10 20 30 40 50 60 70 80 1T1H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 16-APR-04 1T1H
TITLE NMR SOLUTION STRUCTURE OF THE U BOX DOMAIN FROM ATPUB14, AN TITLE 2 ARMADILLO REPEAT CONTAINING PROTEIN FROM ARABIDOPSIS TITLE 3 THALIANA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARMADILLO REPEAT CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: U-BOX DOMAIN (249-321); COMPND 5 SYNONYM: GSPEF-ATPUB14; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1
KEYWDS UBIQUITIN LIGASE, E3 LIGASE, ARABIDOPSIS, U-BOX, NMR
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.ANDERSEN,B.B.KRAGELUND,A.N.OLSEN,F.H.LARSEN,N.-H.CHUA, AUTHOR 2 F.M.POULSEN,K.SKRIVER
REVDAT 3 24-FEB-09 1T1H 1 VERSN REVDAT 2 28-SEP-04 1T1H 1 JRNL REVDAT 1 03-AUG-04 1T1H 0
JRNL AUTH P.ANDERSEN,B.B.KRAGELUND,A.N.OLSEN,F.H.LARSEN, JRNL AUTH 2 N.-H.CHUA,F.M.POULSEN,K.SKRIVER JRNL TITL STRUCTURE AND BIOCHEMICAL FUNCTION OF A JRNL TITL 2 PROTOTYPICAL ARABIDOPSIS U-BOX DOMAIN JRNL REF J.BIOL.CHEM. V. 279 40053 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15231834 JRNL DOI 10.1074/JBC.M405057200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1083 NOE-DERIVED DISTANCE CONSTRAINTS AND 88 DIHEDRAL ANGLE REMARK 3 CONTRAINTS
REMARK 4 REMARK 4 1T1H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022193.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE, 0.15M REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM GSPEF-ATPUB14(249-321) REMARK 210 U-15N,13C, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.15 M NACL, 1 MM REMARK 210 DTT, 10% D20; 0.6 MM GSPEF- REMARK 210 ATPUB14(249-321) U-15N,13C, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.15 M REMARK 210 NACL, 1 MM DTT, 10% D20; 0.6 REMARK 210 MM GSPEF-ATPUB14(249-321) U- REMARK 210 15N, 20 MM SODIUM PHOSPHATE, REMARK 210 0.15 M NACL, 1 MM DTT, 10% REMARK 210 D20; 0.4 MM GSPEF-ATPUB14(249- REMARK 210 321) U-15N,13C, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.15 M NACL, 1 MM REMARK 210 DTT, 99.96% D20; 0.5 MM GSPEF- REMARK 210 ATPUB14(249-321) U-15N,13C, 20 REMARK 210 MM SODIUM PHOSPHATE, 0.15 M REMARK 210 NACL, 1 MM DTT, 99.96% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N_HSQC, HNCACB,CBCA(CO)NH, REMARK 210 HNCO, HN(CA)CO, 3D_15N- REMARK 210 SEPARATED TOCSY, 3D_15N- REMARK 210 SEPARATED NOESY, 3D_13C- REMARK 210 SEPARATED TOCSY, 3D_13C- REMARK 210 SEPARATED TOCSY, 3D_13C- REMARK 210 SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PRONTO 20020517, REMARK 210 CYANA, X-PLOR V3.840 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 246 40.47 -80.83 REMARK 500 1 GLU A 250 -159.20 -106.22 REMARK 500 1 TYR A 251 -42.96 76.67 REMARK 500 1 PHE A 252 -94.16 -132.19 REMARK 500 1 SER A 257 20.75 -149.12 REMARK 500 1 LEU A 260 152.07 67.54 REMARK 500 1 LYS A 262 -69.83 -104.91 REMARK 500 1 THR A 269 -12.40 87.27 REMARK 500 1 GLN A 293 32.37 71.93 REMARK 500 1 LEU A 297 -77.54 66.66 REMARK 500 2 PRO A 249 -73.67 -75.07 REMARK 500 2 TYR A 251 -86.66 -174.03 REMARK 500 2 MET A 261 165.53 61.59 REMARK 500 2 THR A 269 -18.98 88.95 REMARK 500 2 THR A 295 129.13 69.50 REMARK 500 2 LEU A 297 -85.20 61.32 REMARK 500 3 PRO A 246 33.19 -86.96 REMARK 500 3 TYR A 251 -33.13 -172.41 REMARK 500 3 PHE A 252 -75.26 -83.39 REMARK 500 3 LEU A 260 84.72 41.69 REMARK 500 3 MET A 261 145.39 -34.65 REMARK 500 3 THR A 269 -13.65 86.17 REMARK 500 3 LYS A 287 36.75 -159.85 REMARK 500 3 LYS A 291 -65.84 -96.34 REMARK 500 3 THR A 295 123.65 70.53 REMARK 500 3 LEU A 297 -87.25 65.44 REMARK 500 4 SER A 245 116.88 70.77 REMARK 500 4 PHE A 248 91.39 64.84 REMARK 500 4 PHE A 252 -69.95 -150.93 REMARK 500 4 SER A 257 20.57 -151.29 REMARK 500 4 LEU A 260 90.85 59.58 REMARK 500 4 MET A 261 154.59 -47.18 REMARK 500 4 THR A 269 -19.73 85.80 REMARK 500 4 LYS A 287 45.79 -146.67 REMARK 500 4 SER A 292 14.88 -162.14 REMARK 500 4 GLN A 293 70.50 60.13 REMARK 500 4 THR A 295 110.37 61.50 REMARK 500 4 LEU A 297 91.59 60.81 REMARK 500 4 HIS A 298 103.57 63.21 REMARK 500 5 GLU A 247 81.88 48.48 REMARK 500 5 GLU A 250 -174.87 173.27 REMARK 500 5 PHE A 252 -75.86 -139.60 REMARK 500 5 SER A 257 20.79 -150.22 REMARK 500 5 LEU A 260 -15.54 69.72 REMARK 500 5 MET A 261 145.64 69.68 REMARK 500 5 THR A 269 -26.12 89.49 REMARK 500 5 SER A 292 -29.17 -154.48 REMARK 500 5 THR A 295 121.43 70.05 REMARK 500 6 PHE A 248 82.63 -154.99 REMARK 500 6 GLU A 250 -68.60 -102.38 REMARK 500 6 PHE A 252 -84.16 -135.09 REMARK 500 6 LEU A 260 88.38 54.41 REMARK 500 6 THR A 269 -25.62 80.05 REMARK 500 6 LYS A 287 73.88 -154.64 REMARK 500 6 PRO A 290 3.72 -68.16 REMARK 500 6 SER A 292 -9.82 -142.88 REMARK 500 6 LEU A 297 -81.83 67.94 REMARK 500 7 GLU A 247 -71.18 74.99 REMARK 500 7 GLU A 250 -87.44 53.26 REMARK 500 7 PHE A 252 -76.53 -78.44 REMARK 500 7 SER A 257 15.14 -146.43 REMARK 500 7 LEU A 260 93.72 55.03 REMARK 500 7 MET A 261 153.21 -46.43 REMARK 500 7 THR A 269 -49.50 79.06 REMARK 500 7 THR A 295 108.34 66.69 REMARK 500 7 HIS A 298 102.92 64.83 REMARK 500 8 GLU A 247 -70.27 -112.73 REMARK 500 8 TYR A 251 -31.35 -136.67 REMARK 500 8 PHE A 252 -76.09 -138.48 REMARK 500 8 LEU A 260 -23.90 72.93 REMARK 500 8 MET A 261 120.66 73.81 REMARK 500 8 THR A 269 -28.60 83.64 REMARK 500 8 THR A 295 113.99 71.06 REMARK 500 9 GLU A 247 110.42 64.36 REMARK 500 9 TYR A 251 28.90 48.02 REMARK 500 9 PHE A 252 -79.59 -128.01 REMARK 500 9 SER A 257 14.97 -150.16 REMARK 500 9 LEU A 258 72.57 53.03 REMARK 500 9 LEU A 260 70.60 54.17 REMARK 500 9 MET A 261 154.02 -36.46 REMARK 500 9 THR A 269 -0.10 82.56 REMARK 500 9 SER A 292 12.38 -142.77 REMARK 500 9 THR A 295 113.81 68.06 REMARK 500 9 HIS A 298 99.41 44.09 REMARK 500 9 ASN A 318 -64.35 -149.84 REMARK 500 9 ILE A 320 -162.67 47.42 REMARK 500 10 SER A 245 133.32 69.74 REMARK 500 10 GLU A 247 90.04 61.92 REMARK 500 10 TYR A 251 -16.14 166.41 REMARK 500 10 PHE A 252 -56.73 -135.09 REMARK 500 10 SER A 257 22.85 -156.33 REMARK 500 10 LEU A 260 75.60 42.73 REMARK 500 10 MET A 261 147.56 -35.64 REMARK 500 10 LYS A 262 -60.12 -96.69 REMARK 500 10 THR A 269 -19.07 77.92 REMARK 500 10 LEU A 297 -86.67 66.02 REMARK 500 11 PRO A 249 40.00 -106.25 REMARK 500 11 GLU A 250 -140.08 62.74 REMARK 500 11 TYR A 251 -73.71 71.14 REMARK 500 11 PHE A 252 -75.40 -98.70 REMARK 500 11 ILE A 256 -65.61 -96.02 REMARK 500 11 MET A 261 142.87 -29.24 REMARK 500 11 THR A 269 -29.46 90.07 REMARK 500 11 LYS A 287 61.09 -153.76 REMARK 500 11 THR A 295 114.64 63.05 REMARK 500 11 LEU A 297 -93.42 60.37 REMARK 500 12 GLU A 247 -97.40 -87.50 REMARK 500 12 PHE A 252 -87.11 -140.79 REMARK 500 12 ILE A 256 -66.17 -96.60 REMARK 500 12 MET A 261 176.26 55.97 REMARK 500 12 LYS A 262 -48.62 -149.61 REMARK 500 12 THR A 269 -18.72 85.59 REMARK 500 12 GLU A 294 109.82 -57.27 REMARK 500 13 PHE A 252 -80.52 -130.56 REMARK 500 13 PRO A 255 14.14 -65.05 REMARK 500 13 SER A 257 26.51 -155.85 REMARK 500 13 LEU A 260 90.88 39.21 REMARK 500 13 THR A 269 -35.23 126.72 REMARK 500 13 LYS A 287 48.29 -155.29 REMARK 500 13 SER A 292 18.55 -142.88 REMARK 500 13 THR A 295 112.99 68.28 REMARK 500 13 HIS A 298 86.30 38.69 REMARK 500 14 SER A 245 91.44 66.33 REMARK 500 14 PHE A 248 73.53 54.03 REMARK 500 14 GLU A 250 -169.35 -179.84 REMARK 500 14 PHE A 252 -77.80 -132.01 REMARK 500 14 SER A 257 -5.66 -145.01 REMARK 500 14 LEU A 260 88.90 47.18 REMARK 500 14 THR A 269 -27.97 84.04 REMARK 500 14 LYS A 287 57.24 -145.56 REMARK 500 14 SER A 292 14.55 -143.66 REMARK 500 14 THR A 295 114.87 69.69 REMARK 500 14 HIS A 298 78.41 70.78 REMARK 500 14 ASN A 318 -63.27 -109.08 REMARK 500 14 ILE A 320 -155.72 -110.93 REMARK 500 15 PRO A 246 53.90 -93.23 REMARK 500 15 PHE A 252 -82.20 -147.79 REMARK 500 15 LEU A 260 97.49 65.06 REMARK 500 15 MET A 261 155.95 -48.97 REMARK 500 15 THR A 269 -27.35 82.62 REMARK 500 15 LYS A 291 -60.05 -95.19 REMARK 500 15 THR A 295 108.45 71.06 REMARK 500 15 HIS A 298 86.54 61.04 REMARK 500 16 PRO A 246 -76.87 -67.38 REMARK 500 16 TYR A 251 -103.41 65.18 REMARK 500 16 LEU A 260 -8.10 69.46 REMARK 500 16 MET A 261 141.77 67.32 REMARK 500 16 THR A 269 -29.97 88.71 REMARK 500 16 LYS A 287 81.20 -156.30 REMARK 500 16 THR A 295 108.22 68.71 REMARK 500 16 ASN A 318 -36.51 -151.78 REMARK 500 17 GLU A 247 154.72 71.72 REMARK 500 17 PHE A 252 -64.73 -131.21 REMARK 500 17 THR A 269 -17.78 89.40 REMARK 500 17 SER A 292 17.54 -146.20 REMARK 500 17 THR A 295 121.06 72.80 REMARK 500 18 PHE A 252 -55.22 -149.93 REMARK 500 18 LEU A 260 93.99 54.19 REMARK 500 18 MET A 261 155.37 -43.38 REMARK 500 18 THR A 269 -24.37 101.04 REMARK 500 18 LYS A 287 42.46 -109.46 REMARK 500 18 LYS A 291 -67.20 -92.73 REMARK 500 18 THR A 295 110.95 70.66 REMARK 500 18 HIS A 298 105.92 70.16 REMARK 500 18 ILE A 320 109.21 58.00 REMARK 500 19 PRO A 249 -179.66 -66.43 REMARK 500 19 PHE A 252 -67.86 -138.30 REMARK 500 19 LEU A 260 87.19 52.68 REMARK 500 19 THR A 269 -22.17 87.58 REMARK 500 19 LYS A 287 70.35 -158.25 REMARK 500 19 LYS A 291 -69.25 -99.08 REMARK 500 19 LEU A 297 -76.81 71.40 REMARK 500 20 SER A 245 135.64 71.64 REMARK 500 20 GLU A 247 81.01 57.25 REMARK 500 20 LEU A 260 102.07 66.67 REMARK 500 20 MET A 261 156.59 -45.04 REMARK 500 20 THR A 269 -32.03 81.42 REMARK 500 20 LYS A 287 49.31 -151.05 REMARK 500 20 GLN A 293 83.45 66.46 REMARK 500 20 LEU A 296 99.55 -66.65 REMARK 500 20 HIS A 298 97.96 70.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N87 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A U BOX DOMAIN FROM THE YEAST PROTEIN REMARK 900 PRP19P
DBREF 1T1H A 249 321 UNP Q8VZ40 PUB14_ARATH 249 321
SEQADV 1T1H GLY A 244 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H SER A 245 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H PRO A 246 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H GLU A 247 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H PHE A 248 UNP Q8VZ40 CLONING ARTIFACT
SEQRES 1 A 78 GLY SER PRO GLU PHE PRO GLU TYR PHE ARG CYS PRO ILE SEQRES 2 A 78 SER LEU GLU LEU MET LYS ASP PRO VAL ILE VAL SER THR SEQRES 3 A 78 GLY GLN THR TYR GLU ARG SER SER ILE GLN LYS TRP LEU SEQRES 4 A 78 ASP ALA GLY HIS LYS THR CYS PRO LYS SER GLN GLU THR SEQRES 5 A 78 LEU LEU HIS ALA GLY LEU THR PRO ASN TYR VAL LEU LYS SEQRES 6 A 78 SER LEU ILE ALA LEU TRP CYS GLU SER ASN GLY ILE GLU
HELIX 1 1 ARG A 275 ASP A 283 1 9 HELIX 2 2 LEU A 307 ASN A 318 1 12
SHEET 1 A 3 GLN A 271 GLU A 274 0 SHEET 2 A 3 PRO A 264 VAL A 267 -1 N VAL A 265 O TYR A 273 SHEET 3 A 3 THR A 302 PRO A 303 -1 O THR A 302 N ILE A 266
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000