10 20 30 40 50 60 70 80 1T12 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID TRANSPORT 15-APR-04 1T12
TITLE SOLUTION STRUCTURE OF A NEW LTP1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSPECIFIC LIPID-TRANSFER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-114; COMPND 5 SYNONYM: LTP 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: LTP1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC9
KEYWDS CYSTEIN RICH PROTEIN; LIPID TRANSFER PROTEIN, LIPID KEYWDS 2 TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR P.DA SILVA,C.LANDON,B.INDUSTRI,M.PONCHET,F.VOVELLE
REVDAT 2 24-FEB-09 1T12 1 VERSN REVDAT 1 05-APR-05 1T12 0
JRNL AUTH P.DA SILVA,C.LANDON,B.INDUSTRI,A.MARAIS,D.MARION, JRNL AUTH 2 M.PONCHET,F.VOVELLE JRNL TITL SOLUTION STRUCTURE OF A TOBACCO LIPID TRANSFER JRNL TITL 2 PROTEIN EXHIBITING NEW BIOPHYSICAL AND BIOLOGICAL JRNL TITL 3 FEATURES JRNL REF PROTEINS V. 59 356 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15726627 JRNL DOI 10.1002/PROT.20405
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : BRUNGER, LINGE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE ARE BASED ON A TOTAL REMARK 3 OF 1526 RESTRAINTS AND 47 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1T12 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022179.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8MM TOBACCO LTP1 15N, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 3D_15N-SEPARATED_NOESY, 3D_15N REMARK 210 -SEPARATED_TOCSY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRVIEW, ARIA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND REMARK 210 3D HETERONUCLEAR NMR TECHNIQUES AND MOLECULAR MODELLING
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 4 ARG A 44 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 4 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 5 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 6 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 7 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 21 -51.18 -140.90 REMARK 500 1 SER A 37 33.63 -84.31 REMARK 500 1 ALA A 38 33.16 -145.13 REMARK 500 1 THR A 40 47.31 -77.85 REMARK 500 1 THR A 41 -62.30 62.84 REMARK 500 1 SER A 59 -74.55 -74.79 REMARK 500 1 SER A 84 -58.65 -159.28 REMARK 500 2 THR A 21 -47.51 -140.78 REMARK 500 2 SER A 37 50.18 -105.15 REMARK 500 2 ALA A 38 38.82 -151.92 REMARK 500 2 THR A 40 45.31 -107.58 REMARK 500 2 THR A 41 -68.34 66.80 REMARK 500 2 ALA A 57 -49.52 179.80 REMARK 500 2 VAL A 75 -159.12 -105.42 REMARK 500 2 ASN A 76 67.10 -112.35 REMARK 500 2 SER A 84 -53.43 -165.42 REMARK 500 2 THR A 85 105.36 -37.52 REMARK 500 3 ILE A 2 150.71 -39.60 REMARK 500 3 ASN A 20 59.15 83.31 REMARK 500 3 THR A 21 -67.90 -148.34 REMARK 500 3 PRO A 23 -168.57 -71.74 REMARK 500 3 ALA A 38 -57.40 -154.93 REMARK 500 3 ARG A 39 66.69 -66.94 REMARK 500 3 THR A 40 40.99 -140.32 REMARK 500 3 THR A 41 -66.26 62.99 REMARK 500 3 ALA A 57 -53.85 -172.52 REMARK 500 3 SER A 84 -53.71 -170.76 REMARK 500 3 THR A 85 116.80 -37.19 REMARK 500 3 CYS A 87 39.75 -143.18 REMARK 500 3 LYS A 89 55.30 -152.05 REMARK 500 4 ASN A 20 29.70 39.82 REMARK 500 4 ALA A 38 -54.13 -172.24 REMARK 500 4 THR A 40 39.87 -147.08 REMARK 500 4 THR A 41 -75.01 52.98 REMARK 500 4 TYR A 79 146.48 -179.38 REMARK 500 4 LYS A 80 50.27 -112.17 REMARK 500 4 ILE A 81 59.55 29.75 REMARK 500 4 PRO A 83 11.97 -65.02 REMARK 500 4 SER A 84 26.91 -140.95 REMARK 500 5 THR A 21 -49.98 -159.87 REMARK 500 5 ARG A 26 31.24 -91.25 REMARK 500 5 SER A 37 47.94 -91.47 REMARK 500 5 ALA A 38 48.44 -158.89 REMARK 500 5 ARG A 39 -41.36 -148.85 REMARK 500 5 THR A 40 46.31 -59.81 REMARK 500 5 THR A 41 -57.34 67.46 REMARK 500 5 SER A 84 -53.14 -177.84 REMARK 500 6 ILE A 2 150.94 -48.28 REMARK 500 6 THR A 21 -46.89 -160.19 REMARK 500 6 SER A 37 38.68 -92.74 REMARK 500 6 ALA A 38 49.90 -162.53 REMARK 500 6 ARG A 39 36.71 -147.11 REMARK 500 6 THR A 40 50.04 -140.25 REMARK 500 6 THR A 41 -71.40 68.37 REMARK 500 6 CYS A 73 74.07 -113.75 REMARK 500 6 ILE A 81 52.51 35.88 REMARK 500 6 PRO A 83 4.63 -67.32 REMARK 500 6 SER A 84 34.00 -140.31 REMARK 500 6 LYS A 89 50.81 -102.84 REMARK 500 7 THR A 21 -47.98 -165.92 REMARK 500 7 ARG A 26 37.64 -99.28 REMARK 500 7 ALA A 38 46.53 -71.32 REMARK 500 7 THR A 41 -73.04 57.30 REMARK 500 7 TYR A 79 133.36 -171.98 REMARK 500 7 LYS A 89 61.52 -115.26 REMARK 500 8 THR A 21 -60.50 -126.86 REMARK 500 8 ALA A 38 46.27 -62.47 REMARK 500 8 THR A 40 51.80 -106.63 REMARK 500 8 THR A 41 -67.74 69.66 REMARK 500 8 ALA A 57 -52.35 -175.89 REMARK 500 8 TYR A 79 146.55 -175.52 REMARK 500 8 CYS A 87 39.13 -144.13 REMARK 500 9 THR A 21 -53.70 -137.87 REMARK 500 9 ARG A 39 -12.48 -49.70 REMARK 500 9 THR A 40 39.21 -88.07 REMARK 500 9 THR A 41 -80.59 59.03 REMARK 500 9 VAL A 75 -151.75 -144.72 REMARK 500 9 PRO A 78 38.50 -71.38 REMARK 500 9 SER A 84 -51.67 -169.37 REMARK 500 9 THR A 85 112.00 -33.19 REMARK 500 10 THR A 21 -63.37 -127.71 REMARK 500 10 SER A 37 38.97 -98.90 REMARK 500 10 ALA A 38 48.64 -150.33 REMARK 500 10 ARG A 39 -46.50 -141.85 REMARK 500 10 THR A 40 72.40 -60.88 REMARK 500 10 THR A 41 -83.06 46.60 REMARK 500 10 CYS A 73 79.32 -100.60 REMARK 500 10 ASN A 76 54.27 -90.47 REMARK 500 10 SER A 84 -59.74 -163.10 REMARK 500 10 LYS A 89 38.14 -93.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 17 0.08 SIDE_CHAIN REMARK 500 4 TYR A 79 0.08 SIDE_CHAIN REMARK 500 5 TYR A 17 0.07 SIDE_CHAIN REMARK 500 8 TYR A 17 0.09 SIDE_CHAIN REMARK 500 9 TYR A 17 0.07 SIDE_CHAIN REMARK 500 9 TYR A 79 0.11 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GH1 RELATED DB: PDB
DBREF 1T12 A 1 91 UNP Q42952 NLTP1_TOBAC 24 114
SEQRES 1 A 91 ALA ILE THR CYS GLY GLN VAL THR SER ASN LEU ALA PRO SEQRES 2 A 91 CYS LEU ALA TYR LEU ARG ASN THR GLY PRO LEU GLY ARG SEQRES 3 A 91 CYS CYS GLY GLY VAL LYS ALA LEU VAL ASN SER ALA ARG SEQRES 4 A 91 THR THR GLU ASP ARG GLN ILE ALA CYS THR CYS LEU LYS SEQRES 5 A 91 SER ALA ALA GLY ALA ILE SER GLY ILE ASN LEU GLY LYS SEQRES 6 A 91 ALA ALA GLY LEU PRO SER THR CYS GLY VAL ASN ILE PRO SEQRES 7 A 91 TYR LYS ILE SER PRO SER THR ASP CYS SER LYS VAL GLN
HELIX 1 1 THR A 3 LEU A 11 1 9 HELIX 2 2 LEU A 11 ARG A 19 1 9 HELIX 3 3 ARG A 26 SER A 37 1 12 HELIX 4 4 THR A 41 ILE A 58 1 18 HELIX 5 5 ASN A 62 CYS A 73 1 12
SSBOND 1 CYS A 4 CYS A 50 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.03 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.05
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000