SEQRES 4 C 314 TYR ASN VAL ARG ASP HIS GLY ASP LEU ALA PHE VAL ASP SEQRES 5 C 314 VAL PRO ASN ASP SER PRO PHE GLN ILE VAL LYS ASN PRO SEQRES 6 C 314 ARG SER VAL GLY LYS ALA ASN GLU GLN LEU ALA ALA VAL SEQRES 7 C 314 VAL ALA GLU THR GLN LYS ASN GLY THR ILE SER VAL VAL SEQRES 8 C 314 LEU GLY GLY ASP HIS SER MET ALA ILE GLY SER ILE SER SEQRES 9 C 314 GLY HIS ALA ARG VAL HIS PRO ASP LEU CYS VAL ILE TRP SEQRES 10 C 314 VAL ASP ALA HIS THR ASP ILE ASN THR PRO LEU THR THR SEQRES 11 C 314 SER SER GLY ASN LEU HIS GLY GLN PRO VAL ALA PHE LEU SEQRES 12 C 314 LEU LYS GLU LEU LYS GLY LYS PHE PRO ASP VAL PRO GLY SEQRES 13 C 314 PHE SER TRP VAL THR PRO CYS ILE SER ALA LYS ASP ILE SEQRES 14 C 314 VAL TYR ILE GLY LEU ARG ASP VAL ASP PRO GLY GLU HIS SEQRES 15 C 314 TYR ILE ILE LYS THR LEU GLY ILE LYS TYR PHE SER MET SEQRES 16 C 314 THR GLU VAL ASP LYS LEU GLY ILE GLY LYS VAL MET GLU SEQRES 17 C 314 GLU THR PHE SER TYR LEU LEU GLY ARG LYS LYS ARG PRO SEQRES 18 C 314 ILE HIS LEU SER PHE ASP VAL ASP GLY LEU ASP PRO VAL SEQRES 19 C 314 PHE THR PRO ALA THR GLY THR PRO VAL VAL GLY GLY LEU SEQRES 20 C 314 SER TYR ARG GLU GLY LEU TYR ILE THR GLU GLU ILE TYR SEQRES 21 C 314 LYS THR GLY LEU LEU SER GLY LEU ASP ILE MET GLU VAL SEQRES 22 C 314 ASN PRO THR LEU GLY LYS THR PRO GLU GLU VAL THR ARG SEQRES 23 C 314 THR VAL ASN THR ALA VAL ALA LEU THR LEU SER CYS PHE SEQRES 24 C 314 GLY THR LYS ARG GLU GLY ASN HIS LYS PRO GLU THR ASP SEQRES 25 C 314 TYR LEU
HET MN B 500 1 HET MN B 501 1 HET MN A 502 1 HET MN C 503 1 HET MN A 504 1 HET MN C 505 1 HET 2BH A1000 13 HET 2BH B1001 13 HET 2BH C1002 13
HETNAM MN MANGANESE (II) ION HETNAM 2BH [(1E,5S)-5-AMINO-5-CARBOXYPENT-1-ENYL](TRIHYDROXY) HETNAM 2 2BH BORATE(1-)
HETSYN 2BH DEHYDRO-2(S)-AMINO-6-BORONOHEXANOIC ACID
FORMUL 4 MN 6(MN 2+) FORMUL 10 2BH 3(C6 H13 B N O5 1-) FORMUL 13 HOH *105(H2 O)
HELIX 1 1 GLY A 23 GLU A 25 5 3 HELIX 2 2 LYS A 26 ALA A 34 1 9 HELIX 3 3 GLY A 35 GLU A 42 1 8 HELIX 4 4 ASN A 69 ASN A 90 1 22 HELIX 5 5 ASP A 100 SER A 102 5 3 HELIX 6 6 MET A 103 HIS A 115 1 13 HELIX 7 7 ASN A 139 GLY A 142 5 4 HELIX 8 8 GLN A 143 LEU A 149 1 7 HELIX 9 9 LYS A 150 LYS A 153 5 4 HELIX 10 10 SER A 170 LYS A 172 5 3 HELIX 11 11 ASP A 183 GLY A 194 1 12 HELIX 12 12 SER A 199 GLY A 207 1 9 HELIX 13 13 GLY A 207 LEU A 220 1 14 HELIX 14 14 ASP A 234 LEU A 236 5 3 HELIX 15 15 SER A 253 THR A 267 1 15 HELIX 16 16 ASN A 279 GLY A 283 5 5 HELIX 17 17 THR A 285 PHE A 304 1 20 HELIX 18 18 GLY B 23 GLU B 25 5 3 HELIX 19 19 LYS B 26 ALA B 34 1 9 HELIX 20 20 GLY B 35 GLU B 42 1 8 HELIX 21 21 ASN B 69 ASN B 90 1 22 HELIX 22 22 ASP B 100 SER B 102 5 3 HELIX 23 23 MET B 103 HIS B 115 1 13 HELIX 24 24 ASN B 139 LEU B 148 5 10 HELIX 25 25 LEU B 149 LYS B 153 5 5 HELIX 26 26 SER B 170 LYS B 172 5 3 HELIX 27 27 ASP B 183 LEU B 193 1 11 HELIX 28 28 MET B 200 GLY B 207 1 8 HELIX 29 29 GLY B 207 LEU B 220 1 14 HELIX 30 30 ASP B 234 LEU B 236 5 3 HELIX 31 31 SER B 253 THR B 267 1 15 HELIX 32 32 ASN B 279 GLY B 283 5 5 HELIX 33 33 THR B 285 PHE B 304 1 20 HELIX 34 34 GLY C 23 GLU C 25 5 3 HELIX 35 35 LYS C 26 ALA C 34 1 9 HELIX 36 36 GLY C 35 GLU C 42 1 8 HELIX 37 37 ASN C 69 ASN C 90 1 22 HELIX 38 38 ASP C 100 SER C 102 5 3 HELIX 39 39 MET C 103 HIS C 115 1 13 HELIX 40 40 ASN C 139 GLY C 142 5 4 HELIX 41 41 GLN C 143 LEU C 149 1 7 HELIX 42 42 LYS C 150 LYS C 153 5 4 HELIX 43 43 SER C 170 LYS C 172 5 3 HELIX 44 44 ASP C 183 GLY C 194 1 12 HELIX 45 45 MET C 200 LEU C 220 1 21 HELIX 46 46 ASP C 234 LEU C 236 5 3 HELIX 47 47 SER C 253 THR C 267 1 15 HELIX 48 48 ASN C 279 GLY C 283 5 5 HELIX 49 49 THR C 285 PHE C 304 1 20
SHEET 1 A 8 ASN A 46 ASP A 52 0 SHEET 2 A 8 PRO A 7 ALA A 13 1 N ILE A 8 O ARG A 48 SHEET 3 A 8 ILE A 93 GLY A 98 1 O VAL A 95 N ILE A 11 SHEET 4 A 8 LEU A 270 MET A 276 1 O LEU A 273 N VAL A 96 SHEET 5 A 8 ILE A 227 ASP A 232 1 N LEU A 229 O GLY A 272 SHEET 6 A 8 CYS A 119 VAL A 123 1 N CYS A 119 O HIS A 228 SHEET 7 A 8 ILE A 174 ILE A 177 1 O VAL A 175 N TRP A 122 SHEET 8 A 8 LYS A 196 PHE A 198 1 O PHE A 198 N TYR A 176 SHEET 1 B 8 ASN B 46 ASP B 52 0 SHEET 2 B 8 PRO B 7 ALA B 13 1 N ILE B 8 O ASN B 46 SHEET 3 B 8 ILE B 93 GLY B 98 1 O VAL B 95 N ILE B 11 SHEET 4 B 8 LEU B 270 MET B 276 1 O LEU B 273 N VAL B 96 SHEET 5 B 8 ILE B 227 ASP B 232 1 N PHE B 231 O ASP B 274 SHEET 6 B 8 CYS B 119 VAL B 123 1 N CYS B 119 O HIS B 228 SHEET 7 B 8 ILE B 174 LEU B 179 1 O VAL B 175 N TRP B 122 SHEET 8 B 8 LYS B 196 SER B 199 1 O PHE B 198 N TYR B 176 SHEET 1 C 8 ASN C 46 ASP C 52 0 SHEET 2 C 8 PRO C 7 ALA C 13 1 N ILE C 8 O ARG C 48 SHEET 3 C 8 ILE C 93 GLY C 98 1 O VAL C 95 N ILE C 11 SHEET 4 C 8 LEU C 270 MET C 276 1 O LEU C 273 N VAL C 96 SHEET 5 C 8 ILE C 227 ASP C 232 1 N LEU C 229 O GLY C 272 SHEET 6 C 8 CYS C 119 VAL C 123 1 N CYS C 119 O HIS C 228 SHEET 7 C 8 ILE C 174 LEU C 179 1 O VAL C 175 N TRP C 122 SHEET 8 C 8 LYS C 196 SER C 199 1 O PHE C 198 N GLY C 178
LINK MN MN A 502 ND1 HIS A 101 1555 1555 2.30 LINK MN MN A 502 OD2 ASP A 232 1555 1555 2.14 LINK MN MN A 502 O11 2BH A1000 1555 1555 2.49 LINK MN MN A 502 OD2 ASP A 128 1555 1555 2.27 LINK MN MN A 502 OD2 ASP A 124 1555 1555 2.43 LINK MN MN A 502 O12 2BH A1000 1555 1555 2.22 LINK MN MN A 504 OD2 ASP A 232 1555 1555 2.37 LINK MN MN A 504 OD2 ASP A 234 1555 1555 2.06 LINK MN MN A 504 OD1 ASP A 124 1555 1555 2.45 LINK MN MN A 504 ND1 HIS A 126 1555 1555 2.21 LINK MN MN A 504 OD1 ASP A 234 1555 1555 2.39 LINK MN MN A 504 O12 2BH A1000 1555 1555 2.04 LINK MN MN B 500 ND1 HIS B 126 1555 1555 2.12 LINK MN MN B 500 OD2 ASP B 232 1555 1555 2.35 LINK MN MN B 500 OD1 ASP B 124 1555 1555 2.36 LINK MN MN B 500 OD1 ASP B 234 1555 1555 2.51 LINK MN MN B 500 OD2 ASP B 234 1555 1555 2.17 LINK MN MN B 500 O12 2BH B1001 1555 1555 2.00 LINK MN MN B 501 ND1 HIS B 101 1555 1555 2.26 LINK MN MN B 501 OD2 ASP B 124 1555 1555 2.35 LINK MN MN B 501 OD2 ASP B 128 1555 1555 2.33 LINK MN MN B 501 OD2 ASP B 232 1555 1555 2.13 LINK MN MN B 501 O12 2BH B1001 1555 1555 2.17 LINK MN MN B 501 O11 2BH B1001 1555 1555 2.47 LINK MN MN C 503 ND1 HIS C 101 1555 1555 2.30 LINK MN MN C 503 O11 2BH C1002 1555 1555 2.52 LINK MN MN C 503 OD2 ASP C 128 1555 1555 2.30 LINK MN MN C 503 OD2 ASP C 124 1555 1555 2.24 LINK MN MN C 503 O12 2BH C1002 1555 1555 2.18 LINK MN MN C 503 OD2 ASP C 232 1555 1555 2.09 LINK MN MN C 505 O12 2BH C1002 1555 1555 2.00 LINK MN MN C 505 OD1 ASP C 124 1555 1555 2.30 LINK MN MN C 505 OD1 ASP C 234 1555 1555 2.52 LINK MN MN C 505 OD2 ASP C 234 1555 1555 2.09 LINK MN MN C 505 OD2 ASP C 232 1555 1555 2.51 LINK MN MN C 505 ND1 HIS C 126 1555 1555 2.24
SITE 1 AC1 6 ASP B 124 HIS B 126 ASP B 232 ASP B 234 SITE 2 AC1 6 MN B 501 2BH B1001 SITE 1 AC2 6 HIS B 101 ASP B 124 ASP B 128 ASP B 232 SITE 2 AC2 6 MN B 500 2BH B1001 SITE 1 AC3 6 HIS A 101 ASP A 124 ASP A 128 ASP A 232 SITE 2 AC3 6 MN A 504 2BH A1000 SITE 1 AC4 6 HIS C 101 ASP C 124 ASP C 128 ASP C 232 SITE 2 AC4 6 MN C 505 2BH C1002 SITE 1 AC5 6 ASP A 124 HIS A 126 ASP A 232 ASP A 234 SITE 2 AC5 6 MN A 502 2BH A1000 SITE 1 AC6 6 ASP C 124 HIS C 126 ASP C 232 ASP C 234 SITE 2 AC6 6 MN C 503 2BH C1002 SITE 1 AC7 18 HIS A 101 ASP A 124 HIS A 126 ASP A 128 SITE 2 AC7 18 ASN A 130 SER A 137 HIS A 141 ASP A 183 SITE 3 AC7 18 ASP A 232 ASP A 234 GLU A 277 MN A 502 SITE 4 AC7 18 MN A 504 HOH A 776 HOH A 787 HOH A 788 SITE 5 AC7 18 HOH A 789 HOH A 802 SITE 1 AC8 16 HIS B 101 ASP B 124 HIS B 126 ASP B 128 SITE 2 AC8 16 ASN B 130 SER B 137 HIS B 141 ASP B 183 SITE 3 AC8 16 ASP B 232 ASP B 234 GLU B 277 MN B 500 SITE 4 AC8 16 MN B 501 HOH B 790 HOH B 791 HOH B 793 SITE 1 AC9 17 HIS C 101 ASP C 124 HIS C 126 ASP C 128 SITE 2 AC9 17 ASN C 130 SER C 137 HIS C 141 ASP C 183 SITE 3 AC9 17 ASP C 232 ASP C 234 GLU C 277 MN C 503 SITE 4 AC9 17 MN C 505 HOH C 774 HOH C 783 HOH C 803 SITE 5 AC9 17 HOH C 804
CRYST1 88.400 88.400 110.520 90.00 90.00 120.00 P 32 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011312 0.006531 0.000000 0.00000
SCALE2 0.000000 0.013062 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009048 0.00000