10 20 30 40 50 60 70 80 1SW8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CALCIUM-BINDING PROTEIN 30-MAR-04 1SW8
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN N60D TITLE 2 CALMODULIN REFINED WITH PARAMAGNETISM BASED STRATEGY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS CALCIUM, CALMODULIN, EF-HAND,NMR, LANTHANIDE, STRUCTURAL KEYWDS 2 PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS, CALCIUM- KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR I.BERTINI,C.DEL BIANCO,I.GELIS,N.KATSAROS,C.LUCHINAT, AUTHOR 2 G.PARIGI,M.PEANA,A.PROVENZANI,M.A.ZORODDU,STRUCTURAL AUTHOR 3 PROTEOMICS IN EUROPE (SPINE)
REVDAT 3 24-FEB-09 1SW8 1 VERSN REVDAT 2 11-MAY-04 1SW8 1 JRNL REVDAT 1 06-APR-04 1SW8 0
JRNL AUTH I.BERTINI,C.DEL BIANCO,I.GELIS,N.KATSAROS, JRNL AUTH 2 C.LUCHINAT,G.PARIGI,M.PEANA,A.PROVENZANI, JRNL AUTH 3 M.A.ZORODDU JRNL TITL EXPERIMENTALLY EXPLORING THE CONFORMATIONAL SPACE JRNL TITL 2 SAMPLED BY DOMAIN REORIENTATION IN CALMODULIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 6841 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15100408 JRNL DOI 10.1073/PNAS.0308641101
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WITH PSEUDOCONTACT SHIFTS
REMARK 4 REMARK 4 1SW8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB022048.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 400 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CALMODULIN U-15N, 20 MM REMARK 210 MES, 400 MM KCL, 90% H20, 10% REMARK 210 D20; 1 MM CALMODULIN U-15N- REMARK 210 13C, 20 MM MES, 400 MM KCL, REMARK 210 90% H20, 10% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1 3.1, XEASY 1.3, REMARK 210 DYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS CALCULATED USING DIMAGNETIC, DIHEDRAL REMARK 210 ANGLE RESTRAINTS AND PSEUDOCONTACT SHIFTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 22 CA CA A 80 0.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -39.16 88.45 REMARK 500 1 GLN A 3 33.20 -140.69 REMARK 500 1 LEU A 4 28.38 40.43 REMARK 500 1 PHE A 16 -39.18 -37.60 REMARK 500 1 GLN A 41 178.14 -49.95 REMARK 500 1 ASN A 42 64.83 -154.39 REMARK 500 1 ASP A 56 108.35 -43.88 REMARK 500 1 ASP A 58 -35.78 -39.50 REMARK 500 1 ASP A 60 -49.56 176.88 REMARK 500 2 LEU A 4 -38.86 -175.61 REMARK 500 2 THR A 5 -32.45 -37.47 REMARK 500 2 GLN A 41 -174.25 -52.59 REMARK 500 2 ASN A 42 60.60 -163.65 REMARK 500 2 ASP A 56 109.79 -53.12 REMARK 500 2 ASP A 60 -50.66 176.26 REMARK 500 3 GLN A 3 -57.42 -125.69 REMARK 500 3 LEU A 4 -34.21 -176.68 REMARK 500 3 THR A 5 -31.65 -37.58 REMARK 500 3 LEU A 39 -70.78 -81.89 REMARK 500 3 ASN A 42 61.67 -166.39 REMARK 500 3 ASP A 56 109.28 -49.74 REMARK 500 3 ASP A 60 -60.81 168.30 REMARK 500 4 GLN A 3 -72.71 -140.06 REMARK 500 4 LEU A 4 32.13 -173.35 REMARK 500 4 ILE A 9 -39.25 -39.42 REMARK 500 4 GLN A 41 -172.21 -61.06 REMARK 500 4 ASN A 42 60.71 -167.51 REMARK 500 4 ASP A 56 107.94 -51.79 REMARK 500 4 ASP A 60 -67.18 176.22 REMARK 500 5 ASP A 2 19.88 55.05 REMARK 500 5 PHE A 16 -32.18 -36.55 REMARK 500 5 ASP A 20 39.65 -96.59 REMARK 500 5 ILE A 27 77.84 -104.25 REMARK 500 5 ASP A 56 108.19 -50.48 REMARK 500 5 ASP A 58 -35.00 -39.86 REMARK 500 5 ASP A 60 -50.72 -167.64 REMARK 500 6 GLN A 3 20.64 -141.59 REMARK 500 6 LEU A 4 -61.95 69.69 REMARK 500 6 THR A 28 150.76 -46.06 REMARK 500 6 ASN A 42 62.31 -156.41 REMARK 500 6 ASP A 56 106.38 -54.07 REMARK 500 6 ASP A 58 -33.51 -38.93 REMARK 500 6 ASP A 60 -55.43 -164.20 REMARK 500 7 LEU A 4 -60.45 -127.45 REMARK 500 7 ASP A 22 -75.56 -43.59 REMARK 500 7 THR A 28 153.88 -47.57 REMARK 500 7 LEU A 39 35.51 -89.79 REMARK 500 7 GLN A 41 178.31 -49.05 REMARK 500 7 ASN A 42 57.09 -165.08 REMARK 500 7 ASP A 56 108.84 -50.22 REMARK 500 7 ASP A 60 -54.91 170.59 REMARK 500 8 LEU A 4 -40.76 -172.32 REMARK 500 8 THR A 5 -30.24 -39.72 REMARK 500 8 LEU A 39 46.76 -87.09 REMARK 500 8 ASN A 42 64.01 -172.55 REMARK 500 8 ASP A 56 109.05 -55.22 REMARK 500 8 ASP A 60 -63.44 -162.53 REMARK 500 9 GLN A 3 35.95 -178.94 REMARK 500 9 PHE A 16 -39.84 -38.05 REMARK 500 9 ASP A 20 46.04 -99.96 REMARK 500 9 GLN A 41 172.82 -45.73 REMARK 500 9 ASN A 42 59.86 -145.84 REMARK 500 9 ASP A 56 107.92 -49.10 REMARK 500 9 ASP A 60 -51.77 173.13 REMARK 500 10 LEU A 4 -51.61 -174.76 REMARK 500 10 PHE A 16 -35.05 -37.44 REMARK 500 10 ASP A 20 56.14 -92.96 REMARK 500 10 THR A 29 -38.65 -37.22 REMARK 500 10 GLN A 41 167.99 -43.49 REMARK 500 10 ASP A 60 -64.32 -179.98 REMARK 500 10 ASP A 64 -178.93 -172.73 REMARK 500 11 ASP A 2 18.00 59.95 REMARK 500 11 PHE A 19 -38.94 -38.01 REMARK 500 11 ASP A 56 109.65 -51.20 REMARK 500 11 ASP A 58 -35.39 -39.33 REMARK 500 11 ASP A 60 -54.73 -168.61 REMARK 500 12 LEU A 4 -45.06 162.60 REMARK 500 12 THR A 29 -36.49 -38.08 REMARK 500 12 GLN A 41 176.62 -48.65 REMARK 500 12 ASN A 42 61.96 -153.89 REMARK 500 12 ASP A 56 106.60 -52.58 REMARK 500 12 ASP A 58 -34.62 -38.09 REMARK 500 12 ASP A 60 -54.92 -151.06 REMARK 500 13 LEU A 4 -52.15 87.56 REMARK 500 13 ASN A 42 63.22 -157.47 REMARK 500 13 ASP A 58 -35.37 -35.80 REMARK 500 13 ASP A 60 -54.71 -155.79 REMARK 500 14 GLN A 3 -52.76 -122.61 REMARK 500 14 LEU A 4 -39.55 -175.28 REMARK 500 14 THR A 5 -35.20 -36.98 REMARK 500 14 ASP A 56 105.92 -46.44 REMARK 500 14 ASP A 60 -58.42 163.37 REMARK 500 15 GLN A 3 -51.21 -137.10 REMARK 500 15 LEU A 4 -35.79 178.69 REMARK 500 15 THR A 5 -29.26 -38.29 REMARK 500 15 ASP A 20 53.42 -105.42 REMARK 500 15 ASP A 56 107.75 -50.42 REMARK 500 15 ALA A 57 -61.00 -105.02 REMARK 500 15 ASP A 60 -70.61 167.60 REMARK 500 16 ASP A 2 -54.71 72.42 REMARK 500 16 THR A 29 -36.71 -37.20 REMARK 500 16 LEU A 39 41.71 -89.94 REMARK 500 16 GLN A 41 -178.86 -50.25 REMARK 500 16 ASN A 42 60.84 -165.82 REMARK 500 16 ASP A 60 -60.12 -177.11 REMARK 500 17 ASP A 2 -50.86 78.29 REMARK 500 17 GLN A 3 -39.44 -130.50 REMARK 500 17 ASP A 22 -51.21 -146.66 REMARK 500 17 GLN A 41 -43.91 -132.40 REMARK 500 17 ASP A 56 109.85 -57.43 REMARK 500 17 ASP A 60 -52.24 172.03 REMARK 500 18 GLN A 3 -78.38 -141.00 REMARK 500 18 LEU A 4 29.04 -166.36 REMARK 500 18 GLN A 41 -49.17 -130.28 REMARK 500 18 ASP A 56 108.32 -55.54 REMARK 500 18 ASP A 60 -65.22 170.24 REMARK 500 19 GLN A 3 -56.77 -164.06 REMARK 500 19 LEU A 4 -50.20 176.32 REMARK 500 19 GLN A 41 -173.28 -69.09 REMARK 500 19 ASN A 42 58.06 -168.18 REMARK 500 19 ASP A 56 100.93 -47.36 REMARK 500 19 ASP A 60 -75.28 163.03 REMARK 500 19 THR A 62 172.20 -58.83 REMARK 500 20 ASP A 2 -19.69 162.39 REMARK 500 20 GLN A 3 44.43 78.79 REMARK 500 20 LEU A 4 -35.03 175.23 REMARK 500 20 ASP A 60 -56.50 -170.32 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 80 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD2 REMARK 620 2 ASP A 20 OD1 163.9 REMARK 620 3 ASP A 24 OD1 54.4 109.5 REMARK 620 4 THR A 26 O 97.0 73.8 64.1 REMARK 620 5 GLU A 31 OE1 120.0 71.0 135.8 74.5 REMARK 620 6 GLU A 31 OE2 77.3 107.7 96.2 59.3 46.8 REMARK 620 7 ASP A 24 N 75.6 98.9 69.3 126.2 154.5 152.9 REMARK 620 8 GLY A 23 N 90.8 99.2 123.4 171.7 99.1 120.2 58.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 81 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE1 REMARK 620 2 GLU A 67 OE2 44.5 REMARK 620 3 ASP A 56 OD1 106.0 71.2 REMARK 620 4 ASP A 60 OD1 161.3 149.6 80.0 REMARK 620 5 ASP A 60 OD2 151.1 109.2 66.0 47.5 REMARK 620 6 THR A 62 N 114.0 129.5 77.3 49.2 92.0 REMARK 620 7 THR A 62 O 57.7 83.7 88.4 105.7 144.0 56.5 REMARK 620 8 ASP A 58 OD1 91.4 48.6 55.5 106.3 60.8 131.5 125.3 REMARK 620 N 1 2 3 4 5 6 7
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 80 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 81
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CIRMMP35 RELATED DB: TARGETDB
DBREF 1SW8 A 1 79 UNP P62158 CALM_HUMAN 2 80
SEQADV 1SW8 ASP A 60 UNP P62158 ASN 61 ENGINEERED
SEQRES 1 A 79 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 79 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 79 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 79 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 79 ASN GLU VAL ASP ALA ASP GLY ASP GLY THR ILE ASP PHE SEQRES 6 A 79 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 79 THR
HET CA A 80 1 HET CA A 81 1
HETNAM CA CALCIUM ION
FORMUL 2 CA 2(CA 2+)
HELIX 1 1 LEU A 4 ASP A 20 1 17 HELIX 2 2 THR A 28 LEU A 39 1 12 HELIX 3 3 THR A 44 ASP A 56 1 13 HELIX 4 4 PHE A 65 THR A 79 1 15
SHEET 1 A 2 THR A 26 ILE A 27 0 SHEET 2 A 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27
LINK OD2 ASP A 22 CA CA A 80 1555 1555 2.29 LINK CA CA A 80 OD1 ASP A 20 1555 1555 2.30 LINK CA CA A 80 OD1 ASP A 24 1555 1555 2.79 LINK CA CA A 80 O THR A 26 1555 1555 2.37 LINK CA CA A 80 OE1 GLU A 31 1555 1555 2.85 LINK CA CA A 80 OE2 GLU A 31 1555 1555 2.76 LINK CA CA A 80 N ASP A 24 1555 1555 2.87 LINK CA CA A 80 N GLY A 23 1555 1555 2.80 LINK CA CA A 81 OE1 GLU A 67 1555 1555 2.86 LINK CA CA A 81 OE2 GLU A 67 1555 1555 3.01 LINK CA CA A 81 OD1 ASP A 56 1555 1555 2.19 LINK CA CA A 81 OD1 ASP A 60 1555 1555 3.02 LINK CA CA A 81 OD2 ASP A 60 1555 1555 2.19 LINK CA CA A 81 N THR A 62 1555 1555 3.18 LINK CA CA A 81 O THR A 62 1555 1555 2.24 LINK CA CA A 81 OD1 ASP A 58 1555 1555 2.81
SITE 1 AC1 6 ASP A 20 ASP A 22 GLY A 23 ASP A 24 SITE 2 AC1 6 THR A 26 GLU A 31 SITE 1 AC2 6 ASP A 56 ASP A 58 ASP A 60 THR A 62 SITE 2 AC2 6 ASP A 64 GLU A 67
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000