10 20 30 40 50 60 70 80 1SSL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 24-MAR-04 1SSL
TITLE SOLUTION STRUCTURE OF THE PSI DOMAIN FROM THE MET RECEPTOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATOCYTE GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSI DOMAIN (RESIDUES 519-562); COMPND 5 SYNONYM: MET PROTO-ONCOGENE TYROSINE KINASE, C-MET, HGF COMPND 6 RECEPTOR, HGF-SF RECEPTOR; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI (NOVAGEN); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A
KEYWDS CYSTEINE KNOT, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.KOZLOV,A.PERREAULT,J.D.SCHRAG,M.CYGLER,K.GEHRING,I.EKIEL
REVDAT 2 24-FEB-09 1SSL 1 VERSN REVDAT 1 12-OCT-04 1SSL 0
JRNL AUTH G.KOZLOV,A.PERREAULT,J.D.SCHRAG,M.PARK,M.CYGLER, JRNL AUTH 2 K.GEHRING,I.EKIEL JRNL TITL INSIGHTS INTO FUNCTION OF PSI DOMAINS FROM JRNL TITL 2 STRUCTURE OF THE MET RECEPTOR PSI DOMAIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 321 234 2004 JRNL REFN ISSN 0006-291X JRNL PMID 15358240 JRNL DOI 10.1016/J.BBRC.2004.06.132
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.2 REMARK 3 AUTHORS : CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 492 RESTRAINTS, 407 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 66 DIHEDRAL ANGLE RESTRAINTS, 19 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS.
REMARK 4 REMARK 4 1SSL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021968.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.15M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PSI, 50MM PHOSPHATE REMARK 210 BUFFER, 0.15M NAC, 90%H2O, 10% REMARK 210 D2O; 1MM PSI, 50MM PHOSPHATE REMARK 210 BUFFER, 0.15M NACL, 100%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, XEASY 1.3.13, REMARK 210 CYANA 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR REMARK 210 TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 28 10.46 46.43 REMARK 500 1 ASP A 29 -80.80 169.37 REMARK 500 1 ILE A 46 -48.23 -144.88 REMARK 500 2 PHE A 9 155.47 -44.96 REMARK 500 2 GLN A 10 -87.89 -70.17 REMARK 500 2 GLN A 23 -34.49 -147.09 REMARK 500 2 HIS A 28 17.41 45.49 REMARK 500 2 ASP A 29 -84.72 170.97 REMARK 500 2 ILE A 46 -72.91 -150.50 REMARK 500 3 SER A 2 86.02 -66.04 REMARK 500 3 ALA A 3 -40.67 179.99 REMARK 500 3 GLN A 10 -87.68 -75.00 REMARK 500 3 SER A 11 -145.34 -98.47 REMARK 500 3 VAL A 22 -167.32 -128.89 REMARK 500 3 GLN A 23 -35.87 -143.56 REMARK 500 3 HIS A 28 -1.04 54.75 REMARK 500 3 ASP A 29 -67.76 169.78 REMARK 500 3 SER A 39 -165.30 -128.96 REMARK 500 3 ILE A 46 -42.64 -150.14 REMARK 500 4 ALA A 3 -99.38 -130.77 REMARK 500 4 MET A 4 79.51 -176.21 REMARK 500 4 PHE A 9 161.89 -45.52 REMARK 500 4 GLN A 10 -70.09 -78.57 REMARK 500 4 SER A 11 -169.67 -117.31 REMARK 500 4 ALA A 18 54.63 -144.21 REMARK 500 4 GLN A 23 -31.17 -150.15 REMARK 500 4 HIS A 28 20.59 44.30 REMARK 500 4 ASP A 29 -88.53 172.97 REMARK 500 4 SER A 34 -33.99 -36.64 REMARK 500 4 CYS A 37 56.64 -94.58 REMARK 500 4 ILE A 46 -47.46 -150.18 REMARK 500 5 SER A 2 -175.09 54.21 REMARK 500 5 GLN A 10 -69.57 -92.68 REMARK 500 5 ALA A 18 57.11 -143.79 REMARK 500 5 HIS A 28 20.72 39.74 REMARK 500 5 ASP A 29 -81.84 169.62 REMARK 500 5 ILE A 46 -37.67 -148.55 REMARK 500 6 ALA A 3 107.62 58.35 REMARK 500 6 PHE A 9 -174.64 -51.35 REMARK 500 6 GLN A 10 -69.59 -97.30 REMARK 500 6 SER A 11 -147.65 -119.59 REMARK 500 6 GLN A 23 -47.67 -138.02 REMARK 500 6 HIS A 28 -4.27 59.24 REMARK 500 6 ASP A 29 -64.25 170.46 REMARK 500 6 SER A 34 -28.23 -38.02 REMARK 500 6 GLN A 44 23.45 -145.98 REMARK 500 6 ILE A 46 -36.40 -150.70 REMARK 500 7 SER A 2 -109.83 -116.79 REMARK 500 7 ALA A 3 -64.34 172.43 REMARK 500 7 PHE A 9 -169.03 -52.84 REMARK 500 7 GLN A 10 -72.64 -115.84 REMARK 500 7 ALA A 18 54.45 -143.73 REMARK 500 7 HIS A 28 20.82 40.35 REMARK 500 7 ASP A 29 -87.30 169.84 REMARK 500 7 SER A 34 -30.79 -39.11 REMARK 500 7 CYS A 37 75.83 -107.59 REMARK 500 7 ILE A 46 -37.40 -149.65 REMARK 500 8 ALA A 3 -152.77 -63.03 REMARK 500 8 GLN A 10 -88.52 -80.45 REMARK 500 8 SER A 11 -140.63 -104.50 REMARK 500 8 GLN A 23 -36.41 -146.38 REMARK 500 8 HIS A 28 8.91 46.59 REMARK 500 8 ASP A 29 -66.58 169.52 REMARK 500 8 LEU A 38 -73.98 -66.73 REMARK 500 8 ILE A 46 -41.97 -151.30 REMARK 500 9 SER A 2 27.84 41.53 REMARK 500 9 GLN A 10 -91.88 -78.05 REMARK 500 9 SER A 11 -142.27 -84.33 REMARK 500 9 HIS A 28 37.42 24.77 REMARK 500 9 ASP A 29 -65.15 170.16 REMARK 500 9 GLN A 44 51.71 -144.69 REMARK 500 9 ILE A 46 -70.29 -150.24 REMARK 500 10 ALA A 18 59.40 -143.80 REMARK 500 10 HIS A 28 -11.02 55.51 REMARK 500 10 ASP A 29 -40.59 169.19 REMARK 500 10 SER A 39 -166.82 -75.97 REMARK 500 10 ILE A 46 -43.14 -149.80 REMARK 500 11 SER A 2 72.16 -152.24 REMARK 500 11 PHE A 9 164.00 -48.27 REMARK 500 11 GLN A 10 -79.62 -98.24 REMARK 500 11 ALA A 18 52.57 -144.01 REMARK 500 11 VAL A 22 -156.80 -146.33 REMARK 500 11 GLN A 23 -36.13 -150.08 REMARK 500 11 HIS A 28 -10.39 60.73 REMARK 500 11 ASP A 29 -48.55 172.80 REMARK 500 11 SER A 34 -17.15 -49.96 REMARK 500 11 ILE A 46 -36.54 -150.14 REMARK 500 12 SER A 2 115.03 57.18 REMARK 500 12 ALA A 3 -63.35 66.92 REMARK 500 12 MET A 4 89.11 -47.72 REMARK 500 12 PHE A 9 -177.46 -54.41 REMARK 500 12 GLN A 10 -90.13 -90.75 REMARK 500 12 SER A 11 -150.21 -95.20 REMARK 500 12 HIS A 28 8.27 52.14 REMARK 500 12 ASP A 29 -81.62 170.17 REMARK 500 12 ILE A 46 -39.75 -151.13 REMARK 500 13 SER A 2 -84.61 -107.54 REMARK 500 13 ALA A 3 -160.12 66.43 REMARK 500 13 SER A 11 -167.29 -114.02 REMARK 500 13 ALA A 18 59.99 -143.33 REMARK 500 13 HIS A 28 22.72 34.46 REMARK 500 13 ASP A 29 -73.42 169.34 REMARK 500 13 ILE A 46 -54.26 -150.28 REMARK 500 14 ALA A 3 -82.59 -92.85 REMARK 500 14 MET A 4 55.41 -117.59 REMARK 500 14 ALA A 18 53.26 -143.79 REMARK 500 14 GLN A 23 12.33 -149.91 REMARK 500 14 HIS A 28 -4.40 51.20 REMARK 500 14 ASP A 29 -56.65 169.52 REMARK 500 14 SER A 34 -30.86 -37.74 REMARK 500 14 ILE A 46 -43.58 -150.41 REMARK 500 15 SER A 2 -157.37 -161.33 REMARK 500 15 ALA A 3 87.55 45.20 REMARK 500 15 GLN A 10 -87.42 -70.84 REMARK 500 15 SER A 11 -162.75 -72.39 REMARK 500 15 HIS A 28 -10.60 59.45 REMARK 500 15 ASP A 29 -46.94 171.26 REMARK 500 15 ILE A 46 -37.81 -151.37 REMARK 500 16 SER A 2 -51.76 -127.80 REMARK 500 16 PHE A 9 -161.93 -55.01 REMARK 500 16 GLN A 10 -98.83 -120.72 REMARK 500 16 GLN A 23 -38.19 -150.12 REMARK 500 16 HIS A 28 -4.96 58.61 REMARK 500 16 ASP A 29 -58.43 169.89 REMARK 500 16 ILE A 46 -35.44 -151.78 REMARK 500 17 SER A 2 -56.14 -149.93 REMARK 500 17 ALA A 3 -154.68 -177.95 REMARK 500 17 MET A 4 -78.83 -122.33 REMARK 500 17 GLN A 10 -74.31 -66.99 REMARK 500 17 SER A 11 -162.62 -78.87 REMARK 500 17 HIS A 28 -11.11 63.87 REMARK 500 17 ASP A 29 -51.29 170.36 REMARK 500 17 LEU A 38 -74.12 -50.84 REMARK 500 17 SER A 39 -159.02 -86.42 REMARK 500 17 ILE A 46 -30.18 -150.56 REMARK 500 18 ALA A 3 -157.64 -60.83 REMARK 500 18 MET A 4 -71.17 72.03 REMARK 500 18 GLN A 10 -74.56 -80.58 REMARK 500 18 HIS A 28 20.28 43.25 REMARK 500 18 ASP A 29 -93.19 170.00 REMARK 500 18 SER A 39 -146.83 -71.09 REMARK 500 18 ILE A 46 -45.44 -149.58 REMARK 500 19 SER A 2 -95.66 57.15 REMARK 500 19 ALA A 3 -76.78 -127.58 REMARK 500 19 GLN A 23 -38.40 -149.44 REMARK 500 19 HIS A 28 1.68 54.58 REMARK 500 19 ASP A 29 -69.84 169.80 REMARK 500 19 LEU A 38 -71.41 -50.88 REMARK 500 20 SER A 2 -54.16 -123.03 REMARK 500 20 MET A 4 54.54 -114.90 REMARK 500 20 GLN A 10 -76.49 -71.11 REMARK 500 20 SER A 11 -144.79 -96.56 REMARK 500 20 HIS A 28 -10.54 59.95 REMARK 500 20 ASP A 29 -34.35 169.76 REMARK 500 20 ILE A 46 -56.92 -150.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.32 SIDE_CHAIN REMARK 500 1 ARG A 33 0.31 SIDE_CHAIN REMARK 500 2 ARG A 7 0.23 SIDE_CHAIN REMARK 500 2 ARG A 33 0.31 SIDE_CHAIN REMARK 500 3 ARG A 7 0.21 SIDE_CHAIN REMARK 500 3 ARG A 33 0.12 SIDE_CHAIN REMARK 500 4 ARG A 7 0.30 SIDE_CHAIN REMARK 500 4 ARG A 33 0.32 SIDE_CHAIN REMARK 500 5 ARG A 7 0.26 SIDE_CHAIN REMARK 500 6 ARG A 7 0.24 SIDE_CHAIN REMARK 500 6 ARG A 33 0.32 SIDE_CHAIN REMARK 500 7 ARG A 7 0.32 SIDE_CHAIN REMARK 500 7 ARG A 33 0.32 SIDE_CHAIN REMARK 500 8 ARG A 7 0.31 SIDE_CHAIN REMARK 500 8 ARG A 33 0.31 SIDE_CHAIN REMARK 500 9 ARG A 7 0.26 SIDE_CHAIN REMARK 500 9 ARG A 33 0.31 SIDE_CHAIN REMARK 500 10 ARG A 7 0.25 SIDE_CHAIN REMARK 500 10 ARG A 33 0.31 SIDE_CHAIN REMARK 500 11 ARG A 7 0.08 SIDE_CHAIN REMARK 500 11 ARG A 33 0.28 SIDE_CHAIN REMARK 500 12 ARG A 7 0.23 SIDE_CHAIN REMARK 500 12 ARG A 33 0.31 SIDE_CHAIN REMARK 500 13 ARG A 7 0.16 SIDE_CHAIN REMARK 500 13 ARG A 33 0.24 SIDE_CHAIN REMARK 500 14 ARG A 7 0.25 SIDE_CHAIN REMARK 500 14 ARG A 33 0.32 SIDE_CHAIN REMARK 500 15 ARG A 7 0.31 SIDE_CHAIN REMARK 500 15 ARG A 33 0.28 SIDE_CHAIN REMARK 500 16 ARG A 7 0.26 SIDE_CHAIN REMARK 500 16 ARG A 33 0.32 SIDE_CHAIN REMARK 500 17 ARG A 7 0.27 SIDE_CHAIN REMARK 500 17 ARG A 33 0.30 SIDE_CHAIN REMARK 500 18 ARG A 33 0.32 SIDE_CHAIN REMARK 500 19 ARG A 7 0.30 SIDE_CHAIN REMARK 500 19 ARG A 33 0.25 SIDE_CHAIN REMARK 500 20 ARG A 7 0.29 SIDE_CHAIN REMARK 500 20 ARG A 33 0.31 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1SSL A 5 48 UNP P08581 MET_HUMAN 519 562
SEQADV 1SSL GLY A 1 UNP P08581 CLONING ARTIFACT SEQADV 1SSL SER A 2 UNP P08581 CLONING ARTIFACT SEQADV 1SSL ALA A 3 UNP P08581 CLONING ARTIFACT SEQADV 1SSL MET A 4 UNP P08581 CLONING ARTIFACT
SEQRES 1 A 48 GLY SER ALA MET GLY CYS ARG HIS PHE GLN SER CYS SER SEQRES 2 A 48 GLN CYS LEU SER ALA PRO PRO PHE VAL GLN CYS GLY TRP SEQRES 3 A 48 CYS HIS ASP LYS CYS VAL ARG SER GLU GLU CYS LEU SER SEQRES 4 A 48 GLY THR TRP THR GLN GLN ILE CYS LEU
HELIX 1 1 GLY A 5 PHE A 9 5 5 HELIX 2 2 CYS A 12 ALA A 18 1 7
SHEET 1 A 2 GLY A 25 CYS A 27 0 SHEET 2 A 2 LYS A 30 VAL A 32 -1 O LYS A 30 N CYS A 27
SSBOND 1 CYS A 6 CYS A 24 1555 1555 2.02 SSBOND 2 CYS A 12 CYS A 47 1555 1555 2.02 SSBOND 3 CYS A 15 CYS A 31 1555 1555 2.02 SSBOND 4 CYS A 27 CYS A 37 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000