10 20 30 40 50 60 70 80 1SE5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 16-FEB-04 1SE5
TITLE CRYSTAL STRUCTURE OF METHYLMALONYL-COA MUTASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE METHYLMALONYL-COA MUTASE LARGE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MCM; COMPND 5 EC: 5.4.99.2
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_COMMON: BACTERIA
KEYWDS ISOMERASE
EXPDTA THEORETICAL MODEL
AUTHOR P.J.MAGESH
REVDAT 1 24-FEB-04 1SE5 0
JRNL AUTH N.MCKIE,N.H.KEEP,M.L.PATCHETT,P.F.LEADLAY, JRNL AUTH 2 P.J.MAGESH JRNL TITL STRUCTURE OF METHYLMALONYL-COA MUTASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LAMBERT,N.LEONARD,X.DE BOLLE,E.DEPIEREUX REMARK 1 TITL ESYPRED3D: PREDICTION OF PROTEIN 3D STRUCTURES REMARK 1 REF BIOINFORMATICS V. 18 1250 2002 REMARK 1 REFN UK ISSN 1367-4803
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SE5 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-2004. REMARK 100 THE RCSB ID CODE IS RCSB021631.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 64 REMARK 465 THR A 65 REMARK 465 THR A 66 REMARK 465 LYS A 67 REMARK 465 THR A 68 REMARK 465 PRO A 69 REMARK 465 VAL A 70 REMARK 465 GLY A 809 REMARK 465 TYR A 810 REMARK 465 THR A 811 REMARK 465 LEU A 812 REMARK 465 ASP A 813
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 440 OE1 - CD - NE2 ANGL. DEV. = 14.8 DEGREES REMARK 500 GLN A 440 CG - CD - OE1 ANGL. DEV. =-78.5 DEGREES REMARK 500 GLN A 440 CG - CD - NE2 ANGL. DEV. =-21.2 DEGREES REMARK 500 GLY A 484 C - N - CA ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 134 152.05 75.63
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REQ RELATED DB: PDB REMARK 900 METHYLMALONYL-COA MUTASE
DBREF 1SE5 A 64 813 UNP P71774 MUTB_MYCTU 1 750
SEQRES 1 A 750 MET THR THR LYS THR PRO VAL ILE GLY SER PHE ALA GLY SEQRES 2 A 750 VAL PRO LEU HIS SER GLU ARG ALA ALA GLN SER PRO THR SEQRES 3 A 750 GLU ALA ALA VAL HIS THR HIS VAL ALA ALA ALA ALA ALA SEQRES 4 A 750 ALA HIS GLY TYR THR PRO GLU GLN LEU VAL TRP HIS THR SEQRES 5 A 750 PRO GLU GLY ILE ASP VAL THR PRO VAL TYR ILE ALA ALA SEQRES 6 A 750 ASP ARG ALA ALA ALA GLU ALA GLU GLY TYR PRO LEU HIS SEQRES 7 A 750 SER PHE PRO GLY GLU PRO PRO PHE VAL ARG GLY PRO TYR SEQRES 8 A 750 PRO THR MET TYR VAL ASN GLN PRO TRP THR ILE ARG GLN SEQRES 9 A 750 TYR ALA GLY PHE SER THR ALA ALA ASP SER ASN ALA PHE SEQRES 10 A 750 TYR ARG ARG ASN LEU ALA ALA GLY GLN LYS GLY LEU SER SEQRES 11 A 750 VAL ALA PHE ASP LEU ALA THR HIS ARG GLY TYR ASP SER SEQRES 12 A 750 ASP HIS PRO ARG VAL GLN GLY ASP VAL GLY MET ALA GLY SEQRES 13 A 750 VAL ALA ILE ASP SER ILE LEU ASP MET ARG GLN LEU PHE SEQRES 14 A 750 ASP GLY ILE ASP LEU SER THR VAL SER VAL SER MET THR SEQRES 15 A 750 MET ASN GLY ALA VAL LEU PRO ILE LEU ALA LEU TYR VAL SEQRES 16 A 750 VAL ALA ALA GLU GLU GLN GLY VAL ALA PRO GLU GLN LEU SEQRES 17 A 750 ALA GLY THR ILE GLN ASN ASP ILE LEU LYS GLU PHE MET SEQRES 18 A 750 VAL ARG ASN THR TYR ILE TYR PRO PRO LYS PRO SER MET SEQRES 19 A 750 ARG ILE ILE SER ASP ILE PHE ALA TYR THR SER ALA LYS SEQRES 20 A 750 MET PRO LYS PHE ASN SER ILE SER ILE SER GLY TYR HIS SEQRES 21 A 750 ILE GLN GLU ALA GLY ALA THR ALA ASP LEU GLU LEU ALA SEQRES 22 A 750 TYR THR LEU ALA ASP GLY VAL ASP TYR ILE ARG ALA GLY SEQRES 23 A 750 LEU ASN ALA GLY LEU ASP ILE ASP SER PHE ALA PRO ARG SEQRES 24 A 750 LEU SER PHE PHE TRP GLY ILE GLY MET ASN PHE PHE MET SEQRES 25 A 750 GLU VAL ALA LYS LEU ARG ALA GLY ARG LEU LEU TRP SER SEQRES 26 A 750 GLU LEU VAL ALA GLN PHE ALA PRO LYS SER ALA LYS SER SEQRES 27 A 750 LEU SER LEU ARG THR HIS SER GLN THR SER GLY TRP SER SEQRES 28 A 750 LEU THR ALA GLN ASP VAL PHE ASN ASN VAL ALA ARG THR SEQRES 29 A 750 CYS ILE GLU ALA MET ALA ALA THR GLN GLY HIS THR GLN SEQRES 30 A 750 SER LEU HIS THR ASN ALA LEU ASP GLU ALA LEU ALA LEU SEQRES 31 A 750 PRO THR ASP PHE SER ALA ARG ILE ALA ARG ASN THR GLN SEQRES 32 A 750 LEU VAL LEU GLN GLN GLU SER GLY THR THR ARG PRO ILE SEQRES 33 A 750 ASP PRO TRP GLY GLY SER TYR TYR VAL GLU TRP LEU THR SEQRES 34 A 750 HIS ARG LEU ALA ARG ARG ALA ARG ALA HIS ILE ALA GLU SEQRES 35 A 750 VAL ALA GLU HIS GLY GLY MET ALA GLN ALA ILE SER ASP SEQRES 36 A 750 GLY ILE PRO LYS LEU ARG ILE GLU GLU ALA ALA ALA ARG SEQRES 37 A 750 THR GLN ALA ARG ILE ASP SER GLY GLN GLN PRO VAL VAL SEQRES 38 A 750 GLY VAL ASN LYS TYR GLN VAL PRO GLU ASP HIS GLU ILE SEQRES 39 A 750 GLU VAL LEU LYS VAL GLU ASN SER ARG VAL ARG ALA GLU SEQRES 40 A 750 GLN LEU ALA LYS LEU GLN ARG LEU ARG ALA GLY ARG ASP SEQRES 41 A 750 GLU PRO ALA VAL ARG ALA ALA LEU ALA GLU LEU THR ARG SEQRES 42 A 750 ALA ALA ALA GLU GLN GLY ARG ALA GLY ALA ASP GLY LEU SEQRES 43 A 750 GLY ASN ASN LEU LEU ALA LEU ALA ILE ASP ALA ALA ARG SEQRES 44 A 750 ALA GLN ALA THR VAL GLY GLU ILE SER GLU ALA LEU GLU SEQRES 45 A 750 LYS VAL TYR GLY ARG HIS ARG ALA GLU ILE ARG THR ILE SEQRES 46 A 750 SER GLY VAL TYR ARG ASP GLU VAL GLY LYS ALA PRO ASN SEQRES 47 A 750 ILE ALA ALA ALA THR GLU LEU VAL GLU LYS PHE ALA GLU SEQRES 48 A 750 ALA ASP GLY ARG ARG PRO ARG ILE LEU ILE ALA LYS MET SEQRES 49 A 750 GLY GLN ASP GLY HIS ASP ARG GLY GLN LYS VAL ILE ALA SEQRES 50 A 750 THR ALA PHE ALA ASP ILE GLY PHE ASP VAL ASP VAL GLY SEQRES 51 A 750 SER LEU PHE SER THR PRO GLU GLU VAL ALA ARG GLN ALA SEQRES 52 A 750 ALA ASP ASN ASP VAL HIS VAL ILE GLY VAL SER SER LEU SEQRES 53 A 750 ALA ALA GLY HIS LEU THR LEU VAL PRO ALA LEU ARG ASP SEQRES 54 A 750 ALA LEU ALA GLN VAL GLY ARG PRO ASP ILE MET ILE VAL SEQRES 55 A 750 VAL GLY GLY VAL ILE PRO PRO GLY ASP PHE ASP GLU LEU SEQRES 56 A 750 TYR ALA ALA GLY ALA THR ALA ILE PHE PRO PRO GLY THR SEQRES 57 A 750 VAL ILE ALA ASP ALA ALA ILE ASP LEU LEU HIS ARG LEU SEQRES 58 A 750 ALA GLU ARG LEU GLY TYR THR LEU ASP
HELIX 1 1 GLU A 90 ALA A 103 1 14 HELIX 2 2 ILE A 126 ALA A 131 5 6 HELIX 3 3 GLY A 137 SER A 142 5 6 HELIX 4 4 THR A 156 ASN A 160 5 5 HELIX 5 5 THR A 173 GLY A 188 1 16 HELIX 6 6 ASP A 197 GLY A 203 1 7 HELIX 7 7 HIS A 208 VAL A 215 5 8 HELIX 8 8 SER A 224 PHE A 232 1 9 HELIX 9 9 ALA A 249 GLY A 265 1 17 HELIX 10 10 ALA A 267 LEU A 271 5 5 HELIX 11 11 ASP A 278 VAL A 285 1 8 HELIX 12 12 PRO A 292 MET A 311 1 20 HELIX 13 13 GLY A 321 GLY A 328 1 8 HELIX 14 14 THR A 330 ALA A 352 1 23 HELIX 15 15 ASP A 355 ALA A 360 1 6 HELIX 16 16 ASN A 372 GLN A 393 1 22 HELIX 17 17 SER A 398 SER A 403 5 6 HELIX 18 18 PHE A 421 GLY A 437 1 17 HELIX 19 19 THR A 455 GLU A 472 1 18 HELIX 20 20 SER A 485 HIS A 509 1 25 HELIX 21 21 GLY A 511 GLY A 519 1 9 HELIX 22 22 GLY A 519 SER A 538 1 20 HELIX 23 23 GLU A 563 ARG A 582 1 20 HELIX 24 24 ASP A 583 GLU A 600 1 18 HELIX 25 25 ASN A 612 ALA A 623 1 12 HELIX 26 26 THR A 626 GLY A 639 1 14 HELIX 27 27 VAL A 651 VAL A 656 1 6 HELIX 28 28 ALA A 659 GLY A 677 1 19 HELIX 29 29 ASP A 693 GLY A 707 1 15 HELIX 30 30 THR A 718 ASP A 730 1 13 HELIX 31 31 GLY A 742 VAL A 757 1 16 HELIX 32 32 PRO A 771 GLY A 773 5 3 HELIX 33 33 ASP A 774 GLY A 782 1 9 HELIX 34 34 VAL A 792 LEU A 808 1 17
SHEET 1 A 2 TRP A 113 HIS A 114 0 SHEET 2 A 2 ASP A 120 VAL A 121 -1 O VAL A 121 N TRP A 113 SHEET 1 B 9 PHE A 314 ASN A 315 0 SHEET 2 B 9 ALA A 272 ILE A 275 1 N GLY A 273 O ASN A 315 SHEET 3 B 9 SER A 241 MET A 244 1 N MET A 244 O THR A 274 SHEET 4 B 9 GLY A 191 VAL A 194 1 N VAL A 194 O SER A 243 SHEET 5 B 9 THR A 164 ALA A 169 1 N ILE A 165 O GLY A 191 SHEET 6 B 9 SER A 441 HIS A 443 1 O LEU A 442 N ARG A 166 SHEET 7 B 9 THR A 406 THR A 410 1 N THR A 410 O HIS A 443 SHEET 8 B 9 LEU A 363 ILE A 369 1 N PHE A 365 O HIS A 407 SHEET 9 B 9 ILE A 317 SER A 320 1 N ILE A 319 O SER A 364 SHEET 1 C 5 ASP A 709 VAL A 712 0 SHEET 2 C 5 ARG A 681 ALA A 685 1 N ILE A 684 O ASP A 711 SHEET 3 C 5 VAL A 733 SER A 738 1 O SER A 737 N ALA A 685 SHEET 4 C 5 MET A 763 GLY A 768 1 O GLY A 767 N SER A 738 SHEET 5 C 5 ALA A 783 PHE A 787 1 O THR A 784 N ILE A 764
CISPEP 1 PRO A 147 PRO A 148 0 2.16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000