10 20 30 40 50 60 70 80 1SRK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 22-MAR-04 1SRK
TITLE SOLUTION STRUCTURE OF THE THIRD ZINC FINGER DOMAIN OF FOG-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN ZFPM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 328-360; COMPND 5 SYNONYM: ZINC FINGER PROTEIN MULTITYPE 1, FRIEND OF GATA COMPND 6 PROTEIN 1, FRIEND OF GATA-1, FOG-1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZFPM1, FOG1, FOG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T
KEYWDS CLASSICAL ZINC FINGER, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.J.Y.SIMPSON,S.H.Y.LEE,N.BARTLE,J.M.MATTHEWS,J.P.MACKAY, AUTHOR 2 M.CROSSLEY
REVDAT 2 24-FEB-09 1SRK 1 VERSN REVDAT 1 21-SEP-04 1SRK 0
JRNL AUTH R.J.Y.SIMPSON,S.H.Y.LEE,N.BARTLE,E.Y.SUM, JRNL AUTH 2 J.E.VISVADER,J.M.MATTHEWS,J.P.MACKAY,M.CROSSLEY JRNL TITL A CLASSIC ZINC FINGER FROM FRIEND OF GATA MEDIATES JRNL TITL 2 AN INTERACTION WITH THE COILED-COIL OF JRNL TITL 3 TRANSFORMING ACIDIC COILED-COIL 3. JRNL REF J.BIOL.CHEM. V. 279 39789 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15234987 JRNL DOI 10.1074/JBC.M404130200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES WERE BASED ON 859 REMARK 3 UNAMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS, 20 AMBIGUOUS REMARK 3 CONSTRAINTS AND 31 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1SRK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021946.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 275 REMARK 210 PH : 5.6; 5.6 REMARK 210 IONIC STRENGTH : 0 MM; 0 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.27 MM FOG-F3, 2MM TCEP, 1 REMARK 210 MM ZNSO4, 95% H2O, 5% D2O; REMARK 210 0.245 MM 15N-FOG-F3, 2MM TCEP, REMARK 210 1 MM ZNSO4, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY 1.3.13, REMARK 210 ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR REMARK 210 NMR SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -42.07 -174.81 REMARK 500 1 SER A 3 -152.93 -162.38 REMARK 500 1 PRO A 7 28.17 -72.29 REMARK 500 1 PHE A 8 53.18 -94.29 REMARK 500 1 CYS A 13 -128.52 -95.16 REMARK 500 1 LEU A 14 36.17 -153.66 REMARK 500 1 HIS A 30 42.20 -77.74 REMARK 500 1 THR A 31 -45.18 175.94 REMARK 500 2 LYS A 5 133.71 -173.30 REMARK 500 2 PRO A 7 4.30 -60.10 REMARK 500 2 CYS A 13 -123.38 -101.70 REMARK 500 2 LEU A 14 36.20 -157.26 REMARK 500 2 THR A 31 31.78 -176.39 REMARK 500 2 ASP A 32 130.61 -179.29 REMARK 500 3 LYS A 5 -145.85 -72.04 REMARK 500 3 ARG A 6 65.74 -159.07 REMARK 500 3 CYS A 13 -124.38 -96.24 REMARK 500 3 LEU A 14 37.46 -159.96 REMARK 500 3 HIS A 30 25.12 -79.82 REMARK 500 3 THR A 31 34.97 -179.95 REMARK 500 3 LEU A 34 43.62 -79.67 REMARK 500 4 SER A 3 -139.93 61.51 REMARK 500 4 CYS A 13 -122.53 -102.82 REMARK 500 4 LEU A 14 34.92 -159.54 REMARK 500 4 HIS A 30 43.10 -78.26 REMARK 500 4 THR A 31 -45.76 -177.93 REMARK 500 4 LEU A 34 -42.98 -161.08 REMARK 500 5 SER A 3 134.29 73.24 REMARK 500 5 PRO A 7 13.03 -65.87 REMARK 500 5 PHE A 8 48.31 -85.02 REMARK 500 5 CYS A 13 -124.89 -96.42 REMARK 500 5 LEU A 14 39.66 -160.09 REMARK 500 5 HIS A 30 47.56 -77.16 REMARK 500 5 THR A 31 -39.86 179.06 REMARK 500 5 LEU A 34 54.98 -151.78 REMARK 500 6 SER A 3 139.71 71.81 REMARK 500 6 CYS A 13 -121.87 -100.20 REMARK 500 6 LEU A 14 34.03 -159.84 REMARK 500 6 HIS A 30 34.30 -77.74 REMARK 500 6 THR A 31 -45.11 -162.28 REMARK 500 6 LEU A 34 44.93 -144.09 REMARK 500 7 SER A 3 136.35 -174.35 REMARK 500 7 ARG A 6 33.19 -98.78 REMARK 500 7 CYS A 13 -123.92 -104.52 REMARK 500 7 LEU A 14 39.48 -160.02 REMARK 500 7 THR A 31 32.29 -176.09 REMARK 500 7 ASP A 32 132.60 -170.92 REMARK 500 8 PRO A 7 24.83 -71.42 REMARK 500 8 PHE A 8 49.66 -91.50 REMARK 500 8 CYS A 13 -124.54 -99.15 REMARK 500 8 LEU A 14 36.09 -159.13 REMARK 500 8 THR A 31 42.64 -87.21 REMARK 500 8 ASP A 32 -98.75 -173.25 REMARK 500 8 LEU A 34 -43.31 -157.80 REMARK 500 9 SER A 2 50.50 -166.22 REMARK 500 9 PRO A 7 17.33 -63.24 REMARK 500 9 PHE A 8 49.50 -86.01 REMARK 500 9 CYS A 13 -121.97 -104.07 REMARK 500 9 LEU A 14 37.02 -160.71 REMARK 500 9 LEU A 34 46.77 -79.00 REMARK 500 10 PRO A 7 25.97 -72.19 REMARK 500 10 PHE A 8 49.30 -91.37 REMARK 500 10 CYS A 13 -122.90 -103.67 REMARK 500 10 LEU A 14 36.35 -160.38 REMARK 500 10 HIS A 30 25.17 -79.65 REMARK 500 10 THR A 31 35.01 -173.75 REMARK 500 10 ASP A 32 -50.05 -168.13 REMARK 500 10 THR A 33 50.49 -90.24 REMARK 500 11 SER A 2 -126.41 -177.56 REMARK 500 11 SER A 3 127.91 68.11 REMARK 500 11 ARG A 6 59.67 -105.80 REMARK 500 11 CYS A 13 -123.61 -99.23 REMARK 500 11 LEU A 14 35.26 -157.64 REMARK 500 11 HIS A 30 42.48 -79.70 REMARK 500 11 THR A 31 -47.65 -175.30 REMARK 500 11 ASP A 32 -145.89 -83.28 REMARK 500 11 LEU A 34 47.10 -77.92 REMARK 500 12 SER A 2 -134.60 -76.22 REMARK 500 12 ARG A 6 63.58 -115.08 REMARK 500 12 CYS A 13 -124.63 -99.33 REMARK 500 12 LEU A 14 36.48 -158.10 REMARK 500 12 THR A 31 40.34 -85.92 REMARK 500 12 ASP A 32 -69.02 -171.17 REMARK 500 12 THR A 33 39.20 -84.07 REMARK 500 12 LEU A 34 43.10 -141.27 REMARK 500 13 ARG A 6 42.89 -102.76 REMARK 500 13 CYS A 13 -124.85 -98.60 REMARK 500 13 LEU A 14 36.92 -157.52 REMARK 500 14 LYS A 5 145.97 69.07 REMARK 500 14 ARG A 6 51.79 -104.60 REMARK 500 14 CYS A 13 -123.92 -94.65 REMARK 500 14 LEU A 14 35.32 -159.01 REMARK 500 14 HIS A 30 44.79 -78.90 REMARK 500 14 THR A 31 -46.91 -173.92 REMARK 500 15 SER A 3 129.04 65.58 REMARK 500 15 LYS A 5 172.36 66.98 REMARK 500 15 CYS A 13 -125.27 -96.82 REMARK 500 15 LEU A 14 36.53 -160.27 REMARK 500 15 HIS A 30 37.00 -78.60 REMARK 500 15 THR A 31 -45.08 177.43 REMARK 500 15 LEU A 34 46.59 -79.38 REMARK 500 16 SER A 2 -135.66 -170.00 REMARK 500 16 PRO A 7 27.50 -71.52 REMARK 500 16 PHE A 8 44.28 -94.97 REMARK 500 16 CYS A 13 -125.13 -95.07 REMARK 500 16 LEU A 14 34.18 -159.57 REMARK 500 16 HIS A 30 40.83 -78.44 REMARK 500 16 THR A 31 -40.61 -178.10 REMARK 500 16 ASP A 32 -100.12 -72.43 REMARK 500 17 SER A 2 45.63 -157.80 REMARK 500 17 LYS A 5 134.74 73.11 REMARK 500 17 ARG A 6 68.74 -109.76 REMARK 500 17 CYS A 13 -123.92 -92.31 REMARK 500 17 LEU A 14 33.87 -158.22 REMARK 500 17 LEU A 34 38.76 -87.22 REMARK 500 18 LYS A 5 -171.05 -173.80 REMARK 500 18 PRO A 7 22.82 -68.55 REMARK 500 18 PHE A 8 50.96 -91.30 REMARK 500 18 CYS A 13 -124.14 -95.39 REMARK 500 18 LEU A 14 40.61 -160.44 REMARK 500 18 ASP A 32 -51.24 65.01 REMARK 500 18 LEU A 34 -41.75 -147.19 REMARK 500 19 SER A 3 -143.09 -159.67 REMARK 500 19 CYS A 13 -124.78 -100.78 REMARK 500 19 LEU A 14 37.38 -155.05 REMARK 500 19 HIS A 30 42.21 -77.98 REMARK 500 19 THR A 31 -50.05 179.55 REMARK 500 19 ASP A 32 32.23 -91.86 REMARK 500 19 THR A 33 36.65 -161.13 REMARK 500 19 LEU A 34 47.93 -159.62 REMARK 500 20 LYS A 5 145.29 -170.34 REMARK 500 20 PRO A 7 7.22 -67.50 REMARK 500 20 CYS A 13 -124.11 -99.88 REMARK 500 20 LEU A 14 37.94 -157.39 REMARK 500 20 HIS A 30 31.18 -79.79 REMARK 500 20 THR A 31 30.83 -171.37 REMARK 500 20 ASP A 32 -133.58 -172.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 36 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 HIS A 26 NE2 112.7 REMARK 620 3 CYS A 10 SG 105.6 107.9 REMARK 620 4 HIS A 30 NE2 112.4 108.8 109.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 36
DBREF 1SRK A 3 35 UNP O35615 FOG1_MOUSE 328 360
SEQADV 1SRK GLY A 1 UNP O35615 EXPRESSION TAG SEQADV 1SRK SER A 2 UNP O35615 EXPRESSION TAG SEQADV 1SRK LYS A 5 UNP O35615 GLU 330 ENGINEERED SEQADV 1SRK ARG A 11 UNP O35615 LEU 336 ENGINEERED SEQADV 1SRK ALA A 24 UNP O35615 GLU 349 ENGINEERED
SEQRES 1 A 35 GLY SER SER GLY LYS ARG PRO PHE VAL CYS ARG ILE CYS SEQRES 2 A 35 LEU SER ALA PHE THR THR LYS ALA ASN CYS ALA ARG HIS SEQRES 3 A 35 LEU LYS VAL HIS THR ASP THR LEU SER
HET ZN A 36 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 THR A 19 LYS A 28 1 10 HELIX 2 2 VAL A 29 THR A 31 5 3
SHEET 1 A 2 PHE A 8 VAL A 9 0 SHEET 2 A 2 ALA A 16 PHE A 17 -1 O PHE A 17 N PHE A 8
LINK ZN ZN A 36 SG CYS A 13 1555 1555 2.31 LINK ZN ZN A 36 NE2 HIS A 26 1555 1555 1.95 LINK ZN ZN A 36 SG CYS A 10 1555 1555 2.24 LINK ZN ZN A 36 NE2 HIS A 30 1555 1555 1.95
SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 26 HIS A 30
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000