10 20 30 40 50 60 70 80 1T4B - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 29-APR-04 1T4B
TITLE 1.6 ANGSTROM STRUCTURE OF ESHERICHIA COLI ASPARTATE- TITLE 2 SEMIALDEHYDE DEHYDROGENASE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE-SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASA DEHYDROGENASE, ASADH; COMPND 5 EC: 1.2.1.11; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ASD, HOM, B3433, Z4797, ECS4278, SF3456, S4307; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMUT20
KEYWDS ASADH, ASPARTATE SEMIALDEHYDE DEHYDROGENASE, HOSR, LYSINE KEYWDS 2 BIOSYNTHESIS, NADP+ OXIDOREDUCTASE (PHOSPHORYLATING), KEYWDS 3 DOMAIN MOVEMENT
EXPDTA X-RAY DIFFRACTION
AUTHOR C.E.NICHOLS,B.DHALIWAL,M.LOCKYER,A.R.HAWKINS,D.K.STAMMERS
REVDAT 3 24-FEB-09 1T4B 1 VERSN REVDAT 2 17-AUG-04 1T4B 1 JRNL REVDAT 1 13-JUL-04 1T4B 0
JRNL AUTH C.E.NICHOLS,B.DHALIWAL,M.LOCKYER,A.R.HAWKINS, JRNL AUTH 2 D.K.STAMMERS JRNL TITL HIGH-RESOLUTION STRUCTURES REVEAL DETAILS OF JRNL TITL 2 DOMAIN CLOSURE AND "HALF-OF-SITES-REACTIVITY" IN JRNL TITL 3 ESCHERICHIA COLI ASPARTATE BETA-SEMIALDEHYDE JRNL TITL 4 DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 341 797 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15288787 JRNL DOI 10.1016/J.JMB.2004.05.073
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2450802.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 86606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8689 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2841 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 323 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 967 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.15000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 3.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.80 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 61.74 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1T4B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022294.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.250 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 2.920 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1T4D REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KCL, TRIS.HCL, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 111 68.29 -165.81 REMARK 500 PRO A 228 42.19 -75.40 REMARK 500 TRP A 229 119.16 -160.50 REMARK 500 ASP A 231 177.59 76.22 REMARK 500 LEU A 316 57.82 -100.86 REMARK 500 LEU A 352 -94.37 -92.29 REMARK 500 ALA A 355 -76.33 -153.58 REMARK 500 SER B 38 6.10 -155.01 REMARK 500 LEU B 111 68.77 -162.44 REMARK 500 PRO B 228 44.78 -78.28 REMARK 500 TRP B 229 118.99 -162.04 REMARK 500 ASP B 231 179.41 75.06 REMARK 500 LEU B 316 58.16 -101.75 REMARK 500 LEU B 352 -94.80 -91.58 REMARK 500 ALA B 355 -73.24 -156.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B5268 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A5277 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A5352 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B5350 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A5368 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A5371 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B5379 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A5389 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH B5394 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A5402 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A5403 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A5405 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A5419 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH A5427 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B5426 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH A5432 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B5431 DISTANCE = 9.02 ANGSTROMS REMARK 525 HOH B5434 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B5438 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A5442 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A5443 DISTANCE = 9.22 ANGSTROMS REMARK 525 HOH B5440 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH B5442 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH B5443 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A5449 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A5450 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A5451 DISTANCE = 12.16 ANGSTROMS REMARK 525 HOH B5452 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH A5476 DISTANCE = 5.04 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A5004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A5011 O REMARK 620 2 HOH A5474 O 84.2 REMARK 620 3 HOH A5473 O 88.7 89.6 REMARK 620 4 HOH A5472 O 168.7 90.8 81.1 REMARK 620 5 HOH B5456 O 98.5 78.8 165.6 90.5 REMARK 620 6 HOH A5290 O 87.6 171.5 92.3 97.6 100.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B5001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B5451 O REMARK 620 2 HOH B5450 O 84.6 REMARK 620 3 HOH B5452 O 101.6 93.5 REMARK 620 4 HOH A5469 O 94.2 170.0 96.5 REMARK 620 5 HOH B5130 O 156.4 83.5 99.4 94.1 REMARK 620 6 HOH B5045 O 81.1 87.0 177.3 83.0 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B5002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B5228 O REMARK 620 2 HOH B5457 O 112.7 REMARK 620 3 HOH B5391 O 71.5 66.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A5005 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A5135 O REMARK 620 2 HOH A5138 O 99.5 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 5001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 5002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 5005
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI ASPARTATE-BETA- REMARK 900 SEMIALDEHYDE DEHYDROGENASE (ECDHQS), AT 1.95D.
DBREF 1T4B A 1 367 UNP P0A9Q9 DHAS_ECOLI 1 367 DBREF 1T4B B 1 367 UNP P0A9Q9 DHAS_ECOLI 1 367
SEQADV 1T4B GLN A 2 UNP P0A9Q9 LYS 2 ENGINEERED SEQADV 1T4B GLN B 2 UNP P0A9Q9 LYS 2 ENGINEERED
SEQRES 1 A 367 MET GLN ASN VAL GLY PHE ILE GLY TRP ARG GLY MET VAL SEQRES 2 A 367 GLY SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP SEQRES 3 A 367 PHE ASP ALA ILE ARG PRO VAL PHE PHE SER THR SER GLN SEQRES 4 A 367 LEU GLY GLN ALA ALA PRO SER PHE GLY GLY THR THR GLY SEQRES 5 A 367 THR LEU GLN ASP ALA PHE ASP LEU GLU ALA LEU LYS ALA SEQRES 6 A 367 LEU ASP ILE ILE VAL THR CYS GLN GLY GLY ASP TYR THR SEQRES 7 A 367 ASN GLU ILE TYR PRO LYS LEU ARG GLU SER GLY TRP GLN SEQRES 8 A 367 GLY TYR TRP ILE ASP ALA ALA SER SER LEU ARG MET LYS SEQRES 9 A 367 ASP ASP ALA ILE ILE ILE LEU ASP PRO VAL ASN GLN ASP SEQRES 10 A 367 VAL ILE THR ASP GLY LEU ASN ASN GLY ILE ARG THR PHE SEQRES 11 A 367 VAL GLY GLY ASN CYS THR VAL SER LEU MET LEU MET SER SEQRES 12 A 367 LEU GLY GLY LEU PHE ALA ASN ASP LEU VAL ASP TRP VAL SEQRES 13 A 367 SER VAL ALA THR TYR GLN ALA ALA SER GLY GLY GLY ALA SEQRES 14 A 367 ARG HIS MET ARG GLU LEU LEU THR GLN MET GLY HIS LEU SEQRES 15 A 367 TYR GLY HIS VAL ALA ASP GLU LEU ALA THR PRO SER SER SEQRES 16 A 367 ALA ILE LEU ASP ILE GLU ARG LYS VAL THR THR LEU THR SEQRES 17 A 367 ARG SER GLY GLU LEU PRO VAL ASP ASN PHE GLY VAL PRO SEQRES 18 A 367 LEU ALA GLY SER LEU ILE PRO TRP ILE ASP LYS GLN LEU SEQRES 19 A 367 ASP ASN GLY GLN SER ARG GLU GLU TRP LYS GLY GLN ALA SEQRES 20 A 367 GLU THR ASN LYS ILE LEU ASN THR SER SER VAL ILE PRO SEQRES 21 A 367 VAL ASP GLY LEU CYS VAL ARG VAL GLY ALA LEU ARG CYS SEQRES 22 A 367 HIS SER GLN ALA PHE THR ILE LYS LEU LYS LYS ASP VAL SEQRES 23 A 367 SER ILE PRO THR VAL GLU GLU LEU LEU ALA ALA HIS ASN SEQRES 24 A 367 PRO TRP ALA LYS VAL VAL PRO ASN ASP ARG GLU ILE THR SEQRES 25 A 367 MET ARG GLU LEU THR PRO ALA ALA VAL THR GLY THR LEU SEQRES 26 A 367 THR THR PRO VAL GLY ARG LEU ARG LYS LEU ASN MET GLY SEQRES 27 A 367 PRO GLU PHE LEU SER ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 A 367 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG MET LEU ARG SEQRES 29 A 367 GLN LEU ALA SEQRES 1 B 367 MET GLN ASN VAL GLY PHE ILE GLY TRP ARG GLY MET VAL SEQRES 2 B 367 GLY SER VAL LEU MET GLN ARG MET VAL GLU GLU ARG ASP SEQRES 3 B 367 PHE ASP ALA ILE ARG PRO VAL PHE PHE SER THR SER GLN SEQRES 4 B 367 LEU GLY GLN ALA ALA PRO SER PHE GLY GLY THR THR GLY SEQRES 5 B 367 THR LEU GLN ASP ALA PHE ASP LEU GLU ALA LEU LYS ALA SEQRES 6 B 367 LEU ASP ILE ILE VAL THR CYS GLN GLY GLY ASP TYR THR SEQRES 7 B 367 ASN GLU ILE TYR PRO LYS LEU ARG GLU SER GLY TRP GLN SEQRES 8 B 367 GLY TYR TRP ILE ASP ALA ALA SER SER LEU ARG MET LYS SEQRES 9 B 367 ASP ASP ALA ILE ILE ILE LEU ASP PRO VAL ASN GLN ASP SEQRES 10 B 367 VAL ILE THR ASP GLY LEU ASN ASN GLY ILE ARG THR PHE SEQRES 11 B 367 VAL GLY GLY ASN CYS THR VAL SER LEU MET LEU MET SER SEQRES 12 B 367 LEU GLY GLY LEU PHE ALA ASN ASP LEU VAL ASP TRP VAL SEQRES 13 B 367 SER VAL ALA THR TYR GLN ALA ALA SER GLY GLY GLY ALA SEQRES 14 B 367 ARG HIS MET ARG GLU LEU LEU THR GLN MET GLY HIS LEU SEQRES 15 B 367 TYR GLY HIS VAL ALA ASP GLU LEU ALA THR PRO SER SER SEQRES 16 B 367 ALA ILE LEU ASP ILE GLU ARG LYS VAL THR THR LEU THR SEQRES 17 B 367 ARG SER GLY GLU LEU PRO VAL ASP ASN PHE GLY VAL PRO SEQRES 18 B 367 LEU ALA GLY SER LEU ILE PRO TRP ILE ASP LYS GLN LEU SEQRES 19 B 367 ASP ASN GLY GLN SER ARG GLU GLU TRP LYS GLY GLN ALA SEQRES 20 B 367 GLU THR ASN LYS ILE LEU ASN THR SER SER VAL ILE PRO SEQRES 21 B 367 VAL ASP GLY LEU CYS VAL ARG VAL GLY ALA LEU ARG CYS SEQRES 22 B 367 HIS SER GLN ALA PHE THR ILE LYS LEU LYS LYS ASP VAL SEQRES 23 B 367 SER ILE PRO THR VAL GLU GLU LEU LEU ALA ALA HIS ASN SEQRES 24 B 367 PRO TRP ALA LYS VAL VAL PRO ASN ASP ARG GLU ILE THR SEQRES 25 B 367 MET ARG GLU LEU THR PRO ALA ALA VAL THR GLY THR LEU SEQRES 26 B 367 THR THR PRO VAL GLY ARG LEU ARG LYS LEU ASN MET GLY SEQRES 27 B 367 PRO GLU PHE LEU SER ALA PHE THR VAL GLY ASP GLN LEU SEQRES 28 B 367 LEU TRP GLY ALA ALA GLU PRO LEU ARG ARG MET LEU ARG SEQRES 29 B 367 GLN LEU ALA
HET NA B5001 1 HET NA B5002 1 HET NA A5003 1 HET NA A5004 1 HET NA A5005 1
HETNAM NA SODIUM ION
FORMUL 3 NA 5(NA 1+) FORMUL 8 HOH *967(H2 O)
HELIX 1 1 GLY A 11 GLU A 24 1 14 HELIX 2 2 ARG A 25 ILE A 30 5 6 HELIX 3 3 PRO A 45 GLY A 49 5 5 HELIX 4 4 ASP A 59 ALA A 65 1 7 HELIX 5 5 GLY A 74 SER A 88 1 15 HELIX 6 6 LEU A 111 ASN A 125 1 15 HELIX 7 7 ASN A 134 ASN A 150 1 17 HELIX 8 8 ALA A 163 GLY A 167 5 5 HELIX 9 9 GLY A 168 VAL A 186 1 19 HELIX 10 10 VAL A 186 ALA A 191 1 6 HELIX 11 11 ALA A 196 GLY A 211 1 16 HELIX 12 12 SER A 239 ASN A 254 1 16 HELIX 13 13 SER A 287 ASN A 299 1 13 HELIX 14 14 ASP A 308 LEU A 316 1 9 HELIX 15 15 THR A 317 THR A 322 1 6 HELIX 16 16 ALA A 356 ALA A 367 1 12 HELIX 17 17 GLY B 11 GLU B 24 1 14 HELIX 18 18 SER B 46 THR B 50 5 5 HELIX 19 19 ASP B 59 ALA B 65 1 7 HELIX 20 20 GLY B 74 SER B 88 1 15 HELIX 21 21 LEU B 111 ASN B 125 1 15 HELIX 22 22 ASN B 134 ASN B 150 1 17 HELIX 23 23 ALA B 163 GLY B 167 5 5 HELIX 24 24 GLY B 168 ALA B 191 1 24 HELIX 25 25 ALA B 196 GLY B 211 1 16 HELIX 26 26 SER B 239 ASN B 254 1 16 HELIX 27 27 SER B 287 ASN B 299 1 13 HELIX 28 28 ASP B 308 LEU B 316 1 9 HELIX 29 29 THR B 317 THR B 322 1 6 HELIX 30 30 ALA B 355 ALA B 367 1 13
SHEET 1 A 7 GLN A 55 ASP A 56 0 SHEET 2 A 7 ARG A 31 SER A 36 1 N PHE A 34 O GLN A 55 SHEET 3 A 7 ASN A 3 ILE A 7 1 N VAL A 4 O VAL A 33 SHEET 4 A 7 ILE A 68 THR A 71 1 O VAL A 70 N GLY A 5 SHEET 5 A 7 TYR A 93 ASP A 96 1 O ILE A 95 N ILE A 69 SHEET 6 A 7 THR A 129 GLY A 132 1 O PHE A 130 N TRP A 94 SHEET 7 A 7 ALA A 107 ILE A 110 1 N ILE A 108 O VAL A 131 SHEET 1 B 5 VAL A 261 LEU A 264 0 SHEET 2 B 5 VAL A 153 TYR A 161 1 N THR A 160 O LEU A 264 SHEET 3 B 5 CYS A 273 LEU A 282 -1 O LYS A 281 N ASP A 154 SHEET 4 B 5 PHE A 341 ASP A 349 -1 O LEU A 342 N ILE A 280 SHEET 5 B 5 VAL A 329 LYS A 334 -1 N ARG A 333 O SER A 343 SHEET 1 C 2 LEU A 226 ILE A 227 0 SHEET 2 C 2 ARG A 267 VAL A 268 -1 O ARG A 267 N ILE A 227 SHEET 1 D 7 GLN B 55 ASP B 56 0 SHEET 2 D 7 ARG B 31 SER B 36 1 N PHE B 34 O GLN B 55 SHEET 3 D 7 ASN B 3 ILE B 7 1 N PHE B 6 O VAL B 33 SHEET 4 D 7 ILE B 68 THR B 71 1 O VAL B 70 N GLY B 5 SHEET 5 D 7 TYR B 93 ASP B 96 1 O ILE B 95 N ILE B 69 SHEET 6 D 7 THR B 129 GLY B 132 1 O PHE B 130 N TRP B 94 SHEET 7 D 7 ALA B 107 ILE B 110 1 N ILE B 108 O VAL B 131 SHEET 1 E 5 VAL B 261 LEU B 264 0 SHEET 2 E 5 VAL B 153 TYR B 161 1 N THR B 160 O LEU B 264 SHEET 3 E 5 CYS B 273 LEU B 282 -1 O LYS B 281 N ASP B 154 SHEET 4 E 5 GLY B 338 ASP B 349 -1 O GLU B 340 N LEU B 282 SHEET 5 E 5 VAL B 329 LEU B 335 -1 N ARG B 333 O SER B 343 SHEET 1 F 2 LEU B 226 ILE B 227 0 SHEET 2 F 2 ARG B 267 VAL B 268 -1 O ARG B 267 N ILE B 227
LINK NA NA A5004 O HOH A5011 1555 1555 2.57 LINK NA NA A5004 O HOH A5474 1555 1555 2.54 LINK NA NA B5001 O HOH B5451 1555 1555 2.72 LINK NA NA B5001 O HOH B5450 1555 1555 2.79 LINK NA NA B5001 O HOH B5452 1555 1555 2.85 LINK NA NA B5001 O HOH A5469 1555 1555 2.84 LINK NA NA B5001 O HOH B5130 1555 1555 2.73 LINK NA NA B5001 O HOH B5045 1555 1555 2.69 LINK NA NA B5002 O HOH B5228 1555 1555 2.96 LINK NA NA B5002 O HOH B5457 1555 1555 2.95 LINK NA NA B5002 O HOH B5391 1555 1555 2.89 LINK NA NA A5003 O HOH A5131 1555 1555 2.77 LINK NA NA A5004 O HOH A5473 1555 1555 2.65 LINK NA NA A5004 O HOH A5472 1555 1555 2.65 LINK NA NA A5004 O HOH B5456 1555 1555 2.86 LINK NA NA A5004 O HOH A5290 1555 1555 2.82 LINK NA NA A5005 O HOH A5135 1555 1555 2.80 LINK NA NA A5005 O HOH A5138 1555 1555 2.77
SITE 1 AC1 6 HOH A5469 HOH B5045 HOH B5130 HOH B5450 SITE 2 AC1 6 HOH B5451 HOH B5452 SITE 1 AC2 5 ASP B 105 HOH B5228 HOH B5281 HOH B5391 SITE 2 AC2 5 HOH B5457 SITE 1 AC3 4 HOH A5131 HOH B5148 HOH B5163 HOH B5186 SITE 1 AC4 6 HOH A5011 HOH A5290 HOH A5472 HOH A5473 SITE 2 AC4 6 HOH A5474 HOH B5456 SITE 1 AC5 8 ASP A 76 GLY A 184 HIS A 185 ASP A 188 SITE 2 AC5 8 HOH A5135 HOH A5138 HOH A5325 HOH A5412
CRYST1 56.500 70.100 180.900 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017699 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014273 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005529 0.00000