10 20 30 40 50 60 70 80 1SL4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 05-MAR-04 1SL4
TITLE CRYSTAL STRUCTURE OF DC-SIGN CARBOHYDRATE RECOGNITION TITLE 2 DOMAIN COMPLEXED WITH MAN4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDC-SIGN1B TYPE I ISOFORM; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: BL21/DE3
KEYWDS DC-SIGN, C-TYPE LECTIN, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.GUO,H.FEINBERG,E.CONROY,D.A.MITCHELL,R.ALVAREZ,O.BLIXT, AUTHOR 2 M.E.TAYLOR,W.I.WEIS,K.DRICKAMER
REVDAT 3 24-FEB-09 1SL4 1 VERSN REVDAT 2 14-SEP-04 1SL4 1 REMARK REVDAT 1 15-JUN-04 1SL4 0
JRNL AUTH Y.GUO,H.FEINBERG,E.CONROY,D.A.MITCHELL,R.ALVAREZ, JRNL AUTH 2 O.BLIXT,M.E.TAYLOR,W.I.WEIS,K.DRICKAMER JRNL TITL STRUCTURAL BASIS FOR DISTINCT LIGAND-BINDING AND JRNL TITL 2 TARGETING PROPERTIES OF THE RECEPTORS DC-SIGN AND JRNL TITL 3 DC-SIGNR JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 591 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15195147 JRNL DOI 10.1038/NSMB784
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 981050.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1219 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3725 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.920 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 54.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PROTEIN_BREAK.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SL4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021806.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 53.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23900 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 400, 0.1M TRIS PH 7.0., REMARK 280 PROTEIN SOLUTION: 10 MG/ML PROTEIN, 5MM CACL2, 10 MM REMARK 280 OLIGOSACCHARIDE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.66500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.99750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.33250 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 250 REMARK 465 ARG A 251 REMARK 465 LEU A 252 REMARK 465 SER A 385 REMARK 465 ARG A 386 REMARK 465 ASP A 387 REMARK 465 GLU A 388 REMARK 465 GLU A 389 REMARK 465 GLN A 390 REMARK 465 PHE A 391 REMARK 465 LEU A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 ALA A 397 REMARK 465 THR A 398 REMARK 465 PRO A 399 REMARK 465 ASN A 400 REMARK 465 PRO A 401 REMARK 465 PRO A 402 REMARK 465 PRO A 403 REMARK 465 ALA A 404
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 292 121.53 -38.18 REMARK 500 ASN A 350 28.01 48.50 REMARK 500 GLU A 353 89.09 73.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 354 O REMARK 620 2 ASP A 320 OD1 90.3 REMARK 620 3 ASP A 320 OD2 127.1 50.8 REMARK 620 4 GLU A 324 OE1 145.8 98.2 81.9 REMARK 620 5 GLU A 324 OE2 145.4 120.2 72.3 52.0 REMARK 620 6 ASN A 350 OD1 77.5 156.5 150.7 82.0 78.5 REMARK 620 7 ASP A 355 OD1 77.1 73.5 114.3 73.8 124.6 84.1 REMARK 620 8 HOH A 412 O 73.0 108.7 86.3 133.1 81.2 87.1 150.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 354 OE1 REMARK 620 2 ASN A 365 OD1 148.1 REMARK 620 3 ASP A 366 O 71.4 78.7 REMARK 620 4 ASP A 366 OD1 90.7 91.4 73.4 REMARK 620 5 MAN A 3 O3 111.9 82.5 136.7 146.0 REMARK 620 6 MAN A 3 O4 77.9 82.1 71.1 144.5 67.9 REMARK 620 7 GLU A 347 OE1 141.7 69.1 133.9 75.3 71.3 132.3 REMARK 620 8 ASN A 349 OD1 71.8 140.1 137.8 87.1 77.0 119.7 72.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 411 O REMARK 620 2 ASP A 355 OD2 76.4 REMARK 620 3 HOH A 409 O 88.5 82.5 REMARK 620 4 GLU A 324 OE1 162.9 118.9 86.3 REMARK 620 5 GLU A 353 OE2 91.1 108.6 168.5 90.8 REMARK 620 6 ASP A 355 OD1 123.8 50.4 99.4 73.1 90.4 REMARK 620 7 HOH A 410 O 78.3 153.0 87.8 85.2 80.8 156.6 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 3 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 4 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 406 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 407
DBREF 1SL4 A 250 404 GB 15281089 AAK91854 250 404
SEQRES 1 A 155 GLU ARG LEU CYS HIS PRO CYS PRO TRP GLU TRP THR PHE SEQRES 2 A 155 PHE GLN GLY ASN CYS TYR PHE MET SER ASN SER GLN ARG SEQRES 3 A 155 ASN TRP HIS ASP SER ILE THR ALA CYS LYS GLU VAL GLY SEQRES 4 A 155 ALA GLN LEU VAL VAL ILE LYS SER ALA GLU GLU GLN ASN SEQRES 5 A 155 PHE LEU GLN LEU GLN SER SER ARG SER ASN ARG PHE THR SEQRES 6 A 155 TRP MET GLY LEU SER ASP LEU ASN GLN GLU GLY THR TRP SEQRES 7 A 155 GLN TRP VAL ASP GLY SER PRO LEU LEU PRO SER PHE LYS SEQRES 8 A 155 GLN TYR TRP ASN ARG GLY GLU PRO ASN ASN VAL GLY GLU SEQRES 9 A 155 GLU ASP CYS ALA GLU PHE SER GLY ASN GLY TRP ASN ASP SEQRES 10 A 155 ASP LYS CYS ASN LEU ALA LYS PHE TRP ILE CYS LYS LYS SEQRES 11 A 155 SER ALA ALA SER CYS SER ARG ASP GLU GLU GLN PHE LEU SEQRES 12 A 155 SER PRO ALA PRO ALA THR PRO ASN PRO PRO PRO ALA
HET MAN A 1 12 HET MAN A 2 11 HET MAN A 3 11 HET MAN A 4 11 HET CA A 405 1 HET CA A 406 1 HET CA A 407 1
HETNAM MAN ALPHA-D-MANNOSE HETNAM CA CALCIUM ION
FORMUL 2 MAN 4(C6 H12 O6) FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *152(H2 O)
HELIX 1 1 ASN A 276 VAL A 287 1 12 HELIX 2 2 SER A 296 ASN A 311 1 16 HELIX 3 3 PHE A 339 TRP A 343 5 5
SHEET 1 A 5 THR A 261 PHE A 263 0 SHEET 2 A 5 ASN A 266 MET A 270 -1 O TYR A 268 N THR A 261 SHEET 3 A 5 PHE A 374 SER A 380 -1 O LYS A 379 N CYS A 267 SHEET 4 A 5 THR A 314 SER A 319 1 N TRP A 315 O PHE A 374 SHEET 5 A 5 GLN A 328 TRP A 329 -1 O GLN A 328 N SER A 319 SHEET 1 B 5 GLN A 290 LEU A 291 0 SHEET 2 B 5 PHE A 374 SER A 380 -1 O LYS A 378 N GLN A 290 SHEET 3 B 5 THR A 314 SER A 319 1 N TRP A 315 O PHE A 374 SHEET 4 B 5 CYS A 356 SER A 360 -1 O PHE A 359 N THR A 314 SHEET 5 B 5 GLY A 363 ASP A 367 -1 O GLY A 363 N SER A 360
SSBOND 1 CYS A 253 CYS A 384 1555 1555 2.03 SSBOND 2 CYS A 256 CYS A 267 1555 1555 2.03 SSBOND 3 CYS A 284 CYS A 377 1555 1555 2.05 SSBOND 4 CYS A 356 CYS A 369 1555 1555 2.03
LINK O6 MAN A 1 C1 MAN A 2 1555 1555 1.40 LINK O3 MAN A 2 C1 MAN A 3 1555 1555 1.40 LINK O6 MAN A 2 C1 MAN A 4 1555 1555 1.41 LINK CA CA A 405 O GLU A 354 1555 1555 2.42 LINK CA CA A 405 OD1 ASP A 320 1555 1555 2.60 LINK CA CA A 405 OD2 ASP A 320 1555 1555 2.50 LINK CA CA A 405 OE1 GLU A 324 1555 1555 2.49 LINK CA CA A 405 OE2 GLU A 324 1555 1555 2.51 LINK CA CA A 405 OD1 ASN A 350 1555 1555 2.47 LINK CA CA A 405 OD1 ASP A 355 1555 1555 2.40 LINK CA CA A 405 O HOH A 412 1555 1555 2.40 LINK CA CA A 406 OE1 GLU A 354 1555 1555 2.55 LINK CA CA A 406 OD1 ASN A 365 1555 1555 2.39 LINK CA CA A 406 O ASP A 366 1555 1555 2.50 LINK CA CA A 406 OD1 ASP A 366 1555 1555 2.35 LINK CA CA A 406 O3 MAN A 3 1555 1555 2.52 LINK CA CA A 406 O4 MAN A 3 1555 1555 2.57 LINK CA CA A 406 OE1 GLU A 347 1555 1555 2.51 LINK CA CA A 406 OD1 ASN A 349 1555 1555 2.37 LINK CA CA A 407 O HOH A 411 1555 1555 2.32 LINK CA CA A 407 OD2 ASP A 355 1555 1555 2.56 LINK CA CA A 407 O HOH A 409 1555 1555 2.42 LINK CA CA A 407 OE1 GLU A 324 1555 1555 2.35 LINK CA CA A 407 OE2 GLU A 353 1555 1555 2.12 LINK CA CA A 407 OD1 ASP A 355 1555 1555 2.57 LINK CA CA A 407 O HOH A 410 1555 1555 2.38
CISPEP 1 GLU A 347 PRO A 348 0 -0.38
SITE 1 AC1 3 MAN A 2 ARG A 309 HOH A 559 SITE 1 AC2 6 MAN A 1 MAN A 3 MAN A 4 PHE A 313 SITE 2 AC2 6 HOH A 408 HOH A 426 SITE 1 AC3 10 MAN A 2 ARG A 309 GLU A 347 ASN A 349 SITE 2 AC3 10 GLU A 354 ASN A 365 ASP A 366 LYS A 368 SITE 3 AC3 10 CA A 406 HOH A 512 SITE 1 AC4 5 MAN A 2 ASN A 344 SER A 360 GLY A 361 SITE 2 AC4 5 HOH A 515 SITE 1 AC5 6 ASP A 320 GLU A 324 ASN A 350 GLU A 354 SITE 2 AC5 6 ASP A 355 HOH A 412 SITE 1 AC6 6 MAN A 3 GLU A 347 ASN A 349 GLU A 354 SITE 2 AC6 6 ASN A 365 ASP A 366 SITE 1 AC7 6 GLU A 324 GLU A 353 ASP A 355 HOH A 409 SITE 2 AC7 6 HOH A 410 HOH A 411
CRYST1 55.660 55.660 53.330 90.00 90.00 90.00 P 43 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017965 0.000000 0.000000 0.00000
SCALE2 0.000000 0.017965 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018751 0.00000