10 20 30 40 50 60 70 80 1SS1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 23-MAR-04 1SS1
TITLE STAPHYLOCOCCAL PROTEIN A, B-DOMAIN, Y15W MUTANT, NMR, 25 TITLE 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B DOMAIN; COMPND 5 SYNONYM: IGG BINDING PROTEIN A, STAPHYLOCOCCAL PROTEIN A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET A
KEYWDS IMMUNOGLOBULIN-BINDING PROTEIN, THREE-HELICAL BUNDLE, KEYWDS 2 IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 26
AUTHOR S.SATO,T.L.RELIGA,V.DAGGETT,A.R.FERSHT
REVDAT 3 24-FEB-09 1SS1 1 VERSN REVDAT 2 25-MAY-04 1SS1 1 JRNL REVDAT 1 06-APR-04 1SS1 0
JRNL AUTH S.SATO,T.L.RELIGA,V.DAGGETT,A.R.FERSHT JRNL TITL FROM THE COVER: TESTING PROTEIN-FOLDING JRNL TITL 2 SIMULATIONS BY EXPERIMENT: B DOMAIN OF PROTEIN A. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 6952 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15069202 JRNL DOI 10.1073/PNAS.0401396101
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. T. ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021952.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 MM NACL / 50 MM ACETATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM SAMPLE, U-13C, U-15N; 50 REMARK 210 MM D-ACETATE BUFFER, 100 MM REMARK 210 NACL, PH 5.5; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002.044.17.08, REMARK 210 SPARKY 3.106, CNS 1.1 REMARK 210 METHOD USED : STANDARD ANNEAL.INP CNS SCRIPT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 103 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM,STRUCTURES WITH REMARK 210 ACCEPTABLE COVALENT GEOMETRY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 0 -81.28 -167.02 REMARK 500 1 THR A 1 -79.61 -156.94 REMARK 500 1 ASP A 3 26.78 46.98 REMARK 500 1 ASN A 4 66.46 30.86 REMARK 500 1 LYS A 5 53.82 -65.72 REMARK 500 1 ASN A 7 -179.53 -48.25 REMARK 500 1 LEU A 20 61.10 16.79 REMARK 500 1 PRO A 21 93.10 -61.59 REMARK 500 1 ASN A 22 -0.37 133.75 REMARK 500 1 LYS A 59 159.07 -39.83 REMARK 500 2 SER A 0 164.54 58.31 REMARK 500 2 ALA A 2 -160.72 -18.81 REMARK 500 2 ASP A 3 -70.72 40.58 REMARK 500 2 ASN A 4 -129.59 45.99 REMARK 500 2 ASN A 7 -150.95 -59.27 REMARK 500 2 LEU A 20 64.79 10.59 REMARK 500 2 PRO A 21 98.87 -61.61 REMARK 500 2 ASN A 22 -2.89 110.70 REMARK 500 2 SER A 42 -55.21 -28.56 REMARK 500 2 LYS A 59 -60.16 -98.50 REMARK 500 3 THR A 1 -69.74 109.02 REMARK 500 3 ASP A 3 44.71 -107.38 REMARK 500 3 ASN A 4 -102.13 -31.63 REMARK 500 3 LYS A 5 2.76 58.13 REMARK 500 3 PHE A 6 -111.43 26.60 REMARK 500 3 ASN A 7 -160.62 100.01 REMARK 500 3 LEU A 20 64.10 14.90 REMARK 500 3 PRO A 21 96.91 -57.33 REMARK 500 3 ASN A 22 18.58 116.53 REMARK 500 3 ASN A 24 105.41 -55.28 REMARK 500 3 SER A 42 -36.98 -39.85 REMARK 500 3 ALA A 57 99.59 -38.00 REMARK 500 4 SER A 0 129.54 63.41 REMARK 500 4 THR A 1 -63.96 -164.93 REMARK 500 4 ALA A 2 85.84 64.13 REMARK 500 4 ASP A 3 -71.67 -100.04 REMARK 500 4 LYS A 5 93.50 -177.12 REMARK 500 4 PHE A 6 72.60 -66.94 REMARK 500 4 ASN A 7 -167.87 -55.05 REMARK 500 4 PRO A 21 95.02 -66.71 REMARK 500 4 ASN A 22 12.03 104.70 REMARK 500 4 SER A 42 -76.20 -33.27 REMARK 500 4 PRO A 58 82.38 -61.09 REMARK 500 5 ASP A 3 30.80 -169.59 REMARK 500 5 ASN A 4 -78.31 -45.73 REMARK 500 5 LYS A 5 60.76 93.13 REMARK 500 5 ASN A 7 -165.93 -56.79 REMARK 500 5 LEU A 20 67.35 11.81 REMARK 500 5 PRO A 21 98.05 -56.05 REMARK 500 5 ASN A 22 -6.01 111.12 REMARK 500 5 LYS A 59 55.56 -140.96 REMARK 500 6 SER A 0 -167.49 -63.06 REMARK 500 6 THR A 1 -76.21 -75.51 REMARK 500 6 ALA A 2 82.28 156.43 REMARK 500 6 ASN A 4 -179.44 -38.46 REMARK 500 6 PHE A 6 77.78 -44.22 REMARK 500 6 ASN A 7 178.02 -51.41 REMARK 500 6 LEU A 20 58.13 12.97 REMARK 500 6 PRO A 21 92.47 -44.36 REMARK 500 6 ASN A 22 -58.69 128.84 REMARK 500 6 LEU A 23 144.46 -32.31 REMARK 500 6 SER A 42 -34.49 -36.76 REMARK 500 6 PRO A 58 -105.63 -81.05 REMARK 500 6 LYS A 59 97.59 44.29 REMARK 500 7 SER A 0 -73.58 66.19 REMARK 500 7 ALA A 2 -155.13 -100.02 REMARK 500 7 ASP A 3 42.95 113.48 REMARK 500 7 LYS A 5 -127.12 -117.17 REMARK 500 7 PHE A 6 80.82 -157.79 REMARK 500 7 ASN A 7 -136.96 -55.88 REMARK 500 7 LEU A 20 58.83 14.19 REMARK 500 7 PRO A 21 91.73 -66.42 REMARK 500 7 ASN A 22 11.95 136.24 REMARK 500 7 ASN A 24 107.81 -57.33 REMARK 500 7 LYS A 59 -22.52 117.73 REMARK 500 8 THR A 1 77.08 -159.36 REMARK 500 8 ALA A 2 -123.20 145.90 REMARK 500 8 LYS A 5 25.41 -153.58 REMARK 500 8 PHE A 6 66.45 15.90 REMARK 500 8 ASN A 7 -167.91 -54.96 REMARK 500 8 LEU A 20 71.27 4.93 REMARK 500 8 PRO A 21 99.43 -55.31 REMARK 500 8 ASN A 22 -23.32 105.99 REMARK 500 8 LYS A 59 71.31 69.58 REMARK 500 9 SER A 0 66.99 60.09 REMARK 500 9 LYS A 5 -81.42 -51.62 REMARK 500 9 ASN A 7 -171.61 -51.81 REMARK 500 9 LEU A 20 53.93 24.66 REMARK 500 9 PRO A 21 88.92 -39.29 REMARK 500 9 ASN A 22 -63.60 132.46 REMARK 500 9 LEU A 23 154.77 -35.83 REMARK 500 9 SER A 42 -33.13 -39.73 REMARK 500 9 ALA A 57 -155.91 24.83 REMARK 500 10 ALA A 2 -152.97 161.60 REMARK 500 10 ASP A 3 -34.87 -132.59 REMARK 500 10 ASN A 4 -114.67 -129.30 REMARK 500 10 LYS A 5 -78.62 153.02 REMARK 500 10 PHE A 6 57.00 37.70 REMARK 500 10 ASN A 7 -124.11 -62.81 REMARK 500 10 LEU A 20 61.91 10.53 REMARK 500 10 PRO A 21 93.31 -62.39 REMARK 500 10 ASN A 22 22.63 122.68 REMARK 500 10 ASN A 24 105.79 -59.08 REMARK 500 11 SER A 0 -72.95 -97.55 REMARK 500 11 ALA A 2 -173.91 -52.56 REMARK 500 11 LYS A 5 -72.71 -78.70 REMARK 500 11 PHE A 6 90.80 18.74 REMARK 500 11 ASN A 7 -120.18 -139.19 REMARK 500 11 LEU A 20 59.32 22.03 REMARK 500 11 PRO A 21 93.86 -59.57 REMARK 500 11 ASN A 22 -0.56 130.56 REMARK 500 11 SER A 42 -65.19 -25.67 REMARK 500 11 ALA A 57 -160.63 17.53 REMARK 500 11 LYS A 59 -61.46 -122.56 REMARK 500 12 ALA A 2 -11.35 -45.38 REMARK 500 12 ASP A 3 -54.81 82.47 REMARK 500 12 LYS A 5 -4.61 -59.71 REMARK 500 12 ASN A 7 -113.26 -67.96 REMARK 500 12 LEU A 20 60.61 12.50 REMARK 500 12 PRO A 21 93.79 -64.71 REMARK 500 12 ASN A 22 -4.24 133.60 REMARK 500 12 SER A 42 -69.21 -26.70 REMARK 500 12 ALA A 57 103.86 -48.60 REMARK 500 12 PRO A 58 34.37 -88.63 REMARK 500 13 ALA A 2 78.05 56.87 REMARK 500 13 ASN A 4 85.52 163.25 REMARK 500 13 PHE A 6 -80.90 22.82 REMARK 500 13 ASN A 7 -158.86 75.98 REMARK 500 13 LEU A 20 58.62 25.50 REMARK 500 13 PRO A 21 90.56 -63.40 REMARK 500 13 ASN A 22 -2.12 148.57 REMARK 500 13 ALA A 57 108.54 -26.47 REMARK 500 13 LYS A 59 -144.18 -103.76 REMARK 500 14 THR A 1 0.14 -166.72 REMARK 500 14 ASN A 4 -83.90 -48.67 REMARK 500 14 LYS A 5 68.91 39.59 REMARK 500 14 PHE A 6 77.54 -26.27 REMARK 500 14 ASN A 7 -86.20 -90.76 REMARK 500 14 LEU A 20 73.20 -3.14 REMARK 500 14 ASN A 22 -25.89 118.01 REMARK 500 14 ALA A 57 -168.10 -101.17 REMARK 500 14 PRO A 58 62.62 -69.02 REMARK 500 14 LYS A 59 101.67 42.31 REMARK 500 15 SER A 0 -94.45 -87.87 REMARK 500 15 ALA A 2 96.21 -52.53 REMARK 500 15 ASP A 3 -47.42 43.60 REMARK 500 15 ASN A 4 78.14 -17.42 REMARK 500 15 LYS A 5 74.65 -157.09 REMARK 500 15 ASN A 7 -101.21 -79.32 REMARK 500 15 LEU A 20 65.53 4.65 REMARK 500 15 PRO A 21 95.16 -64.03 REMARK 500 15 ASN A 22 3.68 130.74 REMARK 500 15 PRO A 58 75.36 -65.61 REMARK 500 15 LYS A 59 59.37 176.82 REMARK 500 16 ALA A 2 -117.41 35.28 REMARK 500 16 ASP A 3 -29.61 176.52 REMARK 500 16 ASN A 4 74.09 59.78 REMARK 500 16 LYS A 5 30.06 -69.03 REMARK 500 16 ASN A 7 -169.88 -125.80 REMARK 500 16 LEU A 20 56.91 19.16 REMARK 500 16 PRO A 21 93.73 -61.92 REMARK 500 16 ASN A 22 8.87 132.68 REMARK 500 16 ASN A 24 109.24 -56.42 REMARK 500 16 ALA A 57 108.71 -58.78 REMARK 500 16 LYS A 59 49.27 -163.01 REMARK 500 17 SER A 0 53.59 -96.70 REMARK 500 17 ASP A 3 -71.46 -47.22 REMARK 500 17 ASN A 4 89.48 -35.91 REMARK 500 17 ASN A 7 -132.33 54.06 REMARK 500 17 LEU A 20 93.95 -69.86 REMARK 500 17 ASN A 22 -4.42 137.32 REMARK 500 17 GLN A 56 -115.28 -90.34 REMARK 500 17 ALA A 57 72.10 -179.69 REMARK 500 17 PRO A 58 128.71 -33.80 REMARK 500 17 LYS A 59 73.53 54.77 REMARK 500 18 ASN A 4 -34.32 -36.56 REMARK 500 18 LYS A 5 -38.59 117.22 REMARK 500 18 PHE A 6 135.93 63.06 REMARK 500 18 LEU A 20 68.18 7.67 REMARK 500 18 PRO A 21 94.79 -63.44 REMARK 500 18 ASN A 22 -6.75 129.23 REMARK 500 18 LYS A 59 -168.85 170.78 REMARK 500 19 ALA A 2 -160.76 166.40 REMARK 500 19 ASP A 3 77.20 39.66 REMARK 500 19 ASN A 4 46.54 16.32 REMARK 500 19 ASN A 7 -160.69 -124.83 REMARK 500 19 LEU A 20 59.97 3.82 REMARK 500 19 PRO A 21 95.47 -51.40 REMARK 500 19 ASN A 22 -56.29 129.89 REMARK 500 19 LEU A 23 146.03 -35.10 REMARK 500 19 SER A 42 -39.79 -38.20 REMARK 500 19 PRO A 58 68.29 -66.94 REMARK 500 19 LYS A 59 -152.02 159.94 REMARK 500 20 SER A 0 -90.60 -87.45 REMARK 500 20 ALA A 2 -4.80 -179.08 REMARK 500 20 ASP A 3 -11.79 154.55 REMARK 500 20 ASN A 4 -61.34 177.23 REMARK 500 20 LYS A 5 -51.76 74.13 REMARK 500 20 PHE A 6 66.44 65.09 REMARK 500 20 ASN A 7 -178.45 -48.97 REMARK 500 20 LEU A 20 61.20 22.25 REMARK 500 20 PRO A 21 96.28 -59.49 REMARK 500 20 ASN A 22 -5.00 129.59 REMARK 500 20 ALA A 57 155.31 -27.04 REMARK 500 20 PRO A 58 -89.12 -86.80 REMARK 500 20 LYS A 59 -151.61 43.52 REMARK 500 21 SER A 0 -62.44 -124.22 REMARK 500 21 ASP A 3 -55.19 161.38 REMARK 500 21 ASN A 4 177.56 173.21 REMARK 500 21 ASN A 7 -106.26 -125.83 REMARK 500 21 LEU A 20 53.23 17.58 REMARK 500 21 PRO A 21 95.13 -63.42 REMARK 500 21 ASN A 22 -53.20 148.34 REMARK 500 21 SER A 40 11.60 -69.52 REMARK 500 21 PRO A 58 49.74 -86.65 REMARK 500 21 LYS A 59 -79.35 -43.95 REMARK 500 22 SER A 0 -59.76 75.15 REMARK 500 22 THR A 1 -78.60 -174.03 REMARK 500 22 ALA A 2 -88.09 -75.38 REMARK 500 22 ASP A 3 -4.25 89.96 REMARK 500 22 LYS A 5 -72.90 -45.84 REMARK 500 22 ASN A 7 177.42 -42.57 REMARK 500 22 LEU A 20 63.04 10.95 REMARK 500 22 PRO A 21 94.48 -60.03 REMARK 500 22 ASN A 22 14.45 128.48 REMARK 500 22 SER A 42 -36.09 -36.97 REMARK 500 22 ALA A 57 101.93 -39.35 REMARK 500 23 ALA A 2 -151.21 -106.18 REMARK 500 23 ASP A 3 -32.07 71.76 REMARK 500 23 LYS A 5 63.36 -164.88 REMARK 500 23 ASN A 7 -163.22 -56.78 REMARK 500 23 LEU A 20 70.78 -2.79 REMARK 500 23 PRO A 21 98.26 -62.63 REMARK 500 23 ASN A 22 -12.65 131.52 REMARK 500 23 PRO A 58 107.67 -56.68 REMARK 500 24 SER A 0 44.26 -157.13 REMARK 500 24 THR A 1 -75.56 -64.15 REMARK 500 24 ALA A 2 -112.98 -175.59 REMARK 500 24 ASN A 4 -140.23 -31.57 REMARK 500 24 PHE A 6 85.08 -43.02 REMARK 500 24 ASN A 7 -171.40 -58.77 REMARK 500 24 LEU A 20 57.52 16.60 REMARK 500 24 PRO A 21 90.98 -43.47 REMARK 500 24 ASN A 22 -59.51 132.39 REMARK 500 24 LEU A 23 154.72 -37.57 REMARK 500 24 SER A 42 -39.79 -38.76 REMARK 500 24 ALA A 57 102.50 -30.01 REMARK 500 24 LYS A 59 -167.31 165.33 REMARK 500 25 ALA A 2 75.56 -62.77 REMARK 500 25 ASN A 4 -13.73 -46.17 REMARK 500 25 LYS A 5 -22.92 64.35 REMARK 500 25 PHE A 6 78.64 -24.86 REMARK 500 25 ASN A 7 -96.14 -88.32 REMARK 500 25 LEU A 20 69.44 15.31 REMARK 500 25 PRO A 21 100.06 -54.69 REMARK 500 25 ASN A 22 -38.60 119.72 REMARK 500 26 SER A 0 -169.92 52.39 REMARK 500 26 ASP A 3 -20.88 120.32 REMARK 500 26 ASN A 4 -113.21 138.00 REMARK 500 26 LYS A 5 102.52 56.59 REMARK 500 26 ASN A 7 -84.53 -163.62 REMARK 500 26 LEU A 20 65.94 2.83 REMARK 500 26 PRO A 21 96.49 -64.00 REMARK 500 26 ASN A 22 13.41 125.87 REMARK 500 26 GLN A 56 -116.96 -101.67 REMARK 500 26 ALA A 57 83.87 6.58 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1SS1 A 2 60 UNP P38507 SPA2_STAAU 212 270
SEQADV 1SS1 GLY A -1 UNP P38507 CLONING ARTIFACT SEQADV 1SS1 SER A 0 UNP P38507 CLONING ARTIFACT SEQADV 1SS1 THR A 1 UNP P38507 CLONING ARTIFACT SEQADV 1SS1 TRP A 15 UNP P38507 TYR 225 ENGINEERED
SEQRES 1 A 62 GLY SER THR ALA ASP ASN LYS PHE ASN LYS GLU GLN GLN SEQRES 2 A 62 ASN ALA PHE TRP GLU ILE LEU HIS LEU PRO ASN LEU ASN SEQRES 3 A 62 GLU GLU GLN ARG ASN GLY PHE ILE GLN SER LEU LYS ASP SEQRES 4 A 62 ASP PRO SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS SEQRES 5 A 62 LYS LEU ASN ASP ALA GLN ALA PRO LYS ALA
HELIX 1 1 ASN A 7 LEU A 20 1 14 HELIX 2 2 ASN A 24 ASP A 38 1 15 HELIX 3 3 GLN A 41 ALA A 57 1 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000