10 20 30 40 50 60 70 80 1SXD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION, SIGNALING PROTEIN 30-MAR-04 1SXD
TITLE SOLUTION STRUCTURE OF THE POINTED (PNT) DOMAIN FROM MGABPA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GA REPEAT BINDING PROTEIN, ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PNT DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GABPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS ALPHA HELICAL, TRANSCRIPTION, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 14
AUTHOR C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH, AUTHOR 2 C.M.SLUPSKY,L.P.MCINTOSH
REVDAT 2 24-FEB-09 1SXD 1 VERSN REVDAT 1 21-SEP-04 1SXD 0
JRNL AUTH C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH, JRNL AUTH 2 C.M.SLUPSKY,L.P.MCINTOSH JRNL TITL DIVERSITY IN STRUCTURE AND FUNCTION OF THE ETS JRNL TITL 2 FAMILY PNT DOMAINS. JRNL REF J.MOL.BIOL. V. 342 1249 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15351649 JRNL DOI 10.1016/J.JMB.2004.07.094
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : J.LINGE, S.O'DONOGHUE, M.NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SXD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB022064.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 7.2; 7.2; 7.2 REMARK 210 IONIC STRENGTH : 40 MM; 40 MM; 40 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM GABPA U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.2, 20MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% REMARK 210 D2O; 1MM GABPA 100%15N,10%13C, REMARK 210 20MM PHOSPHATE BUFFER PH 7.2 REMARK 210 20MM NACL, 2MM DTT, 90% H2O, REMARK 210 10% D2O; 2MM GABPA 100%15N, REMARK 210 20MM PHOSPHATE BUFFER PH 7.2 REMARK 210 20MM NACL, 2MM DTT, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000, SPARKY 3, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 TYR A 184 CE1 TYR A 184 CZ 0.124 REMARK 500 8 TYR A 184 CZ TYR A 184 CE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 208 -47.02 72.12 REMARK 500 1 ASP A 209 54.44 -103.86 REMARK 500 1 ASP A 211 106.93 -56.85 REMARK 500 1 VAL A 234 99.94 -174.39 REMARK 500 1 TYR A 250 42.80 -101.87 REMARK 500 1 ALA A 253 120.10 62.74 REMARK 500 2 THR A 208 93.92 -50.37 REMARK 500 2 ASP A 209 -25.53 169.20 REMARK 500 2 ASP A 211 96.54 -55.21 REMARK 500 2 VAL A 234 98.22 -175.31 REMARK 500 2 ARG A 236 34.46 -95.14 REMARK 500 2 ALA A 253 84.56 56.35 REMARK 500 3 SER A 165 103.01 -54.65 REMARK 500 3 HIS A 166 -7.88 68.87 REMARK 500 3 THR A 208 70.15 -61.22 REMARK 500 3 ASP A 209 27.55 -172.72 REMARK 500 3 VAL A 234 93.40 -174.54 REMARK 500 3 ARG A 236 31.17 -93.78 REMARK 500 4 SER A 165 103.01 -54.65 REMARK 500 4 HIS A 166 -7.88 68.87 REMARK 500 4 THR A 208 70.15 -61.22 REMARK 500 4 ASP A 209 27.55 -172.72 REMARK 500 4 VAL A 234 93.40 -174.54 REMARK 500 4 ARG A 236 31.17 -93.78 REMARK 500 5 SER A 165 103.01 -54.65 REMARK 500 5 HIS A 166 -7.88 68.87 REMARK 500 5 THR A 208 70.15 -61.22 REMARK 500 5 ASP A 209 27.55 -172.72 REMARK 500 5 VAL A 234 93.40 -174.54 REMARK 500 5 ARG A 236 31.17 -93.78 REMARK 500 6 SER A 165 103.01 -54.65 REMARK 500 6 HIS A 166 -7.88 68.87 REMARK 500 6 THR A 208 70.15 -61.22 REMARK 500 6 ASP A 209 27.55 -172.72 REMARK 500 6 VAL A 234 93.40 -174.54 REMARK 500 6 ARG A 236 31.17 -93.78 REMARK 500 7 SER A 165 103.01 -54.65 REMARK 500 7 HIS A 166 -7.88 68.87 REMARK 500 7 THR A 208 70.15 -61.22 REMARK 500 7 ASP A 209 27.55 -172.72 REMARK 500 7 VAL A 234 93.40 -174.54 REMARK 500 7 ARG A 236 31.17 -93.78 REMARK 500 8 SER A 165 56.89 -92.73 REMARK 500 8 THR A 208 -19.23 176.66 REMARK 500 8 VAL A 234 100.02 -175.88 REMARK 500 8 ARG A 236 31.85 -89.66 REMARK 500 8 ALA A 253 74.05 51.04 REMARK 500 9 ASP A 209 -43.34 -138.01 REMARK 500 9 VAL A 234 96.92 -177.72 REMARK 500 9 ARG A 236 31.55 -87.71 REMARK 500 9 ALA A 253 87.55 53.13 REMARK 500 10 MET A 167 -34.40 70.24 REMARK 500 10 THR A 208 -49.36 71.00 REMARK 500 10 VAL A 234 100.09 -175.35 REMARK 500 10 TYR A 250 49.70 -99.21 REMARK 500 10 VAL A 251 5.88 -168.52 REMARK 500 10 ALA A 253 85.92 60.90 REMARK 500 11 THR A 208 -33.21 69.90 REMARK 500 11 LEU A 215 41.90 -86.13 REMARK 500 11 VAL A 234 101.64 -170.08 REMARK 500 11 ARG A 236 32.12 -88.62 REMARK 500 11 TYR A 250 41.52 -107.76 REMARK 500 11 VAL A 251 11.11 -160.58 REMARK 500 11 LEU A 252 -63.96 66.83 REMARK 500 11 ALA A 253 65.05 168.39 REMARK 500 12 HIS A 166 -87.56 -117.65 REMARK 500 12 ASP A 209 66.20 68.08 REMARK 500 12 VAL A 234 91.90 -174.92 REMARK 500 12 ARG A 236 36.91 -92.92 REMARK 500 12 TYR A 250 41.10 -105.40 REMARK 500 12 ALA A 253 79.83 53.97 REMARK 500 13 SER A 165 42.36 -170.71 REMARK 500 13 HIS A 166 -93.95 59.60 REMARK 500 13 MET A 167 -13.42 69.52 REMARK 500 13 THR A 208 84.35 -51.30 REMARK 500 13 ASP A 209 -24.57 175.91 REMARK 500 13 ASP A 211 102.01 -59.15 REMARK 500 13 VAL A 234 100.16 -175.90 REMARK 500 13 ARG A 236 34.51 -91.12 REMARK 500 13 TYR A 250 44.88 -104.59 REMARK 500 13 VAL A 251 4.33 -158.97 REMARK 500 13 ALA A 253 73.73 57.10 REMARK 500 14 THR A 208 -46.83 64.71 REMARK 500 14 ASP A 209 48.84 -93.82 REMARK 500 14 VAL A 234 102.58 -172.99 REMARK 500 14 ALA A 253 80.87 57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 TYR A 184 0.09 SIDE_CHAIN REMARK 500 11 TYR A 184 0.05 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1SXD A 168 254 UNP Q00422 GABPA_MOUSE 168 254
SEQADV 1SXD GLY A 164 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD SER A 165 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD HIS A 166 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD MET A 167 UNP Q00422 CLONING ARTIFACT
SEQRES 1 A 91 GLY SER HIS MET ALA ALA LEU GLU GLY TYR ARG LYS GLU SEQRES 2 A 91 GLN GLU ARG LEU GLY ILE PRO TYR ASP PRO ILE HIS TRP SEQRES 3 A 91 SER THR ASP GLN VAL LEU HIS TRP VAL VAL TRP VAL MET SEQRES 4 A 91 LYS GLU PHE SER MET THR ASP ILE ASP LEU THR THR LEU SEQRES 5 A 91 ASN ILE SER GLY ARG GLU LEU CYS SER LEU ASN GLN GLU SEQRES 6 A 91 ASP PHE PHE GLN ARG VAL PRO ARG GLY GLU ILE LEU TRP SEQRES 7 A 91 SER HIS LEU GLU LEU LEU ARG LYS TYR VAL LEU ALA SER
HELIX 1 1 HIS A 166 GLU A 178 1 13 HELIX 2 2 ASP A 185 TRP A 189 5 5 HELIX 3 3 SER A 190 PHE A 205 1 16 HELIX 4 4 LEU A 212 ASN A 216 5 5 HELIX 5 5 SER A 218 LEU A 225 1 8 HELIX 6 6 ASN A 226 VAL A 234 1 9 HELIX 7 7 GLY A 237 TYR A 250 1 14
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000