10 20 30 40 50 60 70 80 1ST9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 25-MAR-04 1ST9
TITLE CRYSTAL STRUCTURE OF A SOLUBLE DOMAIN OF RESA IN THE TITLE 2 OXIDISED FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL-DISULFIDE OXIDOREDUCTASE RESA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RESA, BSU23150; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRAN8
KEYWDS THIOREDOXIN-LIKE DOMAIN, ALPHA-BETA PROTEIN, SOLUBLE DOMAIN, KEYWDS 2 MEMBRANE PROTEIN, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.CROW,R.M.ACHESON,N.E.LE BRUN,A.OUBRIE
REVDAT 3 24-FEB-09 1ST9 1 VERSN REVDAT 2 01-JUN-04 1ST9 1 JRNL REVDAT 1 11-MAY-04 1ST9 0
JRNL AUTH A.CROW,R.M.ACHESON,N.E.LE BRUN,A.OUBRIE JRNL TITL STRUCTURAL BASIS OF REDOX-COUPLED PROTEIN JRNL TITL 2 SUBSTRATE SELECTION BY THE CYTOCHROME C JRNL TITL 3 BIOSYNTHESIS PROTEIN RESA. JRNL REF J.BIOL.CHEM. V. 279 23654 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15047692 JRNL DOI 10.1074/JBC.M402823200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1350 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2273 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2009 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3081 ; 1.680 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4719 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2481 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 442 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 447 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2297 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1229 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 288 ; 0.253 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.324 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.399 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 1.634 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ; 2.464 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 897 ; 3.674 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 833 ; 5.268 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2273 ; 1.076 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 434 ;12.815 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2215 ; 5.224 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 5% OF THE DATA WAS USED AS 'RFREE' REMARK 3 THROUGHOUT REFINEMENT TO GIVE RFREE=15, RWORK=12.3. REMARK 3 SUBSEQUENTLY, A FINAL ROUND OF REFINEMENT USING ALL AVAILABLE REMARK 3 DATA, INCLUDING REFLECTIONS MARKED AS RFREE IN THE SF FILE, REMARK 3 WAS PERFORMED TO GIVE A FINAL CRYSTALLOGRAPHIC RFACTOR REMARK 3 (RCRYST=12.3).
REMARK 4 REMARK 4 1ST9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB021984.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; ESRF REMARK 200 BEAMLINE : 14.1; BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9793, 0.9184; 0.8856 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: SE-MET PROTEIN MODEL OBTAINED BY MAD METHODS REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-27% PEG 4000, 0.2M AMMONIUM REMARK 280 ACETATE, 0.1M SODIUM CITRATE PH 4.8 - 5.8, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.28267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.14133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.71200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.57067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 137.85333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER OF RESA
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 36 REMARK 465 GLY A 174 REMARK 465 GLU A 175 REMARK 465 THR A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 GLY B 38 REMARK 465 GLY B 174 REMARK 465 GLU B 175 REMARK 465 THR B 176 REMARK 465 SER B 177 REMARK 465 GLY B 178
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 148 O HOH A 545 1.44 REMARK 500 ND2 ASN B 119 O HOH B 716 1.77 REMARK 500 O HOH B 646 O HOH B 710 1.82 REMARK 500 O PRO B 173 O HOH B 690 1.97 REMARK 500 O HOH B 563 O HOH B 694 1.97 REMARK 500 O HOH B 696 O HOH B 711 1.99 REMARK 500 O HOH A 574 O HOH B 642 2.06 REMARK 500 O HOH A 623 O HOH A 671 2.12 REMARK 500 O HOH A 716 O HOH A 717 2.14 REMARK 500 O HOH B 624 O HOH B 644 2.15 REMARK 500 CH2 TRP B 72 O HOH B 585 2.16 REMARK 500 N GLU A 37 O HOH A 717 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 695 O HOH B 569 6554 1.63 REMARK 500 SD MET B 163 O HOH A 715 1455 1.79 REMARK 500 O HOH B 687 O HOH B 703 5555 1.95 REMARK 500 O HOH A 523 O HOH B 697 1655 2.02 REMARK 500 O HOH B 522 O HOH B 585 6554 2.06 REMARK 500 O HOH B 689 O HOH B 703 5555 2.08 REMARK 500 O HOH A 556 O HOH B 697 1655 2.12 REMARK 500 O HOH B 552 O HOH B 595 5555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 163 SD MET B 163 CE -0.402 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 58 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP B 58 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 127 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 137 -84.79 -113.03 REMARK 500 LYS B 114 -72.64 -68.19 REMARK 500 SER B 137 -68.85 -120.38 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 649 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 697 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH B 702 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 7.80 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 503 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU9 RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF THE SOLUBLE DOMAIN OF RESA
DBREF 1ST9 A 36 178 UNP P35160 RESA_BACSU 37 179 DBREF 1ST9 B 36 178 UNP P35160 RESA_BACSU 37 179
SEQRES 1 A 143 SER GLU GLY SER ASP ALA PRO ASN PHE VAL LEU GLU ASP SEQRES 2 A 143 THR ASN GLY LYS ARG ILE GLU LEU SER ASP LEU LYS GLY SEQRES 3 A 143 LYS GLY VAL PHE LEU ASN PHE TRP GLY THR TRP CYS GLU SEQRES 4 A 143 PRO CYS LYS LYS GLU PHE PRO TYR MET ALA ASN GLN TYR SEQRES 5 A 143 LYS HIS PHE LYS SER GLN GLY VAL GLU ILE VAL ALA VAL SEQRES 6 A 143 ASN VAL GLY GLU SER LYS ILE ALA VAL HIS ASN PHE MET SEQRES 7 A 143 LYS SER TYR GLY VAL ASN PHE PRO VAL VAL LEU ASP THR SEQRES 8 A 143 ASP ARG GLN VAL LEU ASP ALA TYR ASP VAL SER PRO LEU SEQRES 9 A 143 PRO THR THR PHE LEU ILE ASN PRO GLU GLY LYS VAL VAL SEQRES 10 A 143 LYS VAL VAL THR GLY THR MET THR GLU SER MET ILE HIS SEQRES 11 A 143 ASP TYR MET ASN LEU ILE LYS PRO GLY GLU THR SER GLY SEQRES 1 B 143 SER GLU GLY SER ASP ALA PRO ASN PHE VAL LEU GLU ASP SEQRES 2 B 143 THR ASN GLY LYS ARG ILE GLU LEU SER ASP LEU LYS GLY SEQRES 3 B 143 LYS GLY VAL PHE LEU ASN PHE TRP GLY THR TRP CYS GLU SEQRES 4 B 143 PRO CYS LYS LYS GLU PHE PRO TYR MET ALA ASN GLN TYR SEQRES 5 B 143 LYS HIS PHE LYS SER GLN GLY VAL GLU ILE VAL ALA VAL SEQRES 6 B 143 ASN VAL GLY GLU SER LYS ILE ALA VAL HIS ASN PHE MET SEQRES 7 B 143 LYS SER TYR GLY VAL ASN PHE PRO VAL VAL LEU ASP THR SEQRES 8 B 143 ASP ARG GLN VAL LEU ASP ALA TYR ASP VAL SER PRO LEU SEQRES 9 B 143 PRO THR THR PHE LEU ILE ASN PRO GLU GLY LYS VAL VAL SEQRES 10 B 143 LYS VAL VAL THR GLY THR MET THR GLU SER MET ILE HIS SEQRES 11 B 143 ASP TYR MET ASN LEU ILE LYS PRO GLY GLU THR SER GLY
HET EDO A 501 4 HET EDO A 502 4 HET EDO B 503 4 HET EDO A 504 4
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *434(H2 O)
HELIX 1 1 SER A 57 LYS A 60 5 4 HELIX 2 2 CYS A 73 LYS A 91 1 19 HELIX 3 3 SER A 105 TYR A 116 1 12 HELIX 4 4 ARG A 128 TYR A 134 1 7 HELIX 5 5 THR A 160 LYS A 172 1 13 HELIX 6 6 SER B 57 LYS B 60 5 4 HELIX 7 7 CYS B 73 LYS B 91 1 19 HELIX 8 8 SER B 105 TYR B 116 1 12 HELIX 9 9 ARG B 128 TYR B 134 1 7 HELIX 10 10 THR B 160 LYS B 172 1 13
SHEET 1 A 6 SER A 39 ASP A 40 0 SHEET 2 A 6 LYS A 150 THR A 156 -1 O VAL A 151 N SER A 39 SHEET 3 A 6 THR A 141 ILE A 145 -1 N LEU A 144 O LYS A 153 SHEET 4 A 6 GLY A 63 TRP A 69 -1 N PHE A 68 O THR A 141 SHEET 5 A 6 VAL A 95 VAL A 102 1 O GLU A 96 N GLY A 63 SHEET 6 A 6 VAL A 122 ASP A 125 1 O VAL A 123 N ASN A 101 SHEET 1 B 2 VAL A 45 GLU A 47 0 SHEET 2 B 2 ARG A 53 GLU A 55 -1 O ILE A 54 N LEU A 46 SHEET 1 C 7 ARG B 53 GLU B 55 0 SHEET 2 C 7 VAL B 45 ASP B 48 -1 N LEU B 46 O ILE B 54 SHEET 3 C 7 VAL B 122 ASP B 125 -1 O LEU B 124 N GLU B 47 SHEET 4 C 7 VAL B 95 VAL B 102 1 N ASN B 101 O VAL B 123 SHEET 5 C 7 GLY B 63 TRP B 69 1 N GLY B 63 O GLU B 96 SHEET 6 C 7 THR B 141 ILE B 145 -1 O THR B 141 N PHE B 68 SHEET 7 C 7 VAL B 151 THR B 156 -1 O VAL B 155 N THR B 142
SSBOND 1 CYS A 73 CYS A 76 1555 1555 2.17 SSBOND 2 CYS B 73 CYS B 76 1555 1555 2.15
CISPEP 1 LEU A 139 PRO A 140 0 -6.33 CISPEP 2 LEU B 139 PRO B 140 0 -5.75
SITE 1 AC1 6 ALA A 41 SER A 57 LYS A 60 GLY A 149 SITE 2 AC1 6 HOH A 515 HOH A 582 SITE 1 AC2 7 LYS A 153 HOH A 529 HOH A 595 TYR B 134 SITE 2 AC2 7 ASP B 135 VAL B 154 HOH B 715 SITE 1 AC3 8 ALA B 41 ASN B 43 LEU B 56 SER B 57 SITE 2 AC3 8 LYS B 60 GLY B 149 HOH B 589 HOH B 661 SITE 1 AC4 7 ALA A 133 TYR A 134 VAL A 151 HOH A 513 SITE 2 AC4 7 HOH A 542 HOH A 696 HOH A 708
CRYST1 61.008 61.008 165.424 90.00 90.00 120.00 P 65 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016391 0.009464 0.000000 0.00000
SCALE2 0.000000 0.018927 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006045 0.00000