10 20 30 40 50 60 70 80 1T2X - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 23-APR-04 1T2X
TITLE GLACTOSE OXIDASE C383S MUTANT IDENTIFIED BY DIRECTED TITLE 2 EVOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FUSARIUM SP.; SOURCE 3 ORGANISM_TAXID: 29916; SOURCE 4 GENE: SAC1; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PPICZA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZAPROGO
KEYWDS 7 BLADE BETA PROPELLER, C383S MUTANT FORM, MUTANT FORM OF KEYWDS 2 COPPER CONTAINING ENZYME, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.WILKINSON,N.AKUMANYI,R.HURTADO-GUERRERO,H.DAWKES, AUTHOR 2 P.F.KNOWLES,S.E.V.PHILLIPS,M.J.MCPHERSON
REVDAT 3 24-FEB-09 1T2X 1 VERSN REVDAT 2 22-JUN-04 1T2X 1 REMARK REVDAT 1 18-MAY-04 1T2X 0
JRNL AUTH D.WILKINSON,N.AKUMANYI,R.HURTADO-GUERRERO,H.DAWKES, JRNL AUTH 2 P.F.KNOWLES,S.E.V.PHILLIPS,M.J.MCPHERSON JRNL TITL STRUCTURAL AND KINETIC STUDIES OF A SERIES OF JRNL TITL 2 MUTANTS OF GALACTOSE OXIDASE IDENTIFIED BY JRNL TITL 3 DIRECTED EVOLUTION. JRNL REF PROTEIN ENG.DES.SEL. V. 17 141 2004 JRNL REFN ISSN 1741-0126 JRNL PMID 15047910 JRNL DOI 10.1093/PROTEIN/GZH018
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 28708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.67 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2553 REMARK 3 BIN FREE R VALUE : 0.2697 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 242 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4829 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.95 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.67 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.49 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1T2X COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022244.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1GOG REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG 4000, REMARK 280 CALCIUM ACETATE, PH 6.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 280K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.68800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.49750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.68800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.49750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 228 CE1 TYR A 272 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 639 C GLN A 639 O 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 3 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO A 4 CA - N - CD ANGL. DEV. = -9.3 DEGREES REMARK 500 PRO A 4 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO A 4 C - N - CA ANGL. DEV. = 52.7 DEGREES REMARK 500 PRO A 4 C - N - CD ANGL. DEV. = -43.0 DEGREES REMARK 500 LEU A 68 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 GLN A 639 CA - C - O ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 -136.13 -19.58 REMARK 500 PRO A 4 41.03 75.31 REMARK 500 ILE A 5 0.12 31.16 REMARK 500 LYS A 60 -33.31 65.40 REMARK 500 ASN A 79 95.76 -58.23 REMARK 500 ASN A 95 64.57 -162.71 REMARK 500 SER A 187 -96.07 -107.23 REMARK 500 SER A 188 -144.46 -157.61 REMARK 500 MET A 226 20.14 -74.35 REMARK 500 ALA A 323 37.51 -95.62 REMARK 500 HIS A 334 53.72 39.45 REMARK 500 SER A 432 -122.73 55.33 REMARK 500 ASP A 466 33.20 -86.35 REMARK 500 VAL A 494 -131.88 -111.08 REMARK 500 LEU A 514 71.18 66.32 REMARK 500 PHE A 523 47.05 -81.48 REMARK 500 THR A 582 -3.45 80.32 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 640 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 29 O REMARK 620 2 ASN A 34 O 166.9 REMARK 620 3 ASP A 32 OD1 82.8 84.4 REMARK 620 4 THR A 37 O 101.3 90.4 139.4 REMARK 620 5 THR A 37 OG1 91.8 86.8 70.7 68.8 REMARK 620 6 ALA A 141 O 84.2 103.7 139.4 80.9 148.1 REMARK 620 7 GLU A 142 OE2 99.2 74.0 72.8 143.6 140.1 71.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 641 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 581 NE2 REMARK 620 2 HIS A 496 NE2 101.5 REMARK 620 3 TYR A 272 OH 105.7 152.8 REMARK 620 4 TYR A 495 OH 99.5 106.8 69.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 640 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 641 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 642 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 643 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 644
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOG RELATED DB: PDB REMARK 900 NOVEL THIOETHER BOND REVEALED BY A 1.7 A CRYSTAL STRUCTURE REMARK 900 OF GALACTOSE OXIDASE. REMARK 900 RELATED ID: 1K3I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PRECURSOR OF GALACTOSE OXIDASE
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISSPROT ENTRY Q01745 HAS THE SOURCE DACTYLIUM REMARK 999 DENDROIDES. THE SOURCE FOR THIS ENTRY IS FUSARIUM SP. REMARK 999 THE AUTHORS STATE: THE ORIGINAL PAPERS REFER TO THE REMARK 999 SOURCE AS DACYLIUM DENDROIDES BUT THIS WAS SHOWN TO REMARK 999 WRONG. HERE IS THE REFERENCE: OGEL, Z.B., BRAYFORD, D. REMARK 999 AND MCPHERSON, M.J., CELLULOSE-TRIGGERED SPORULATION REMARK 999 IN THE GALACTOSE OXIDASE PRODUCING FUNGUS REMARK 999 CLADYBOTRYUM (DACTYLIUM) DENDROIDES NRRL 2903 REMARK 999 AND ITS RE-IDENTIFICATION AS A SPECIES OF FUSARIUM, REMARK 999 MYCOLOGICAL RESEARCH, 98, 474-480, 1994.
DBREF 1T2X A 1 639 PDB 1T2X 1T2X 1 639
SEQRES 1 A 639 ALA SER ALA PRO ILE GLY SER ALA ILE SER ARG ASN ASN SEQRES 2 A 639 TRP ALA VAL THR CYS ASP SER ALA GLN SER GLY ASN GLU SEQRES 3 A 639 CYS ASN LYS ALA ILE ASP GLY ASN LYS ASP THR PHE TRP SEQRES 4 A 639 HIS THR PHE TYR GLY ALA ASN GLY ASP PRO LYS PRO PRO SEQRES 5 A 639 HIS THR TYR THR ILE ASP MET LYS THR THR GLN ASN VAL SEQRES 6 A 639 ASN GLY LEU SER MET LEU PRO ARG GLN ASP GLY ASN GLN SEQRES 7 A 639 ASN GLY TRP ILE GLY ARG HIS GLU VAL TYR LEU SER SER SEQRES 8 A 639 ASP GLY THR ASN TRP GLY SER PRO VAL ALA SER GLY SER SEQRES 9 A 639 TRP PHE ALA ASP SER THR THR LYS TYR SER ASN PHE GLU SEQRES 10 A 639 THR ARG PRO ALA ARG TYR VAL ARG LEU VAL ALA ILE THR SEQRES 11 A 639 GLU ALA ASN GLY GLN PRO TRP THR SER ILE ALA GLU ILE SEQRES 12 A 639 ASN VAL PHE GLN ALA SER SER TYR THR ALA PRO GLN PRO SEQRES 13 A 639 GLY LEU GLY ARG TRP GLY PRO THR ILE ASP LEU PRO ILE SEQRES 14 A 639 VAL PRO ALA ALA ALA ALA ILE GLU PRO THR SER GLY ARG SEQRES 15 A 639 VAL LEU MET TRP SER SER TYR ARG ASN ASP ALA PHE GLY SEQRES 16 A 639 GLY SER PRO GLY GLY ILE THR LEU THR SER SER TRP ASP SEQRES 17 A 639 PRO SER THR GLY ILE VAL SER ASP ARG THR VAL THR VAL SEQRES 18 A 639 THR LYS HIS ASP MET PHE CYS PRO GLY ILE SER MET ASP SEQRES 19 A 639 GLY ASN GLY GLN ILE VAL VAL THR GLY GLY ASN ASP ALA SEQRES 20 A 639 LYS LYS THR SER LEU TYR ASP SER SER SER ASP SER TRP SEQRES 21 A 639 ILE PRO GLY PRO ASP MET GLN VAL ALA ARG GLY TYR GLN SEQRES 22 A 639 SER SER ALA THR MET SER ASP GLY ARG VAL PHE THR ILE SEQRES 23 A 639 GLY GLY SER TRP SER GLY GLY VAL PHE GLU LYS ASN GLY SEQRES 24 A 639 GLU VAL TYR SER PRO SER SER LYS THR TRP THR SER LEU SEQRES 25 A 639 PRO ASN ALA LYS VAL ASN PRO MET LEU THR ALA ASP LYS SEQRES 26 A 639 GLN GLY LEU TYR ARG SER ASP ASN HIS ALA TRP LEU PHE SEQRES 27 A 639 GLY TRP LYS LYS GLY SER VAL PHE GLN ALA GLY PRO SER SEQRES 28 A 639 THR ALA MET ASN TRP TYR TYR THR SER GLY SER GLY ASP SEQRES 29 A 639 VAL LYS SER ALA GLY LYS ARG GLN SER ASN ARG GLY VAL SEQRES 30 A 639 ALA PRO ASP ALA MET SER GLY ASN ALA VAL MET TYR ASP SEQRES 31 A 639 ALA VAL LYS GLY LYS ILE LEU THR PHE GLY GLY SER PRO SEQRES 32 A 639 ASP TYR GLN ASP SER ASP ALA THR THR ASN ALA HIS ILE SEQRES 33 A 639 ILE THR LEU GLY GLU PRO GLY THR SER PRO ASN THR VAL SEQRES 34 A 639 PHE ALA SER ASN GLY LEU TYR PHE ALA ARG THR PHE HIS SEQRES 35 A 639 THR SER VAL VAL LEU PRO ASP GLY SER THR PHE ILE THR SEQRES 36 A 639 GLY GLY GLN ARG ARG GLY ILE PRO PHE GLU ASP SER THR SEQRES 37 A 639 PRO VAL PHE THR PRO GLU ILE TYR VAL PRO GLU GLN ASP SEQRES 38 A 639 THR PHE TYR LYS GLN ASN PRO ASN SER ILE VAL ARG VAL SEQRES 39 A 639 TYR HIS SER ILE SER LEU LEU LEU PRO ASP GLY ARG VAL SEQRES 40 A 639 PHE ASN GLY GLY GLY GLY LEU CYS GLY ASP CYS THR THR SEQRES 41 A 639 ASN HIS PHE ASP ALA GLN ILE PHE THR PRO ASN TYR LEU SEQRES 42 A 639 TYR ASN SER ASN GLY ASN LEU ALA THR ARG PRO LYS ILE SEQRES 43 A 639 THR ARG THR SER THR GLN SER VAL LYS VAL GLY GLY ARG SEQRES 44 A 639 ILE THR ILE SER THR ASP SER SER ILE SER LYS ALA SER SEQRES 45 A 639 LEU ILE ARG TYR GLY THR ALA THR HIS THR VAL ASN THR SEQRES 46 A 639 ASP GLN ARG ARG ILE PRO LEU THR LEU THR ASN ASN GLY SEQRES 47 A 639 GLY ASN SER TYR SER PHE GLN VAL PRO SER ASP SER GLY SEQRES 48 A 639 VAL ALA LEU PRO GLY TYR TRP MET LEU PHE VAL MET ASN SEQRES 49 A 639 SER ALA GLY VAL PRO SER VAL ALA SER THR ILE ARG VAL SEQRES 50 A 639 THR GLN
HET NA A 640 1 HET CU A 641 1 HET ACT A 642 4 HET ACT A 643 4 HET ACT A 644 4
HETNAM NA SODIUM ION HETNAM CU COPPER (II) ION HETNAM ACT ACETATE ION
FORMUL 2 NA NA 1+ FORMUL 3 CU CU 2+ FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 HOH *313(H2 O)
HELIX 1 1 GLU A 26 ILE A 31 5 6 HELIX 2 2 VAL A 317 LEU A 321 5 5 HELIX 3 3 GLY A 327 ASP A 332 1 6 HELIX 4 4 LYS A 341 GLY A 343 5 3 HELIX 5 5 PRO A 530 TYR A 534 5 5
SHEET 1 A 4 SER A 7 ALA A 8 0 SHEET 2 A 4 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 A 4 HIS A 53 LEU A 71 -1 N LEU A 71 O GLU A 142 SHEET 4 A 4 ALA A 15 CYS A 18 -1 N THR A 17 O THR A 56 SHEET 1 B10 SER A 7 ALA A 8 0 SHEET 2 B10 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 B10 HIS A 53 LEU A 71 -1 N LEU A 71 O GLU A 142 SHEET 4 B10 LYS A 112 ALA A 128 -1 O ALA A 128 N HIS A 53 SHEET 5 B10 ARG A 84 SER A 90 -1 N GLU A 86 O VAL A 127 SHEET 6 B10 ALA A 101 SER A 104 -1 O ALA A 101 N VAL A 87 SHEET 7 B10 ARG A 160 ASP A 166 1 O ASP A 166 N SER A 104 SHEET 8 B10 ASP A 524 THR A 529 -1 O ALA A 525 N ILE A 165 SHEET 9 B10 VAL A 507 GLY A 511 -1 N ASN A 509 O GLN A 526 SHEET 10 B10 SER A 497 LEU A 501 -1 N ILE A 498 O GLY A 510 SHEET 1 C 2 TRP A 39 HIS A 40 0 SHEET 2 C 2 SER A 139 ILE A 140 -1 O ILE A 140 N TRP A 39 SHEET 1 D 5 VAL A 214 VAL A 219 0 SHEET 2 D 5 THR A 202 TRP A 207 -1 N THR A 202 O VAL A 219 SHEET 3 D 5 VAL A 183 TRP A 186 -1 N MET A 185 O SER A 205 SHEET 4 D 5 ALA A 173 ILE A 176 -1 N ALA A 175 O LEU A 184 SHEET 5 D 5 THR A 578 THR A 580 -1 O ALA A 579 N ALA A 174 SHEET 1 E 4 GLY A 230 MET A 233 0 SHEET 2 E 4 GLN A 238 THR A 242 -1 O VAL A 240 N SER A 232 SHEET 3 E 4 THR A 250 ASP A 254 -1 O SER A 251 N VAL A 241 SHEET 4 E 4 SER A 259 PRO A 262 -1 O SER A 259 N ASP A 254 SHEET 1 F 4 SER A 274 THR A 277 0 SHEET 2 F 4 VAL A 283 ILE A 286 -1 O PHE A 284 N ALA A 276 SHEET 3 F 4 GLY A 299 SER A 303 -1 O TYR A 302 N VAL A 283 SHEET 4 F 4 THR A 308 LEU A 312 -1 O LEU A 312 N GLY A 299 SHEET 1 G 4 LEU A 337 GLY A 339 0 SHEET 2 G 4 VAL A 345 GLN A 347 -1 O PHE A 346 N PHE A 338 SHEET 3 G 4 ALA A 353 TYR A 358 -1 O ASN A 355 N GLN A 347 SHEET 4 G 4 ASP A 364 LYS A 370 -1 O LYS A 366 N TRP A 356 SHEET 1 H 2 GLN A 372 SER A 373 0 SHEET 2 H 2 GLY A 376 VAL A 377 -1 O GLY A 376 N SER A 373 SHEET 1 I 4 ASN A 385 ASP A 390 0 SHEET 2 I 4 LYS A 395 PHE A 399 -1 O LEU A 397 N VAL A 387 SHEET 3 I 4 ALA A 414 THR A 418 -1 O ILE A 417 N ILE A 396 SHEET 4 I 4 ASN A 427 PHE A 430 -1 O ASN A 427 N THR A 418 SHEET 1 J 2 SER A 408 ASP A 409 0 SHEET 2 J 2 ARG A 460 GLY A 461 -1 O GLY A 461 N SER A 408 SHEET 1 K 4 THR A 443 VAL A 446 0 SHEET 2 K 4 THR A 452 THR A 455 -1 O THR A 455 N THR A 443 SHEET 3 K 4 GLU A 474 VAL A 477 -1 O GLU A 474 N ILE A 454 SHEET 4 K 4 THR A 482 LYS A 485 -1 O THR A 482 N VAL A 477 SHEET 1 L 4 ILE A 546 THR A 549 0 SHEET 2 L 4 ARG A 559 THR A 564 -1 O SER A 563 N ARG A 548 SHEET 3 L 4 SER A 601 GLN A 605 -1 O TYR A 602 N ILE A 562 SHEET 4 L 4 THR A 595 ASN A 596 -1 N THR A 595 O SER A 603 SHEET 1 M 5 SER A 553 LYS A 555 0 SHEET 2 M 5 SER A 633 THR A 638 1 O ARG A 636 N VAL A 554 SHEET 3 M 5 GLY A 616 MET A 623 -1 N TRP A 618 O ILE A 635 SHEET 4 M 5 LYS A 570 ARG A 575 -1 N LYS A 570 O MET A 623 SHEET 5 M 5 ARG A 589 PRO A 591 -1 O ILE A 590 N LEU A 573
SSBOND 1 CYS A 18 CYS A 27 1555 1555 2.03 SSBOND 2 CYS A 515 CYS A 518 1555 1555 2.03
LINK NA NA A 640 O LYS A 29 1555 1555 2.54 LINK NA NA A 640 O ASN A 34 1555 1555 2.58 LINK CU CU A 641 NE2 HIS A 581 1555 1555 2.13 LINK CU CU A 641 NE2 HIS A 496 1555 1555 1.98 LINK CU CU A 641 OH TYR A 272 1555 1555 2.00 LINK CU CU A 641 OH TYR A 495 1555 1555 2.73 LINK OD1 ASP A 32 NA NA A 640 1555 1555 2.82 LINK O THR A 37 NA NA A 640 1555 1555 2.87 LINK OG1 THR A 37 NA NA A 640 1555 1555 2.92 LINK O ALA A 141 NA NA A 640 1555 1555 2.67 LINK OE2 GLU A 142 NA NA A 640 1555 1555 2.85
CISPEP 1 PRO A 51 PRO A 52 0 0.61 CISPEP 2 GLY A 162 PRO A 163 0 0.23 CISPEP 3 GLY A 349 PRO A 350 0 -0.05
SITE 1 AC1 6 LYS A 29 ASP A 32 ASN A 34 THR A 37 SITE 2 AC1 6 ALA A 141 GLU A 142 SITE 1 AC2 6 PHE A 227 CYS A 228 TYR A 272 TYR A 495 SITE 2 AC2 6 HIS A 496 HIS A 581 SITE 1 AC3 7 ARG A 371 ALA A 378 ALA A 381 THR A 398 SITE 2 AC3 7 GLY A 400 ASN A 413 HIS A 415 SITE 1 AC4 5 TYR A 272 GLN A 326 ARG A 330 TYR A 495 SITE 2 AC4 5 HOH A 956 SITE 1 AC5 3 GLN A 605 SER A 608 HOH A 727
CRYST1 97.376 88.995 85.800 90.00 117.49 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010269 0.000000 0.005344 0.00000
SCALE2 0.000000 0.011237 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013138 0.00000