10 20 30 40 50 60 70 80 1T2M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 22-APR-04 1T2M
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AF-6
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AF-6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B(+)
KEYWDS CHROMOSOMAL TRANSLOCATION, PROTO-ONCOGENE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.ZHOU,J.H.WU,Y.Q.XU,A.D.HUANG,Y.Y.SHI
REVDAT 3 24-FEB-09 1T2M 1 VERSN REVDAT 2 19-APR-05 1T2M 1 JRNL REVDAT 1 08-FEB-05 1T2M 0
JRNL AUTH H.ZHOU,Y.XU,Y.YANG,A.HUANG,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF AF-6 PDZ DOMAIN AND ITS JRNL TITL 2 INTERACTION WITH THE C-TERMINAL PEPTIDES FROM JRNL TITL 3 NEUREXIN AND BCR JRNL REF J.BIOL.CHEM. V. 280 13841 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15684424 JRNL DOI 10.1074/JBC.M411065200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS ALSO REFINED WITH REMARK 3 CSI VERSION 1.0 (AUTHORS: DAVID S. WISHART)
REMARK 4 REMARK 4 1T2M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022233.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE, 1MM EDTA REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER NA; 1MM REMARK 210 EDTA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, CNS 1.1, MOLMOL REMARK 210 2K.2, SPARKY 3 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 94 REMARK 465 GLU A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 15 47.08 -163.40 REMARK 500 1 LYS A 31 -158.81 -122.10 REMARK 500 1 ARG A 50 -67.82 -106.26 REMARK 500 1 LEU A 58 -62.71 -109.07 REMARK 500 1 LEU A 65 51.19 -96.86 REMARK 500 2 PRO A 4 -166.20 -69.86 REMARK 500 2 ASN A 15 32.26 -152.87 REMARK 500 2 LYS A 31 -147.44 -123.66 REMARK 500 2 LEU A 58 -63.12 -108.25 REMARK 500 2 ARG A 79 56.81 -95.35 REMARK 500 2 GLN A 91 -165.78 -101.28 REMARK 500 3 LYS A 2 96.58 64.00 REMARK 500 3 GLU A 3 78.82 59.11 REMARK 500 3 GLN A 14 56.80 -92.82 REMARK 500 3 MET A 17 -68.34 -138.71 REMARK 500 3 LYS A 31 -155.43 -121.47 REMARK 500 3 ARG A 79 44.30 -92.71 REMARK 500 3 LYS A 90 87.95 -66.45 REMARK 500 3 GLN A 91 -168.16 -110.55 REMARK 500 4 LYS A 2 75.42 64.27 REMARK 500 4 GLU A 3 146.29 68.45 REMARK 500 4 GLN A 14 68.69 -101.04 REMARK 500 4 ARG A 79 65.10 -101.72 REMARK 500 4 LYS A 90 83.57 -66.83 REMARK 500 4 GLN A 91 -168.49 -108.02 REMARK 500 5 GLU A 3 98.05 61.94 REMARK 500 5 PRO A 4 -178.19 -59.93 REMARK 500 5 MET A 17 -59.11 -127.32 REMARK 500 5 LYS A 31 -151.54 -124.01 REMARK 500 5 LYS A 90 83.97 -66.20 REMARK 500 6 GLN A 14 73.16 -115.06 REMARK 500 6 MET A 17 -65.21 -100.72 REMARK 500 6 LEU A 58 -54.76 -145.18 REMARK 500 6 LYS A 90 91.56 -66.28 REMARK 500 6 GLN A 91 -165.87 -113.07 REMARK 500 7 ASN A 15 42.54 -160.32 REMARK 500 7 ASP A 30 37.26 -95.22 REMARK 500 7 LYS A 31 -148.50 -140.21 REMARK 500 7 LYS A 41 109.01 -59.58 REMARK 500 7 ARG A 50 -51.39 -144.10 REMARK 500 7 LEU A 58 -63.63 -95.18 REMARK 500 7 ARG A 79 58.02 -91.21 REMARK 500 8 ASN A 15 38.57 -164.91 REMARK 500 8 MET A 17 -66.47 -129.60 REMARK 500 8 LYS A 31 -154.38 -120.99 REMARK 500 8 ARG A 50 -51.03 -120.57 REMARK 500 8 VAL A 66 87.07 -67.58 REMARK 500 8 ARG A 79 49.18 -89.17 REMARK 500 8 GLN A 91 -169.90 -161.30 REMARK 500 9 ASN A 15 42.54 -166.21 REMARK 500 9 GLN A 29 -165.80 -122.65 REMARK 500 9 ASP A 30 20.39 -169.84 REMARK 500 9 LEU A 58 -64.02 -90.35 REMARK 500 9 ARG A 79 57.65 -90.90 REMARK 500 9 SER A 81 -167.20 -108.43 REMARK 500 10 LYS A 13 94.01 -69.09 REMARK 500 10 MET A 17 -73.02 -87.27 REMARK 500 10 GLN A 29 -163.01 -117.68 REMARK 500 10 ASP A 30 20.64 -170.29 REMARK 500 10 ARG A 50 -67.13 -146.27 REMARK 500 10 ALA A 52 -162.20 -129.81 REMARK 500 10 SER A 81 -169.76 -102.00 REMARK 500 11 PRO A 4 170.61 -58.00 REMARK 500 11 ASN A 15 42.66 -154.13 REMARK 500 11 ALA A 44 -62.20 -100.08 REMARK 500 11 ARG A 79 59.96 -93.77 REMARK 500 11 SER A 81 -169.17 -71.99 REMARK 500 11 GLN A 91 -159.41 -155.54 REMARK 500 12 ASN A 15 43.19 -161.39 REMARK 500 12 ASP A 30 30.80 -95.15 REMARK 500 12 LYS A 31 -148.20 -130.96 REMARK 500 12 ARG A 50 31.89 -142.79 REMARK 500 12 ARG A 79 40.33 -93.44 REMARK 500 12 SER A 81 -165.02 -103.57 REMARK 500 12 GLN A 91 -159.28 -148.01 REMARK 500 13 GLU A 3 114.19 67.29 REMARK 500 13 PRO A 4 176.35 -55.70 REMARK 500 13 ASN A 15 43.21 -161.73 REMARK 500 13 LYS A 31 -158.51 -118.06 REMARK 500 13 VAL A 60 -167.61 -102.90 REMARK 500 13 ASP A 61 68.81 -67.22 REMARK 500 13 LEU A 65 68.60 -102.02 REMARK 500 14 LEU A 58 -61.38 -95.64 REMARK 500 14 ARG A 79 49.67 -87.10 REMARK 500 14 SER A 81 -168.10 -101.87 REMARK 500 14 GLN A 91 -165.80 -161.19 REMARK 500 15 LYS A 2 29.85 -158.62 REMARK 500 15 LYS A 13 103.76 -56.25 REMARK 500 15 ASN A 15 38.81 -149.54 REMARK 500 15 LYS A 31 -149.58 -124.21 REMARK 500 15 LEU A 58 -60.56 -105.99 REMARK 500 15 ARG A 79 49.54 -89.79 REMARK 500 15 GLN A 91 -167.01 -163.12 REMARK 500 16 LYS A 2 52.90 -90.14 REMARK 500 16 GLN A 14 66.10 -102.59 REMARK 500 16 MET A 17 -72.99 -147.61 REMARK 500 16 GLN A 29 -164.65 -123.94 REMARK 500 16 ASP A 30 21.24 -173.39 REMARK 500 16 LEU A 58 -59.59 -120.80 REMARK 500 16 ARG A 79 59.03 -90.68 REMARK 500 16 SER A 81 -165.69 -79.40 REMARK 500 17 LYS A 2 136.45 69.08 REMARK 500 17 PRO A 4 170.36 -55.83 REMARK 500 17 MET A 17 -73.48 -112.31 REMARK 500 17 GLN A 29 -159.80 -133.49 REMARK 500 17 ASP A 30 31.68 -173.78 REMARK 500 17 LEU A 58 -61.40 -108.47 REMARK 500 17 LEU A 65 76.89 -100.74 REMARK 500 17 ARG A 79 48.24 -91.52 REMARK 500 17 GLN A 91 -166.77 -160.96 REMARK 500 18 ASN A 15 44.12 -160.39 REMARK 500 18 LYS A 31 -157.77 -120.29 REMARK 500 18 ARG A 50 -50.90 -123.37 REMARK 500 18 ARG A 79 46.04 -88.81 REMARK 500 19 LYS A 2 156.85 67.08 REMARK 500 19 ASN A 15 37.40 -158.01 REMARK 500 19 GLN A 29 -163.11 -118.81 REMARK 500 19 ASP A 30 18.71 -168.13 REMARK 500 19 LYS A 41 91.08 -68.28 REMARK 500 19 ARG A 50 -50.62 -143.18 REMARK 500 19 LEU A 58 -55.93 -120.41 REMARK 500 19 ARG A 79 51.68 -91.19 REMARK 500 19 SER A 81 -165.50 -110.58 REMARK 500 20 GLU A 3 102.22 64.66 REMARK 500 20 ASN A 15 36.30 -154.46 REMARK 500 20 ARG A 50 -49.58 -133.88 REMARK 500 20 ALA A 52 -169.47 -126.73 REMARK 500 20 LEU A 58 -58.49 -121.05 REMARK 500 20 GLU A 75 -39.93 -37.88 REMARK 500 20 ARG A 79 31.93 -90.85 REMARK 500 20 SER A 81 -160.68 -129.35 REMARK 500 20 GLN A 91 -165.71 -124.55 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1T2M A 2 93 UNP P55196 AFAD_HUMAN 987 1077
SEQADV 1T2M MET A 1 UNP P55196 INITIATING METHIONINE SEQADV 1T2M LEU A 94 UNP P55196 EXPRESSION TAG SEQADV 1T2M GLU A 95 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 96 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 97 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 98 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 99 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 100 UNP P55196 EXPRESSION TAG SEQADV 1T2M HIS A 101 UNP P55196 EXPRESSION TAG
SEQRES 1 A 101 MET LYS GLU PRO GLU ILE ILE THR VAL THR LEU LYS LYS SEQRES 2 A 101 GLN ASN GLY MET GLY LEU SER ILE VAL ALA ALA LYS GLY SEQRES 3 A 101 ALA GLY GLN ASP LYS LEU GLY ILE TYR VAL LYS SER VAL SEQRES 4 A 101 VAL LYS GLY GLY ALA ALA ASP VAL ASP GLY ARG LEU ALA SEQRES 5 A 101 ALA GLY ASP GLN LEU LEU SER VAL ASP GLY ARG SER LEU SEQRES 6 A 101 VAL GLY LEU SER GLN GLU ARG ALA ALA GLU LEU MET THR SEQRES 7 A 101 ARG THR SER SER VAL VAL THR LEU GLU VAL ALA LYS GLN SEQRES 8 A 101 GLY ALA LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 SER A 69 ARG A 79 1 11
SHEET 1 A 5 GLU A 5 LYS A 12 0 SHEET 2 A 5 VAL A 83 LYS A 90 -1 O VAL A 84 N LEU A 11 SHEET 3 A 5 ASP A 55 VAL A 60 -1 N GLN A 56 O ALA A 89 SHEET 4 A 5 GLY A 33 VAL A 39 -1 N VAL A 36 O ASP A 55 SHEET 5 A 5 LEU A 19 ALA A 24 -1 N VAL A 22 O TYR A 35 SHEET 1 B 4 GLU A 5 LYS A 12 0 SHEET 2 B 4 VAL A 83 LYS A 90 -1 O VAL A 84 N LEU A 11 SHEET 3 B 4 ASP A 55 VAL A 60 -1 N GLN A 56 O ALA A 89 SHEET 4 B 4 ARG A 63 SER A 64 -1 O ARG A 63 N VAL A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000