10 20 30 40 50 60 70 80 1SIY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 02-MAR-04 1SIY
TITLE NMR STRUCTURE OF MUNG BEAN NON-SPECIFIC LIPID TRANSFER TITLE 2 PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSPECIFIC LIPID-TRANSFER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTP 1, NS-LTP1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIGNA RADIATA VAR. RADIATA; SOURCE 3 ORGANISM_COMMON: MUNG BEAN; SOURCE 4 ORGANISM_TAXID: 3916; SOURCE 5 STRAIN: VAR. RADIATA
KEYWDS ALPHA HELIX, LIPID BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR K.F.LIN,Y.N.LIU,S.T.D.HSU,D.SAMUEL,C.S.CHENG,A.M.J.J.BONVIN, AUTHOR 2 P.C.LYU
REVDAT 5 21-APR-09 1SIY 1 REMARK REVDAT REVDAT 4 24-FEB-09 1SIY 1 VERSN REVDAT 3 19-APR-05 1SIY 1 JRNL REVDAT 2 12-APR-05 1SIY 1 DBREF REVDAT 1 05-APR-05 1SIY 0
JRNL AUTH K.F.LIN,Y.N.LIU,S.T.D.HSU,D.SAMUEL,C.S.CHENG, JRNL AUTH 2 A.M.J.J.BONVIN,P.C.LYU JRNL TITL CHARACTERIZATION AND STRUCTURAL ANALYSES OF JRNL TITL 2 NONSPECIFIC LIPID TRANSFER PROTEIN 1 FROM MUNG BEAN JRNL REF BIOCHEMISTRY V. 44 5703 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15823028 JRNL DOI 10.1021/BI047608V
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.0 REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE CALCULATED FROM 1675 REMARK 3 ASSIGNED NOE. 4 DISULFIDE BONDS ARE SHOWN
REMARK 4 REMARK 4 1SIY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021743.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM LTP1; 20MM PHOSPHATE REMARK 210 BUFFER NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.1, X-PLOR 3.8, ARIA REMARK 210 2.0, SPARKY 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 16 -43.91 -146.71 REMARK 500 1 PRO A 25 4.95 -69.30 REMARK 500 1 ARG A 39 -58.41 79.47 REMARK 500 1 VAL A 58 98.64 -56.30 REMARK 500 1 ASN A 86 109.02 65.45 REMARK 500 2 CYS A 3 -24.06 73.33 REMARK 500 2 GLN A 18 -76.85 -70.32 REMARK 500 2 LYS A 19 84.09 -150.81 REMARK 500 2 ASN A 62 116.41 65.15 REMARK 500 2 ASN A 76 71.02 48.51 REMARK 500 2 SER A 89 -78.32 -118.09 REMARK 500 2 ILE A 90 -135.31 36.71 REMARK 500 3 CYS A 3 -23.65 71.35 REMARK 500 3 LEU A 35 -72.76 -81.40 REMARK 500 3 ARG A 39 -64.99 88.54 REMARK 500 3 ASN A 76 95.26 50.74 REMARK 500 3 PRO A 78 -159.16 -73.21 REMARK 500 3 TYR A 79 -164.94 47.91 REMARK 500 3 SER A 89 -73.50 -117.62 REMARK 500 3 ILE A 90 -119.37 35.25 REMARK 500 4 CYS A 3 3.53 -69.31 REMARK 500 4 PHE A 16 -42.70 -157.65 REMARK 500 4 LYS A 19 -79.02 -84.43 REMARK 500 4 ASN A 36 -47.75 -139.36 REMARK 500 4 SER A 38 96.87 -61.88 REMARK 500 4 ARG A 39 -71.27 -55.20 REMARK 500 4 ARG A 45 32.20 -79.91 REMARK 500 4 ALA A 46 -43.87 -137.03 REMARK 500 4 ASN A 62 98.62 40.38 REMARK 500 4 VAL A 75 72.29 -112.52 REMARK 500 5 ASN A 36 -54.43 -167.95 REMARK 500 5 ARG A 39 -80.35 -77.56 REMARK 500 5 ARG A 44 -47.38 -131.27 REMARK 500 5 VAL A 75 -56.82 -123.18 REMARK 500 5 ASN A 76 111.56 65.04 REMARK 500 5 ASN A 86 43.08 -77.13 REMARK 500 5 SER A 89 -75.15 -122.10 REMARK 500 5 ILE A 90 -134.45 35.44 REMARK 500 6 CYS A 3 7.90 -68.71 REMARK 500 6 VAL A 22 126.25 62.82 REMARK 500 6 LEU A 35 -62.63 -93.46 REMARK 500 6 ASN A 62 97.48 55.76 REMARK 500 6 SER A 89 -89.18 -134.22 REMARK 500 6 ILE A 90 -159.08 39.37 REMARK 500 7 LEU A 35 -70.97 -92.52 REMARK 500 7 THR A 40 -173.83 -174.76 REMARK 500 7 ILE A 61 -81.62 -89.14 REMARK 500 7 ASN A 62 106.21 99.30 REMARK 500 7 VAL A 75 -88.69 -123.89 REMARK 500 7 ASN A 76 134.45 68.80 REMARK 500 7 THR A 83 35.22 -76.52 REMARK 500 7 SER A 89 18.62 -148.68 REMARK 500 8 ARG A 39 -68.06 -92.41 REMARK 500 8 ARG A 45 47.85 -145.70 REMARK 500 8 ALA A 46 -33.36 -163.35 REMARK 500 8 ILE A 61 140.08 79.24 REMARK 500 8 SER A 82 32.63 -72.97 REMARK 500 8 THR A 83 18.60 56.33 REMARK 500 8 ILE A 90 -77.65 -82.62 REMARK 500 9 CYS A 3 -30.25 71.09 REMARK 500 9 GLN A 18 -77.95 -87.36 REMARK 500 9 VAL A 58 98.88 -69.16 REMARK 500 9 SER A 82 22.70 -69.30 REMARK 500 9 THR A 83 17.79 57.23 REMARK 500 9 SER A 89 -59.76 -136.50 REMARK 500 9 ILE A 90 131.38 54.11 REMARK 500 10 SER A 38 104.58 -57.85 REMARK 500 10 ARG A 39 -78.58 -54.44 REMARK 500 10 ALA A 57 -72.99 -70.76 REMARK 500 10 VAL A 58 44.88 35.62 REMARK 500 10 ILE A 81 -31.65 62.50 REMARK 500 10 ASN A 86 -15.37 67.67 REMARK 500 10 CYS A 87 -23.31 74.00 REMARK 500 11 CYS A 3 -33.57 71.25 REMARK 500 11 PHE A 16 -39.98 -145.03 REMARK 500 11 GLN A 18 -60.69 -96.92 REMARK 500 11 LEU A 35 -68.97 -97.11 REMARK 500 11 THR A 40 -168.84 -164.96 REMARK 500 11 ASN A 76 91.94 54.08 REMARK 500 11 THR A 83 22.00 -78.58 REMARK 500 11 SER A 89 28.42 -142.01 REMARK 500 12 THR A 2 -82.40 76.20 REMARK 500 12 LEU A 35 -72.44 -88.06 REMARK 500 12 SER A 38 87.59 -69.90 REMARK 500 12 ARG A 39 -82.58 -59.88 REMARK 500 12 VAL A 75 -50.71 -122.44 REMARK 500 12 ASN A 76 101.80 55.40 REMARK 500 12 PRO A 78 45.85 -74.80 REMARK 500 12 ILE A 81 -1.08 64.53 REMARK 500 12 ASN A 86 96.76 61.93 REMARK 500 12 ILE A 90 -41.31 -132.21 REMARK 500 13 CYS A 3 5.93 -66.02 REMARK 500 13 GLN A 18 -64.59 -100.46 REMARK 500 13 VAL A 22 101.93 41.97 REMARK 500 13 PRO A 25 10.76 -69.54 REMARK 500 13 LEU A 35 -70.60 -84.69 REMARK 500 13 VAL A 58 86.18 -68.53 REMARK 500 13 ASN A 86 82.47 59.80 REMARK 500 14 THR A 2 -85.76 -156.81 REMARK 500 14 LYS A 19 -70.13 -93.96 REMARK 500 14 ARG A 59 -68.18 67.54 REMARK 500 14 ILE A 61 124.87 74.66 REMARK 500 14 CYS A 73 -34.95 -143.87 REMARK 500 14 SER A 89 -81.56 -133.77 REMARK 500 14 ILE A 90 -93.15 29.91 REMARK 500 15 THR A 2 -87.88 -168.24 REMARK 500 15 PHE A 16 -44.22 -154.20 REMARK 500 15 LEU A 35 -69.90 -91.67 REMARK 500 15 VAL A 58 96.18 -55.36 REMARK 500 15 SER A 89 -42.41 -148.76 REMARK 500 15 ILE A 90 -171.39 47.99 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6089 RELATED DB: BMRB REMARK 900 RELEASED CHEMICAL SHIFT OF THE SAME PROTEIN
DBREF 1SIY A 1 91 UNP P83434 NLTP1_PHAAU 1 91
SEQRES 1 A 91 MET THR CYS GLY GLN VAL GLN GLY ASN LEU ALA GLN CYS SEQRES 2 A 91 ILE GLY PHE LEU GLN LYS GLY GLY VAL VAL PRO PRO SER SEQRES 3 A 91 CYS CYS THR GLY VAL LYS ASN ILE LEU ASN SER SER ARG SEQRES 4 A 91 THR THR ALA ASP ARG ARG ALA VAL CYS SER CYS LEU LYS SEQRES 5 A 91 ALA ALA ALA GLY ALA VAL ARG GLY ILE ASN PRO ASN ASN SEQRES 6 A 91 ALA GLU ALA LEU PRO GLY LYS CYS GLY VAL ASN ILE PRO SEQRES 7 A 91 TYR LYS ILE SER THR SER THR ASN CYS ASN SER ILE ASN
HELIX 1 1 VAL A 6 GLN A 18 1 13 HELIX 2 2 PRO A 24 ASN A 36 1 13 HELIX 3 3 THR A 41 ALA A 55 1 15 HELIX 4 4 ASN A 62 GLY A 74 1 13
SSBOND 1 CYS A 3 CYS A 50 1555 1555 2.03 SSBOND 2 CYS A 13 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.04 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000