10 20 30 40 50 60 70 80 1ST7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 25-MAR-04 1ST7
TITLE SOLUTION STRUCTURE OF ACYL COENZYME A BINDING PROTEIN FROM TITLE 2 YEAST
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACBP; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ACB1, ACB, YGR037C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETACBP
KEYWDS FOUR HELIX BUNDLE, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TEILUM,T.THORMANN,N.R.CATERER,H.I.POULSEN,P.H.JENSEN, AUTHOR 2 J.KNUDSEN,B.B.KRAGELUND,F.M.POULSEN
REVDAT 2 24-FEB-09 1ST7 1 VERSN REVDAT 1 01-MAR-05 1ST7 0
JRNL AUTH K.TEILUM,T.THORMANN,N.R.CATERER,H.I.POULSEN, JRNL AUTH 2 P.H.JENSEN,J.KNUDSEN,B.B.KRAGELUND,F.M.POULSEN JRNL TITL DIFFERENT SECONDARY STRUCTURE ELEMENTS AS JRNL TITL 2 SCAFFOLDS FOR PROTEIN FOLDING TRANSITION STATES OF JRNL TITL 3 TWO HOMOLOGOUS FOUR-HELIX BUNDLES JRNL REF PROTEINS V. 59 80 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15690348 JRNL DOI 10.1002/PROT.20340
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON 1040 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS, 133 DIHEDRAL ANGLE CONSTRAINTS, REMARK 3 13 DISTANCE CONSTRAINTS FROM HYDROGEN BONDS
REMARK 4 REMARK 4 1ST7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021982.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.75 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.5 MM U-15N,13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING AND REMARK 210 CHARMM22 WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LEU A 25 N - CA - CB ANGL. DEV. = -13.0 DEGREES REMARK 500 5 TYR A 84 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 TYR A 84 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 6 TYR A 84 CB - CG - CD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 10 TYR A 84 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 11 TYR A 84 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 11 TYR A 84 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 12 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 TYR A 84 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 12 TYR A 84 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 16 TYR A 84 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 16 TYR A 84 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 19 TYR A 53 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 19 TYR A 53 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 19 TYR A 73 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 25.08 -142.86 REMARK 500 1 THR A 17 74.74 -102.46 REMARK 500 1 ASP A 40 -75.33 -109.96 REMARK 500 1 LYS A 43 84.94 -160.15 REMARK 500 1 LYS A 62 -36.10 -31.09 REMARK 500 1 SER A 65 -59.79 -26.78 REMARK 500 2 THR A 17 79.18 -106.10 REMARK 500 2 ASN A 39 107.69 -55.80 REMARK 500 2 GLU A 42 29.08 -146.08 REMARK 500 2 ILE A 46 -64.72 -104.12 REMARK 500 2 LYS A 62 -26.43 -29.74 REMARK 500 2 SER A 65 35.71 -86.44 REMARK 500 3 THR A 17 77.96 -102.40 REMARK 500 3 GLU A 42 48.10 -84.29 REMARK 500 3 LYS A 43 89.89 -153.86 REMARK 500 3 MET A 49 -64.75 -126.18 REMARK 500 3 LYS A 62 -34.00 -26.44 REMARK 500 3 SER A 65 46.14 -87.56 REMARK 500 4 GLU A 14 29.60 -144.89 REMARK 500 4 ASN A 39 84.27 -59.18 REMARK 500 4 LYS A 43 87.26 -153.97 REMARK 500 4 LYS A 62 -46.68 -25.61 REMARK 500 5 GLU A 14 21.31 -140.62 REMARK 500 5 ASP A 40 -73.63 -76.40 REMARK 500 5 GLU A 42 43.52 -77.03 REMARK 500 5 LYS A 43 82.19 -160.11 REMARK 500 5 LYS A 62 -39.77 -26.61 REMARK 500 5 SER A 65 34.82 -73.15 REMARK 500 6 ASP A 40 -80.00 -101.02 REMARK 500 6 LYS A 43 76.36 -160.37 REMARK 500 7 THR A 17 77.79 -105.27 REMARK 500 7 ASP A 40 -86.19 -113.35 REMARK 500 7 LYS A 43 77.42 -159.89 REMARK 500 8 GLU A 14 36.57 -144.55 REMARK 500 8 THR A 17 75.52 -106.79 REMARK 500 8 ASP A 40 -81.27 -93.18 REMARK 500 8 GLU A 42 48.89 -78.80 REMARK 500 8 LYS A 43 86.80 -160.31 REMARK 500 8 LYS A 62 -32.93 -27.69 REMARK 500 8 LYS A 64 -61.48 -109.85 REMARK 500 8 SER A 65 43.36 -87.52 REMARK 500 9 GLU A 14 47.74 -155.78 REMARK 500 9 THR A 17 77.48 -115.68 REMARK 500 9 ASN A 39 92.68 -61.41 REMARK 500 9 GLU A 42 21.51 -72.38 REMARK 500 10 ASN A 39 79.59 -67.78 REMARK 500 10 LYS A 43 84.36 -155.65 REMARK 500 10 LYS A 62 -35.39 -27.74 REMARK 500 10 SER A 65 -63.30 -26.30 REMARK 500 11 ASN A 39 103.61 -48.32 REMARK 500 11 ASP A 40 -81.36 -92.36 REMARK 500 11 LYS A 43 68.42 -159.26 REMARK 500 11 LYS A 62 -1.43 -33.84 REMARK 500 11 SER A 65 34.15 -86.53 REMARK 500 12 ASP A 40 -75.54 -72.83 REMARK 500 12 GLU A 42 36.81 -81.45 REMARK 500 12 PRO A 44 -158.84 -84.25 REMARK 500 12 LEU A 61 46.27 -108.56 REMARK 500 12 LYS A 62 -47.13 -27.06 REMARK 500 13 ASP A 40 -81.04 -79.94 REMARK 500 13 GLU A 42 49.45 -78.01 REMARK 500 13 LYS A 43 89.34 -160.26 REMARK 500 13 LYS A 50 -63.78 -92.32 REMARK 500 13 LYS A 62 -25.10 -26.44 REMARK 500 13 SER A 65 36.12 -82.91 REMARK 500 14 GLU A 14 29.25 -148.22 REMARK 500 14 THR A 17 78.77 -103.00 REMARK 500 14 ASN A 39 85.50 -56.45 REMARK 500 14 ASN A 48 86.01 -17.02 REMARK 500 14 LYS A 62 -36.04 -28.94 REMARK 500 14 SER A 65 -61.44 -28.04 REMARK 500 15 LEU A 15 154.95 -46.32 REMARK 500 15 THR A 17 76.30 -111.79 REMARK 500 15 GLU A 42 43.40 -143.06 REMARK 500 15 LYS A 62 -16.20 -30.73 REMARK 500 15 SER A 65 43.44 -85.78 REMARK 500 16 GLU A 42 46.50 -81.30 REMARK 500 16 LYS A 43 91.00 -160.01 REMARK 500 16 ASN A 48 87.12 5.79 REMARK 500 16 LYS A 62 -50.58 -26.15 REMARK 500 16 SER A 65 -70.48 -26.71 REMARK 500 17 THR A 17 76.49 -106.03 REMARK 500 17 ASN A 39 97.79 -66.36 REMARK 500 17 GLU A 42 48.31 -78.76 REMARK 500 17 LYS A 43 87.35 -160.22 REMARK 500 17 LEU A 61 41.11 -108.69 REMARK 500 17 LYS A 62 -50.05 -27.03 REMARK 500 18 THR A 17 76.09 -109.81 REMARK 500 18 ASN A 39 87.76 -66.44 REMARK 500 18 GLU A 42 42.68 -72.45 REMARK 500 18 LYS A 43 84.89 -160.02 REMARK 500 18 LYS A 64 72.56 -110.87 REMARK 500 19 THR A 17 75.27 -113.41 REMARK 500 19 GLU A 42 20.27 -141.98 REMARK 500 19 ILE A 46 -75.10 -107.11 REMARK 500 19 LYS A 62 3.53 -63.16 REMARK 500 20 THR A 17 78.27 -107.28 REMARK 500 20 ASP A 40 -86.17 -103.08 REMARK 500 20 GLU A 42 45.42 -76.63 REMARK 500 20 LYS A 43 81.01 -160.22 REMARK 500 20 SER A 65 39.36 -86.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 38 ASN A 39 6 145.34 REMARK 500 LYS A 83 TYR A 84 14 -149.61 REMARK 500 ASP A 38 ASN A 39 15 146.50 REMARK 500 ASP A 38 ASN A 39 16 149.51 REMARK 500 ASP A 38 ASN A 39 19 147.59 REMARK 500 LYS A 43 PRO A 44 19 146.12 REMARK 500 LYS A 64 SER A 65 20 -136.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 52 0.08 SIDE_CHAIN REMARK 500 6 TYR A 28 0.08 SIDE_CHAIN REMARK 500 6 TYR A 31 0.08 SIDE_CHAIN REMARK 500 9 ARG A 52 0.11 SIDE_CHAIN REMARK 500 10 PHE A 5 0.10 SIDE_CHAIN REMARK 500 11 TYR A 31 0.07 SIDE_CHAIN REMARK 500 12 TYR A 31 0.07 SIDE_CHAIN REMARK 500 14 TYR A 28 0.09 SIDE_CHAIN REMARK 500 16 PHE A 5 0.08 SIDE_CHAIN REMARK 500 18 ARG A 52 0.08 SIDE_CHAIN REMARK 500 19 TYR A 31 0.07 SIDE_CHAIN REMARK 500 19 ARG A 52 0.10 SIDE_CHAIN REMARK 500 19 TYR A 84 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NTI RELATED DB: PDB REMARK 900 HOMOLOGOUE, BOVINE ACBP REMARK 900 RELATED ID: 1ACA RELATED DB: PDB REMARK 900 BOVINE ACBP COMPLEXED WITH PALMITOYL-COENZYME A REMARK 900 RELATED ID: 2ABD RELATED DB: PDB REMARK 900 BOVINE ACBP, EARLIER RELEASE REMARK 900 RELATED ID: 1HBK RELATED DB: PDB REMARK 900 PLASMODIUM FALCIPARUM ACBP
DBREF 1ST7 A 1 86 UNP P31787 ACBP_YEAST 1 86
SEQRES 1 A 86 VAL SER GLN LEU PHE GLU GLU LYS ALA LYS ALA VAL ASN SEQRES 2 A 86 GLU LEU PRO THR LYS PRO SER THR ASP GLU LEU LEU GLU SEQRES 3 A 86 LEU TYR ALA LEU TYR LYS GLN ALA THR VAL GLY ASP ASN SEQRES 4 A 86 ASP LYS GLU LYS PRO GLY ILE PHE ASN MET LYS ASP ARG SEQRES 5 A 86 TYR LYS TRP GLU ALA TRP GLU ASN LEU LYS GLY LYS SER SEQRES 6 A 86 GLN GLU ASP ALA GLU LYS GLU TYR ILE ALA LEU VAL ASP SEQRES 7 A 86 GLN LEU ILE ALA LYS TYR SER SER
HELIX 1 1 GLN A 3 GLU A 14 1 12 HELIX 2 2 THR A 21 VAL A 36 1 16 HELIX 3 3 MET A 49 ASN A 60 1 12 HELIX 4 4 GLN A 66 TYR A 84 1 19
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000