10 20 30 40 50 60 70 80 1T1M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBOSOME 16-APR-04 1T1M
TITLE BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE TITLE 2 E. COLI 70S RIBOSOME
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DODECAMER FRAGMENT OF DOUBLE HELIX FROM 23S RRNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APICAL LOOP OF HELIX 43; COMPND 5 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S COMPND 6 RIBOSOME; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 42-MER FRAGMENT OF DOUBLE HELIX FROM 16S RRNA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TOP PORTION OF HELIX 44; COMPND 11 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S COMPND 12 RIBOSOME; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RIBOSOME RECYCLING FACTOR; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: RIBOSOME RELEASING FACTOR; RRF; COMPND 17 OTHER_DETAILS: FITTED INTO THE CRYO-EM MAP OF THE 70S COMPND 18 RIBOSOME
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MRE600; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: MRE600; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 STRAIN: MRE600; SOURCE 13 OTHER_DETAILS: SEQUENCE TAKEN FROM THERMOTOGA MARITIMA
KEYWDS RRF BINDING POSITION ON THE RIBOSOME
EXPDTA ELECTRON MICROSCOPY
MDLTYP CA ATOMS ONLY, CHAIN C; P ATOMS ONLY, CHAIN A, B
AUTHOR R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA,T.M.BOOTH, AUTHOR 2 C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK
REVDAT 2 24-FEB-09 1T1M 1 VERSN REVDAT 1 15-JUN-04 1T1M 0
JRNL AUTH R.K.AGRAWAL,M.R.SHARMA,M.C.KIEL,G.HIROKAWA, JRNL AUTH 2 T.M.BOOTH,C.M.SPAHN,R.A.GRASSUCCI,A.KAJI,J.FRANK JRNL TITL VISUALIZATION OF RIBOSOME-RECYCLING FACTOR ON THE JRNL TITL 2 ESCHERICHIA COLI 70S RIBOSOME: FUNCTIONAL JRNL TITL 3 IMPLICATIONS JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8900 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15178758 JRNL DOI 10.1073/PNAS.0401904101
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.HARMS,F.SCHLUENZEN,R.ZARIVACH,A.BASHAN,S.GAT, REMARK 1 AUTH 2 I.AGMON,H.BARTELS,F.FRANCESCHI,A.YONATH REMARK 1 TITL HIGH RESOLUTION STRUCTURE OF THE LARGE RIBOSOMAL REMARK 1 TITL 2 SUBUNIT FROM A MESOPHILIC EUBACTERIUM REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 107 679 2001 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 11733066 REMARK 1 DOI 10.1016/S0092-8674(01)00546-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.T.WIMBERLY,D.E.BRODERSEN,W.M.CLEMONS JR., REMARK 1 AUTH 2 R.J.MORGAN-WARREN,A.P.CARTER,C.VONRHEIN,T.HARTSCH, REMARK 1 AUTH 3 V.RAMAKRISHNAN REMARK 1 TITL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT REMARK 1 REF NATURE V. 407 327 2000 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 11014182 REMARK 1 DOI 10.1038/35030006 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.SELMER,S.AL-KARADAGHI,G.HIROKAWA,A.KAJI,A.LILJAS REMARK 1 TITL CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME REMARK 1 TITL 2 RECYCLING FACTOR: A TRNA MIMIC REMARK 1 REF SCIENCE V. 286 2349 1999 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.K.KIM,K.MIN,S.W.SUH REMARK 1 TITL CRYSTAL STRUCTURE OF THE RIBOSOME RECYCLING FACTOR REMARK 1 TITL 2 FROM ESCHERICHIA COLI REMARK 1 REF EMBO J. V. 19 2362 2000 REMARK 1 REFN ISSN 0261-4189
REMARK 2 REMARK 2 RESOLUTION. 12.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : 3D PROJECTION MATCHING; CONJUGATE REMARK 3 GRADIENTS WITH REGULARIZATION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1KC9, 1JFJ, 1DD5 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : CROSS CORELATION COEFFICIENT BASED MANUAL REMARK 3 FITTING IN O REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 2.820 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 12.000 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : CTF CORRECTION OF 3D-MAPS REMARK 3 BY WIENER FILTRATION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: SPIDER PACKAGE
REMARK 4 REMARK 4 1T1M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022198.
REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : ASYMMETRIC REMARK 245 NAME OF SAMPLE : 70S-RRF COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 32.00 REMARK 245 SAMPLE SUPPORT DETAILS : QUANTIFOIL HOLLEY-CARBON REMARK 245 FILM GRIDS REMARK 245 SAMPLE VITRIFICATION DETAILS : RAPID-FREEZING IN LIQUID REMARK 245 ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JUN-02 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 93.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49696 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL
REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 0
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KC9 RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 50S RIBOSOMAL REMARK 900 SUBUNIT FROM D. RADIODURANS REMARK 900 RELATED ID: 1FJF RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE 30S RIBOSOMAL REMARK 900 SUBUNIT FROM T. THERMOPHILUS REMARK 900 RELATED ID: 1DD5 RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF RRF FROM THERMOTOGA REMARK 900 MARITIMA REMARK 900 RELATED ID: 1EK8 RELATED DB: PDB REMARK 900 X-RAY CRYSTALLOGRAPHIC STRUCTURE OF RRF FROM E. COLI REMARK 900 RELATED ID: 1T1O RELATED DB: PDB REMARK 900 RELATED ID: EMD-1077 RELATED DB: EMDB
DBREF 1T1M C 0 184 UNP P84154 P84154_ECOLI 1 185 DBREF 1T1M A 1061 1072 PDB 1T1M 1T1M 1061 1072 DBREF 1T1M B 1401 1501 PDB 1T1M 1T1M 1401 1501
SEQRES 1 A 12 U G G C U U A G A A G C SEQRES 1 B 42 G C C C G U C A C A C C A SEQRES 2 B 42 U G G G A G U A U G A C U SEQRES 3 B 42 G G G G U G A A G U C G U SEQRES 4 B 42 A A C SEQRES 1 C 185 MET VAL ASN PRO PHE ILE LYS GLU ALA LYS GLU LYS MET SEQRES 2 C 185 LYS ARG THR LEU GLU LYS ILE GLU ASP GLU LEU ARG LYS SEQRES 3 C 185 MET ARG THR GLY LYS PRO SER PRO ALA ILE LEU GLU GLU SEQRES 4 C 185 ILE LYS VAL ASP TYR TYR GLY VAL PRO THR PRO VAL ASN SEQRES 5 C 185 GLN LEU ALA THR ILE SER ILE SER GLU GLU ARG THR LEU SEQRES 6 C 185 VAL ILE LYS PRO TRP ASP LYS SER VAL LEU SER LEU ILE SEQRES 7 C 185 GLU LYS ALA ILE ASN ALA SER ASP LEU GLY LEU ASN PRO SEQRES 8 C 185 ILE ASN ASP GLY ASN VAL ILE ARG LEU VAL PHE PRO SER SEQRES 9 C 185 PRO THR THR GLU GLN ARG GLU LYS TRP VAL LYS LYS ALA SEQRES 10 C 185 LYS GLU ILE VAL GLU GLU GLY LYS ILE ALA ILE ARG ASN SEQRES 11 C 185 ILE ARG ARG GLU ILE LEU LYS LYS ILE LYS GLU ASP GLN SEQRES 12 C 185 LYS GLU GLY LEU ILE PRO GLU ASP ASP ALA LYS ARG LEU SEQRES 13 C 185 GLU ASN GLU ILE GLN LYS LEU THR ASP GLU PHE ILE GLU SEQRES 14 C 185 LYS LEU ASP GLU VAL PHE GLU ILE LYS LYS GLU GLU ILE SEQRES 15 C 185 MET GLU PHE
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000