10 20 30 40 50 60 70 80 1SOP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 15-MAR-04 1SOP
TITLE C-TERMINAL CYSTINE-RICH DOMAIN OF MINICOLLAGEN-I FROM HYDRA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINI-COLLAGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CYSTINE-RICH DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: FMOC SOLID PHASE SYNTHESIS + OXIDATION. THE SOURCE 4 SEQUENCE IS NATURALLY FOUND IN HYDRA SP.
KEYWDS COLLAGEN OXIDATIVE REFOLDING, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR A.G.MILBRADT,L.MORODER,C.RENNER
REVDAT 3 24-FEB-09 1SOP 1 VERSN REVDAT 2 05-APR-05 1SOP 1 JRNL REVDAT 1 27-APR-04 1SOP 0
JRNL AUTH E.POKIDYSHEVA,A.G.MILBRADT,S.MEIER,C.RENNER, JRNL AUTH 2 D.HAUSSINGER,H.P.BACHINGER,L.MORODER,S.GRZESIEK, JRNL AUTH 3 T.W.HOLSTEIN,S.OZBEK,J.ENGEL JRNL TITL THE STRUCTURE OF THE CYS-RICH TERMINAL DOMAIN OF JRNL TITL 2 HYDRA MINICOLLAGEN, WHICH IS INVOLVED IN DISULFIDE JRNL TITL 3 NETWORKS OF THE NEMATOCYST WALL. JRNL REF J.BIOL.CHEM. V. 279 30395 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15123641 JRNL DOI 10.1074/JBC.M403734200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 2.98 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INDEPENDENT DG STRUCTURES REMARK 3 SUBSEQUENTLY REFINED BY MDSA EXPERIMENTAL RESTRAINTS APPLIED REMARK 3 THROUGHOUT
REMARK 4 REMARK 4 1SOP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021879.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 3 MM PEPTIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ, 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.0, DGII INSIGHT 2000 REMARK 210 METHOD USED : DISTANCE GEOMETRY MD REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 CYS A 14 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 7 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ALA A 21 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 8 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 9 CYS A 14 CB - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 9 CYS A 14 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 9 PRO A 20 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 9 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 20 -155.31 -72.65 REMARK 500 1 LYS A 22 87.08 -154.97 REMARK 500 1 ARG A 23 104.44 62.19 REMARK 500 2 PRO A 20 -167.55 -51.96 REMARK 500 2 LYS A 22 84.74 71.21 REMARK 500 2 ARG A 23 113.97 -161.87 REMARK 500 3 PRO A 20 -169.84 -49.21 REMARK 500 3 LYS A 22 121.09 83.73 REMARK 500 3 ARG A 23 104.71 82.03 REMARK 500 5 PRO A 20 -152.91 -48.65 REMARK 500 5 ALA A 21 88.62 65.90 REMARK 500 5 ARG A 23 88.37 69.70 REMARK 500 6 PRO A 20 -168.19 -50.27 REMARK 500 7 GLN A 9 77.53 -110.32 REMARK 500 7 PRO A 20 -157.23 -74.69 REMARK 500 8 GLN A 9 79.09 -111.54 REMARK 500 8 PRO A 20 -172.44 -48.01 REMARK 500 8 ALA A 21 87.13 146.62 REMARK 500 8 ARG A 23 102.63 60.29 REMARK 500 9 PRO A 20 9.79 -54.63 REMARK 500 9 LYS A 22 153.16 75.83 REMARK 500 10 GLN A 9 79.07 -113.23 REMARK 500 10 PRO A 20 -168.00 -47.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 20 ALA A 21 1 149.02 REMARK 500 PRO A 20 ALA A 21 2 145.10 REMARK 500 PRO A 20 ALA A 21 4 111.21 REMARK 500 PRO A 20 ALA A 21 5 -145.64 REMARK 500 PRO A 20 ALA A 21 7 141.35 REMARK 500 PRO A 20 ALA A 21 9 -126.71 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1SOP A 1 24 UNP Q00484 Q00484_9CNID 126 149
SEQRES 1 A 26 ACE PRO CYS PRO PRO VAL CYS VAL ALA GLN CYS VAL PRO SEQRES 2 A 26 THR CYS PRO GLN TYR CYS CYS PRO ALA LYS ARG LYS NH2
HET ACE A 0 6 HET NH2 A 25 3
HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP
FORMUL 1 ACE C2 H4 O FORMUL 1 NH2 H2 N
SSBOND 1 CYS A 2 CYS A 18 1555 1555 1.99 SSBOND 2 CYS A 6 CYS A 14 1555 1555 1.99 SSBOND 3 CYS A 10 CYS A 19 1555 1555 2.00
LINK C ACE A 0 N PRO A 1 1555 1555 1.37 LINK C LYS A 24 N NH2 A 25 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000