10 20 30 40 50 60 70 80 1SO4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 12-MAR-04 1SO4
TITLE CRYSTAL STRUCTURE OF K64A MUTANT OF 3-KETO-L-GULONATE 6- TITLE 2 PHOSPHATE DECARBOXYLASE WITH BOUND L-THREONOHYDROXAMATE 4- TITLE 3 PHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-KETO-L-GULONATE 6-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEXULOSE-6-PHOSPHATE SYNTHASE; HUMPS; D-ARABINO 3- COMPND 5 HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE; COMPND 6 EC: 4.1.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ULAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TIM BARREL; BETA BARREL, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.L.WISE,W.S.YEW,J.A.GERLT,I.RAYMENT
REVDAT 2 24-FEB-09 1SO4 1 VERSN REVDAT 1 08-JUN-04 1SO4 0
JRNL AUTH E.L.WISE,W.S.YEW,J.A.GERLT,I.RAYMENT JRNL TITL EVOLUTION OF ENZYMATIC ACTIVITIES IN THE OROTIDINE JRNL TITL 2 5'-MONOPHOSPHATE DECARBOXYLASE SUPRAFAMILY: JRNL TITL 3 CRYSTALLOGRAPHIC EVIDENCE FOR A PROTON RELAY JRNL TITL 4 SYSTEM IN THE ACTIVE SITE OF 3-KETO-L-GULONATE JRNL TITL 5 6-PHOSPHATE DECARBOXYLASE(,) JRNL REF BIOCHEMISTRY V. 43 6438 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15157078 JRNL DOI 10.1021/BI0497392
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 49331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 563 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3118 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4554 ; 1.610 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7198 ; 1.413 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.197 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3749 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 744 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3802 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2051 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 393 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.296 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 0.936 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3384 ; 1.606 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1233 ; 2.561 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1170 ; 4.046 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SO4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021866.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.961 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.575 REMARK 200 RESOLUTION RANGE LOW (A) : 91.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 5000 METHYL ETHER, 100 MM REMARK 280 BTP PH 7.0, 5 MM MGCL2, MICROBATCH, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.48800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.48800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 122.97600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2443 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 216 REMARK 465 MET B 1
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 TYR B 116 OH REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2433 O HOH B 2563 1.93 REMARK 500 N SER B 2 O HOH B 2558 1.96 REMARK 500 O HOH B 2522 O HOH B 2562 2.06 REMARK 500 OD1 ASP B 100 O HOH B 2538 2.08 REMARK 500 OE2 GLU B 27 O HOH B 2557 2.09 REMARK 500 O HOH A 2451 O HOH A 2575 2.16 REMARK 500 O HOH A 2340 O HOH A 2577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 11 58.29 -95.41 REMARK 500 ASN B 80 20.49 80.75 REMARK 500 TYR B 116 49.29 -95.46 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2477 DISTANCE = 5.48 ANGSTROMS REMARK 525 HOH B2549 DISTANCE = 7.10 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TX4 A1301 O1 REMARK 620 2 HOH A2587 O 88.8 REMARK 620 3 GLU A 33 OE2 169.7 94.3 REMARK 620 4 HOH A2576 O 91.2 176.1 85.1 REMARK 620 5 TX4 A1301 O2 79.2 89.4 91.0 86.8 REMARK 620 6 ASP A 62 OD2 91.7 90.5 98.1 93.4 170.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE2 REMARK 620 2 HOH B2569 O 88.8 REMARK 620 3 HOH B2556 O 92.1 177.5 REMARK 620 4 ASP B 62 OD2 95.8 93.5 88.7 REMARK 620 5 TX4 B2301 O1 171.6 89.9 88.9 92.5 REMARK 620 6 TX4 B2301 O2 92.9 87.6 90.0 171.2 78.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2300 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TX4 A 1301 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TX4 B 2301
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q6L RELATED DB: PDB REMARK 900 RELATED ID: 1Q6O RELATED DB: PDB REMARK 900 RELATED ID: 1Q6Q RELATED DB: PDB REMARK 900 RELATED ID: 1Q6R RELATED DB: PDB REMARK 900 RELATED ID: 1SO3 RELATED DB: PDB REMARK 900 RELATED ID: 1SO5 RELATED DB: PDB REMARK 900 RELATED ID: 1SO6 RELATED DB: PDB
DBREF 1SO4 A 1 216 UNP P39304 SGAH_ECOLI 1 216 DBREF 1SO4 B 1 216 UNP P39304 SGAH_ECOLI 1 216
SEQADV 1SO4 ALA A 64 UNP P39304 LYS 64 ENGINEERED SEQADV 1SO4 ALA B 64 UNP P39304 LYS 64 ENGINEERED
SEQRES 1 A 216 MET SER LEU PRO MET LEU GLN VAL ALA LEU ASP ASN GLN SEQRES 2 A 216 THR MET ASP SER ALA TYR GLU THR THR ARG LEU ILE ALA SEQRES 3 A 216 GLU GLU VAL ASP ILE ILE GLU VAL GLY THR ILE LEU CYS SEQRES 4 A 216 VAL GLY GLU GLY VAL ARG ALA VAL ARG ASP LEU LYS ALA SEQRES 5 A 216 LEU TYR PRO HIS LYS ILE VAL LEU ALA ASP ALA ALA ILE SEQRES 6 A 216 ALA ASP ALA GLY LYS ILE LEU SER ARG MET CYS PHE GLU SEQRES 7 A 216 ALA ASN ALA ASP TRP VAL THR VAL ILE CYS CYS ALA ASP SEQRES 8 A 216 ILE ASN THR ALA LYS GLY ALA LEU ASP VAL ALA LYS GLU SEQRES 9 A 216 PHE ASN GLY ASP VAL GLN ILE GLU LEU THR GLY TYR TRP SEQRES 10 A 216 THR TRP GLU GLN ALA GLN GLN TRP ARG ASP ALA GLY ILE SEQRES 11 A 216 GLY GLN VAL VAL TYR HIS ARG SER ARG ASP ALA GLN ALA SEQRES 12 A 216 ALA GLY VAL ALA TRP GLY GLU ALA ASP ILE THR ALA ILE SEQRES 13 A 216 LYS ARG LEU SER ASP MET GLY PHE LYS VAL THR VAL THR SEQRES 14 A 216 GLY GLY LEU ALA LEU GLU ASP LEU PRO LEU PHE LYS GLY SEQRES 15 A 216 ILE PRO ILE HIS VAL PHE ILE ALA GLY ARG SER ILE ARG SEQRES 16 A 216 ASP ALA ALA SER PRO VAL GLU ALA ALA ARG GLN PHE LYS SEQRES 17 A 216 ARG SER ILE ALA GLU LEU TRP GLY SEQRES 1 B 216 MET SER LEU PRO MET LEU GLN VAL ALA LEU ASP ASN GLN SEQRES 2 B 216 THR MET ASP SER ALA TYR GLU THR THR ARG LEU ILE ALA SEQRES 3 B 216 GLU GLU VAL ASP ILE ILE GLU VAL GLY THR ILE LEU CYS SEQRES 4 B 216 VAL GLY GLU GLY VAL ARG ALA VAL ARG ASP LEU LYS ALA SEQRES 5 B 216 LEU TYR PRO HIS LYS ILE VAL LEU ALA ASP ALA ALA ILE SEQRES 6 B 216 ALA ASP ALA GLY LYS ILE LEU SER ARG MET CYS PHE GLU SEQRES 7 B 216 ALA ASN ALA ASP TRP VAL THR VAL ILE CYS CYS ALA ASP SEQRES 8 B 216 ILE ASN THR ALA LYS GLY ALA LEU ASP VAL ALA LYS GLU SEQRES 9 B 216 PHE ASN GLY ASP VAL GLN ILE GLU LEU THR GLY TYR TRP SEQRES 10 B 216 THR TRP GLU GLN ALA GLN GLN TRP ARG ASP ALA GLY ILE SEQRES 11 B 216 GLY GLN VAL VAL TYR HIS ARG SER ARG ASP ALA GLN ALA SEQRES 12 B 216 ALA GLY VAL ALA TRP GLY GLU ALA ASP ILE THR ALA ILE SEQRES 13 B 216 LYS ARG LEU SER ASP MET GLY PHE LYS VAL THR VAL THR SEQRES 14 B 216 GLY GLY LEU ALA LEU GLU ASP LEU PRO LEU PHE LYS GLY SEQRES 15 B 216 ILE PRO ILE HIS VAL PHE ILE ALA GLY ARG SER ILE ARG SEQRES 16 B 216 ASP ALA ALA SER PRO VAL GLU ALA ALA ARG GLN PHE LYS SEQRES 17 B 216 ARG SER ILE ALA GLU LEU TRP GLY
HET MG B1300 1 HET MG A2300 1 HET TX4 A1301 14 HET TX4 B2301 14
HETNAM MG MAGNESIUM ION HETNAM TX4 L-THREONOHYDROXAMATE 4-PHOSPHATE
FORMUL 3 MG 2(MG 2+) FORMUL 5 TX4 2(C4 H12 N O8 P) FORMUL 7 HOH *563(H2 O)
HELIX 1 1 THR A 14 ALA A 26 1 13 HELIX 2 2 GLU A 27 VAL A 29 5 3 HELIX 3 3 GLY A 35 GLY A 43 1 9 HELIX 4 4 VAL A 44 TYR A 54 1 11 HELIX 5 5 ALA A 68 ALA A 79 1 12 HELIX 6 6 ASP A 91 PHE A 105 1 15 HELIX 7 7 THR A 118 ALA A 128 1 11 HELIX 8 8 SER A 138 ALA A 144 1 7 HELIX 9 9 GLY A 149 MET A 162 1 14 HELIX 10 10 ALA A 173 LYS A 181 5 9 HELIX 11 11 GLY A 191 ASP A 196 1 6 HELIX 12 12 SER A 199 TRP A 215 1 17 HELIX 13 13 THR B 14 ALA B 26 1 13 HELIX 14 14 GLU B 27 VAL B 29 5 3 HELIX 15 15 GLY B 35 GLY B 43 1 9 HELIX 16 16 VAL B 44 TYR B 54 1 11 HELIX 17 17 ALA B 68 ALA B 79 1 12 HELIX 18 18 ASP B 91 PHE B 105 1 15 HELIX 19 19 THR B 118 GLY B 129 1 12 HELIX 20 20 SER B 138 ALA B 144 1 7 HELIX 21 21 GLY B 149 MET B 162 1 14 HELIX 22 22 ALA B 173 LYS B 181 5 9 HELIX 23 23 GLY B 191 ASP B 196 1 6 HELIX 24 24 SER B 199 TRP B 215 1 17
SHEET 1 A 9 MET A 5 LEU A 10 0 SHEET 2 A 9 ILE A 31 VAL A 34 1 O GLU A 33 N VAL A 8 SHEET 3 A 9 ILE A 58 ILE A 65 1 O LEU A 60 N VAL A 34 SHEET 4 A 9 TRP A 83 ILE A 87 1 O TRP A 83 N ALA A 61 SHEET 5 A 9 ASP A 108 LEU A 113 1 O GLU A 112 N VAL A 86 SHEET 6 A 9 GLN A 132 HIS A 136 1 O VAL A 134 N LEU A 113 SHEET 7 A 9 LYS A 165 THR A 169 1 O THR A 167 N TYR A 135 SHEET 8 A 9 VAL A 187 ALA A 190 1 O VAL A 187 N VAL A 168 SHEET 9 A 9 MET A 5 LEU A 10 1 N MET A 5 O PHE A 188 SHEET 1 B 9 MET B 5 LEU B 10 0 SHEET 2 B 9 ILE B 31 VAL B 34 1 O GLU B 33 N VAL B 8 SHEET 3 B 9 ILE B 58 ILE B 65 1 O LEU B 60 N VAL B 34 SHEET 4 B 9 TRP B 83 ILE B 87 1 O TRP B 83 N ALA B 61 SHEET 5 B 9 ASP B 108 LEU B 113 1 O GLU B 112 N VAL B 86 SHEET 6 B 9 GLN B 132 HIS B 136 1 O VAL B 134 N LEU B 113 SHEET 7 B 9 LYS B 165 THR B 169 1 O THR B 167 N TYR B 135 SHEET 8 B 9 VAL B 187 ALA B 190 1 O VAL B 187 N VAL B 168 SHEET 9 B 9 MET B 5 LEU B 10 1 N GLN B 7 O ALA B 190
SSBOND 1 CYS A 89 CYS B 89 1555 1555 2.04
LINK O1 TX4 A1301 MG MG A2300 1555 1555 2.04 LINK MG MG A2300 O HOH A2587 1555 1555 2.04 LINK MG MG A2300 OE2 GLU A 33 1555 1555 2.03 LINK MG MG A2300 O HOH A2576 1555 1555 2.19 LINK MG MG A2300 O2 TX4 A1301 1555 1555 2.11 LINK MG MG A2300 OD2 ASP A 62 1555 1555 2.04 LINK MG MG B1300 OE2 GLU B 33 1555 1555 2.01 LINK MG MG B1300 O HOH B2569 1555 1555 2.07 LINK MG MG B1300 O HOH B2556 1555 1555 2.17 LINK MG MG B1300 OD2 ASP B 62 1555 1555 2.04 LINK MG MG B1300 O1 TX4 B2301 1555 1555 2.00 LINK MG MG B1300 O2 TX4 B2301 1555 1555 2.13
SITE 1 AC1 5 GLU B 33 ASP B 62 TX4 B2301 HOH B2556 SITE 2 AC1 5 HOH B2569 SITE 1 AC2 5 GLU A 33 ASP A 62 TX4 A1301 HOH A2576 SITE 2 AC2 5 HOH A2587 SITE 1 AC3 18 ALA A 9 ASP A 11 GLU A 33 ASP A 62 SITE 2 AC3 18 HIS A 136 THR A 169 GLY A 171 GLY A 191 SITE 3 AC3 18 ARG A 192 MG A2300 HOH A2307 HOH A2313 SITE 4 AC3 18 HOH A2337 HOH A2391 HOH A2464 HOH A2576 SITE 5 AC3 18 HOH A2587 ASP B 67 SITE 1 AC4 20 ASP A 67 ALA B 9 ASP B 11 GLU B 33 SITE 2 AC4 20 ASP B 62 HIS B 136 THR B 169 GLY B 171 SITE 3 AC4 20 GLY B 191 ARG B 192 MG B1300 HOH B2302 SITE 4 AC4 20 HOH B2303 HOH B2329 HOH B2343 HOH B2345 SITE 5 AC4 20 HOH B2437 HOH B2489 HOH B2556 HOH B2569
CRYST1 122.976 41.900 91.322 90.00 96.92 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008132 0.000000 0.000987 0.00000
SCALE2 0.000000 0.023866 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011031 0.00000