1SS7 - Header Asymmetric Unit

HEADER DNA 23-MAR-04 1SS7

TITLE COMPENSATING BENDS IN A 16 BASE-PAIR DNA OLIGOMER TITLE 2 CONTAINING A T3A3 SEGMENT

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 D(*CP*GP*AP*GP*GP*TP*TP*TP*AP*AP*AP*CP*CP*TP*CP*G)-3'; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS B-DNA; DOUBLE HELIX; RESIDUAL DIPOLAR COUPLINGS

EXPDTA SOLUTION NMR

NUMMDL 15

AUTHOR K.MCATEER,A.ACEVES-GAONA,R.MICHALCZYK,G.W.BUCHKO,N.G.ISERN, AUTHOR 2 L.A.SILKS,J.H.MILLER,M.A.KENNEDY

REVDAT 2 24-FEB-09 1SS7 1 VERSN REVDAT 1 07-DEC-04 1SS7 0

JRNL AUTH K.MCATEER,A.ACEVES-GAONA,R.MICHALCZYK,G.W.BUCHKO, JRNL AUTH 2 N.G.ISERN,L.A.SILKS,J.H.MILLER,M.A.KENNEDY JRNL TITL COMPENSATING BENDS IN A 16-BASE-PAIR DNA OLIGOMER JRNL TITL 2 CONTAINING A T(3)A(3) SEGMENT: A NMR STUDY OF JRNL TITL 3 GLOBAL DNA CURVATURE JRNL REF BIOPOLYMERS V. 75 497 2004 JRNL REFN ISSN 0006-3525 JRNL PMID 15526287 JRNL DOI 10.1002/BIP.20168

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER, TJANDRA REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 316 NOE, 90 TORSION ANGLE, AND 6 DISTANCE RESTRAINTS REMARK 3 REPRESENTED EACH W-C BASE-PAIR. FOR THE RDC STRUCTURES AN REMARK 3 ADDITIONAL 88 ONE-BOND C-H AND 14 ONE-BOND N-H RESIDUAL REMARK 3 DIPOLAR COUPLING RESTRAINTS WERE USED

REMARK 4 REMARK 4 1SS7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-04. REMARK 100 THE RCSB ID CODE IS RCSB021958.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 400 MM NACL, 40MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM DNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D 13C-1H REMARK 210 CT-TROSY-HSQC, 2D 15N-1H TROSY REMARK 210 -HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, BIRDER 96 REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 45 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HETERONUCLEAR DIPOLAR COUPLINGS WERE MEASURED IN REMARK 210 SAMPLES ALIGNED WITH FILAMENTOUS PF1 BACTERIOPHAGE

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG A 2 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG A 2 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG A 2 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA A 3 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG A 4 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DG A 5 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG A 5 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DT A 6 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT A 7 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DT A 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DA A 9 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DA A 10 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA A 10 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA A 11 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DA A 11 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC A 12 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 13 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DT A 14 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 15 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG A 16 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DG B 18 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DG B 18 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG B 18 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 1 DA B 19 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA B 19 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DG B 20 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG B 20 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DG B 21 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG B 21 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG B 21 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DT B 22 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DT B 23 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DT B 24 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA B 25 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DA B 25 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA B 26 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DA B 26 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 27 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA B 27 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC B 28 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 830 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SSV RELATED DB: PDB REMARK 900 THE SAME SEQUENCE, DIFFERENT NMR SOLUTION

DBREF 1SS7 A 1 16 PDB 1SS7 1SS7 1 16 DBREF 1SS7 B 17 32 PDB 1SS7 1SS7 17 32

SEQRES 1 A 16 DC DG DA DG DG DT DT DT DA DA DA DC DC SEQRES 2 A 16 DT DC DG SEQRES 1 B 16 DC DG DA DG DG DT DT DT DA DA DA DC DC SEQRES 2 B 16 DT DC DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000