10 20 30 40 50 60 70 80 1SP0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 16-MAR-04 1SP0
TITLE SOLUTION STRUCTURE OF APOCOX11
CAVEAT 1SP0 CHIRALITY ERROR AT RESIDUE 102
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL SOLUBLE DOMAIN; COMPND 5 SYNONYM: COX11; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 382; SOURCE 4 GENE: CTAG, R00908, SMC00012; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A
KEYWDS IMMUNOGLOBULIN-LIKE FOLD, COPPER PROTEIN, CYTOCHROME C KEYWDS 2 OXIDASE ASSEMBLY, METAL TRANSPORT
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR L.BANCI,I.BERTINI,F.CANTINI,S.CIOFI-BAFFONI,L.GONNELLI, AUTHOR 2 S.MANGANI
REVDAT 3 24-FEB-09 1SP0 1 VERSN REVDAT 2 17-AUG-04 1SP0 1 JRNL REVDAT 1 10-AUG-04 1SP0 0
JRNL AUTH L.BANCI,I.BERTINI,F.CANTINI,S.CIOFI-BAFFONI, JRNL AUTH 2 L.GONNELLI,S.MANGANI JRNL TITL SOLUTION STRUCTURE OF COX11, A NOVEL TYPE OF JRNL TITL 2 {BETA}-IMMUNOGLOBULIN-LIKE FOLD INVOLVED IN CUB JRNL TITL 3 SITE FORMATION OF CYTOCHROME C OXIDASE. JRNL REF J.BIOL.CHEM. V. 279 34833 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15181013 JRNL DOI 10.1074/JBC.M403655200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 5.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE BASED ON A TOTAL REMARK 3 OF 2867 MEANINGFUL DISTANCE CONSTRAINTS, 130 DIHEDRAL ANGLE REMARK 3 RESTRAINTS
REMARK 4 REMARK 4 1SP0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021888.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM APOCOX11 U-15N; 5MM REMARK 210 DTT; 20 MM PHOSPHATE BUFFER REMARK 210 NA; 1 MM APOCOX11 U-95% 13C,U- REMARK 210 98% 15N; 5 MM DTT; 20 MM REMARK 210 PHOSPHATE BUFFER NA; 2 MM REMARK 210 UNLABELLED APOCOX11; 5 MM DTT; REMARK 210 20 MM PHOSPHATE BUFFER NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNHA, 3D_13C- REMARK 210 SEPARATED_NOESY, 13C (H)CCH- REMARK 210 TOCSY, CBCA(CO)NH, CBCANH, REMARK 210 HNCO, HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, XEASY 1.3, DYANA REMARK 210 1.5, CYANA 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 COUPLED WITH SIMULATED REMARK 210 ANNEALING FOLLOWED BY REMARK 210 RESTRAINED ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D HETERONUCLEAR REMARK 210 TECHNIQUES. THE 500 MHZ SPECTROMETER WAS EQUIPPED WITH A REMARK 210 TRIPLE RESONANCE CRYOPROBE. ALL THE TRIPLE RESONANCE (TXI 5- REMARK 210 MM) PROBES USED WERE EQUIPPED WITH PULSED FIELD GRADIENTS REMARK 210 ALONG THE Z-AXIS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 LEU A 4 REMARK 465 TYR A 5 REMARK 465 ASP A 6 REMARK 465 MET A 7 REMARK 465 PHE A 8 REMARK 465 CYS A 9 REMARK 465 ARG A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 TYR A 14 REMARK 465 ASN A 15 REMARK 465 GLY A 16 REMARK 465 THR A 17 REMARK 465 THR A 18 REMARK 465 GLN A 19 REMARK 465 ARG A 20 REMARK 465 PRO A 152 REMARK 465 VAL A 153 REMARK 465 ALA A 154 REMARK 465 GLN A 155 REMARK 465 VAL A 156 REMARK 465 LYS A 157 REMARK 465 ALA A 158 REMARK 465 LYS A 159 REMARK 465 ALA A 160 REMARK 465 GLU A 161 REMARK 465 ASN A 162 REMARK 465 LYS A 163 REMARK 465 LEU A 164
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 23 159.29 173.45 REMARK 500 ALA A 24 24.03 -157.22 REMARK 500 ILE A 28 81.21 -69.28 REMARK 500 GLU A 31 102.40 -51.45 REMARK 500 PRO A 46 44.97 -81.14 REMARK 500 ILE A 60 70.09 1.20 REMARK 500 GLU A 62 104.25 -46.05 REMARK 500 THR A 63 92.89 -68.30 REMARK 500 GLN A 81 49.17 -176.72 REMARK 500 THR A 87 147.95 -174.10 REMARK 500 MET A 89 -74.24 174.51 REMARK 500 ALA A 91 -114.24 -79.73 REMARK 500 GLN A 99 -157.08 -81.58 REMARK 500 PHE A 101 -35.99 73.21 REMARK 500 CYS A 102 16.43 -60.46 REMARK 500 PHE A 103 86.10 -65.93 REMARK 500 THR A 106 -73.60 52.42 REMARK 500 LYS A 128 -66.87 -136.72 REMARK 500 GLN A 133 49.96 24.35 REMARK 500 LYS A 136 68.62 -157.05 REMARK 500 PHE A 144 83.50 -68.26 REMARK 500 TYR A 145 40.99 -144.85 REMARK 500 PRO A 146 -84.69 -73.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 101 CYS A 102 -139.16 REMARK 500 LYS A 136 THR A 137 148.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 94 0.12 SIDE_CHAIN REMARK 500 PHE A 120 0.08 SIDE_CHAIN REMARK 500 TYR A 142 0.21 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS A 102 129.2 ALPHA-CARBON REMARK 500 REMARK 500 REMARK: NULL
DBREF 1SP0 A 2 164 UNP Q92RG6 COXZ_RHIME 36 198
SEQADV 1SP0 MET A 1 UNP Q92RG6 INITIATING METHIONINE
SEQRES 1 A 164 MET VAL PRO LEU TYR ASP MET PHE CYS ARG VAL THR GLY SEQRES 2 A 164 TYR ASN GLY THR THR GLN ARG VAL GLU GLN ALA SER ASP SEQRES 3 A 164 LEU ILE LEU ASP GLU LYS ILE LYS VAL THR PHE ASP ALA SEQRES 4 A 164 ASN VAL ALA ALA GLY LEU PRO TRP GLU PHE VAL PRO VAL SEQRES 5 A 164 GLN ARG ASP ILE ASP VAL ARG ILE GLY GLU THR VAL GLN SEQRES 6 A 164 ILE MET TYR ARG ALA LYS ASN LEU ALA SER THR PRO THR SEQRES 7 A 164 THR GLY GLN ALA THR PHE ASN VAL THR PRO MET ALA ALA SEQRES 8 A 164 GLY ALA TYR PHE ASN LYS VAL GLN CYS PHE CYS PHE THR SEQRES 9 A 164 GLU THR THR LEU GLU PRO GLY GLU GLU MET GLU MET PRO SEQRES 10 A 164 VAL VAL PHE PHE VAL ASP PRO GLU ILE VAL LYS PRO VAL SEQRES 11 A 164 GLU THR GLN GLY ILE LYS THR LEU THR LEU SER TYR THR SEQRES 12 A 164 PHE TYR PRO ARG GLU PRO SER LYS PRO VAL ALA GLN VAL SEQRES 13 A 164 LYS ALA LYS ALA GLU ASN LYS LEU
HELIX 1 1 PRO A 124 LYS A 128 5 5
SHEET 1 A 4 ASP A 55 ARG A 59 0 SHEET 2 A 4 LYS A 32 VAL A 41 -1 N VAL A 35 O ILE A 56 SHEET 3 A 4 LEU A 138 PHE A 144 1 O TYR A 142 N ASP A 38 SHEET 4 A 4 THR A 83 ASN A 85 -1 N THR A 83 O THR A 143 SHEET 1 B 4 TRP A 47 VAL A 50 0 SHEET 2 B 4 VAL A 64 ASN A 72 -1 O LYS A 71 N GLU A 48 SHEET 3 B 4 GLU A 113 VAL A 122 -1 O MET A 114 N ALA A 70 SHEET 4 B 4 PHE A 95 LYS A 97 -1 N ASN A 96 O PHE A 121 SHEET 1 C 2 THR A 78 THR A 79 0 SHEET 2 C 2 THR A 107 LEU A 108 -1 O LEU A 108 N THR A 78
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000