10 20 30 40 50 60 70 80 1SDG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE (NAD(A)-CHOH(D)) 28-AUG-90 1SDG
TITLE MOLECULAR ASPECTS OF FUNCTIONAL DIFFERENCES BETWEEN ALCOHOL TITLE 2 AND SORBITOL DEHYDROGENASES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORBITOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.14; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1
KEYWDS OXIDOREDUCTASE (NAD(A)-CHOH(D))
EXPDTA THEORETICAL MODEL
AUTHOR H.EKLUND,E.HORJALES,H.JORNVALL,C.-I.BRANDEN,J.JEFFERY
REVDAT 3 01-APR-03 1SDG 1 JRNL REVDAT 2 15-OCT-94 1SDG 1 COMPND REVDAT 1 15-APR-92 1SDG 0
JRNL AUTH H.EKLUND,E.HORJALES,H.JORNVALL,C.I.BRANDEN, JRNL AUTH 2 J.JEFFERY JRNL TITL MOLECULAR ASPECTS OF FUNCTIONAL DIFFERENCES JRNL TITL 2 BETWEEN ALCOHOL AND SORBITOL DEHYDROGENASES. JRNL REF BIOCHEMISTRY V. 24 8005 1985 JRNL REFN ASTM BICHAW US ISSN 0006-2960
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1SDG COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 5 REMARK 5 THERE IS A CIS-PEPTIDE BOND BETWEEN LYS 60 AND LYS 61.
REMARK 6 REMARK 6 THERE ARE POSSIBLE CHIRALITY ERRORS AT THE FOLLOWING REMARK 6 ALPHA-CARBON CENTERS - TRP 53, VAL 59, ILE 172, LYS 254, REMARK 6 AND TRP 328.
REMARK 7 REMARK 7 CORRECTION. REVISE THEORETICAL MODEL INFORMATION ON COMPND REMARK 7 RECORD. 15-OCT-94.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O ALA A 183 CB ALA A 187 1.82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 182 CA - CB - CG ANGL. DEV. =-15.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 97 -102.32 -151.41 REMARK 500 THR A 139 151.17 119.16 REMARK 500 ASP A 162 -23.91 145.83 REMARK 500 VAL A 304 108.75 142.59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 60 LYS A 61 142.53
DBREF 1SDG A 4 374 UNP P07846 DHSO_SHEEP 1 347
SEQRES 1 A 347 ALA LYS PRO ALA ALA GLU ASN LEU SER LEU VAL VAL HIS SEQRES 2 A 347 GLY PRO GLY ASP LEU ARG LEU GLU ASN TYR PRO ILE PRO SEQRES 3 A 347 GLU PRO GLY PRO ASN GLU VAL LEU LEU LYS MET HIS SER SEQRES 4 A 347 VAL GLY ILE CYS GLY SER ASP VAL HIS TYR TRP GLN GLY SEQRES 5 A 347 ARG ILE GLY ASP PHE VAL VAL LYS LYS PRO MET VAL LEU SEQRES 6 A 347 GLY HIS GLU ALA SER GLY THR VAL VAL LYS VAL GLY SER SEQRES 7 A 347 LEU VAL ARG HIS LEU GLN PRO GLY ASP ARG VAL ALA ILE SEQRES 8 A 347 GLN PRO GLY ALA PRO ARG GLN THR ASP GLU PHE CYS LYS SEQRES 9 A 347 ILE GLY ARG TYR ASN LEU SER PRO THR ILE PHE PHE CYS SEQRES 10 A 347 ALA THR PRO PRO ASP ASP GLY ASN LEU CYS ARG PHE TYR SEQRES 11 A 347 LYS HIS ASN ALA ASN PHE CYS TYR LYS LEU PRO ASP ASN SEQRES 12 A 347 VAL THR PHE GLU GLU GLY ALA LEU ILE GLU PRO LEU SER SEQRES 13 A 347 VAL GLY ILE HIS ALA CYS ARG ARG ALA GLY VAL THR LEU SEQRES 14 A 347 GLY ASN LYS VAL LEU VAL CYS GLY ALA GLY PRO ILE GLY SEQRES 15 A 347 LEU VAL ASN LEU LEU ALA ALA LYS ALA MET GLY ALA ALA SEQRES 16 A 347 GLN VAL VAL VAL THR ASP LEU SER ALA SER ARG LEU SER SEQRES 17 A 347 LYS ALA LYS GLU VAL GLY ALA ASP PHE ILE LEU GLU ILE SEQRES 18 A 347 SER ASN GLU SER PRO GLU GLU ILE ALA LYS LYS VAL GLU SEQRES 19 A 347 GLY LEU LEU GLY SER LYS PRO GLU VAL THR ILE GLU CYS SEQRES 20 A 347 THR GLY VAL GLU THR SER ILE GLN ALA GLY ILE TYR ALA SEQRES 21 A 347 THR HIS SER GLY GLY THR LEU VAL LEU VAL GLY LEU GLY SEQRES 22 A 347 SER GLU MET THR SER VAL PRO LEU VAL HIS ALA ALA THR SEQRES 23 A 347 ARG GLU VAL ASP ILE LYS GLY VAL PHE ARG TYR CYS ASN SEQRES 24 A 347 THR TRP PRO MET ALA ILE SER MET LEU ALA SER LYS SER SEQRES 25 A 347 VAL ASN VAL LYS PRO LEU VAL THR HIS ARG PHE PRO LEU SEQRES 26 A 347 GLU LYS ALA LEU GLU ALA PHE GLU THR SER LYS LYS GLY SEQRES 27 A 347 LEU GLY LEU LYS VAL MET ILE LYS CYS
FTNOTE 1 RESIDUE PRO 62 IS A CIS PROLINE. FTNOTE 2 THERE IS A CIS-PEPTIDE BOND BETWEEN LYS 60 AND LYS 61. FTNOTE 3 THERE ARE POSSIBLE CHIRALITY ERRORS AT THE FOLLOWING ALPHA- FTNOTE 3 CARBON CENTERS - TRP 53, VAL 59, ILE 172, LYS 254, AND TRP FTNOTE 3 328.
HET SOR 376 12 HET ZN 375 1 HET NAD 377 44
HETNAM SOR D-SORBITOL HETNAM ZN ZINC ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 2 SOR C6 H14 O6 FORMUL 3 ZN ZN 2+ FORMUL 4 NAD C21 H27 N7 O14 P2
HELIX 1 1 CYS A 46 GLY A 55 1 10 HELIX 2 2 ASP A 100 LYS A 104 5 5 HELIX 3 3 GLU A 168 ILE A 172 5 5 HELIX 4 4 GLU A 174 ARG A 186 1 12 HELIX 5 5 GLY A 201 MET A 214 1 14 HELIX 6 6 SER A 225 SER A 227 5 3 HELIX 7 7 ARG A 228 VAL A 235 1 8 HELIX 8 8 GLU A 242 GLU A 246 5 5 HELIX 9 9 GLU A 249 LEU A 258 1 10 HELIX 10 10 GLY A 271 TYR A 281 1 11 HELIX 11 11 ARG A 323 SER A 337 1 15 HELIX 12 12 VAL A 342 PRO A 344 5 3 HELIX 13 13 LYS A 354 LYS A 363 1 10
SHEET 1 A 3 ARG A 22 ILE A 28 0 SHEET 2 A 3 ALA A 7 VAL A 14 -1 O ALA A 7 N ILE A 28 SHEET 3 A 3 MET A 63 VAL A 64 -1 O MET A 63 N VAL A 14 SHEET 1 B 5 CYS A 157 LYS A 159 0 SHEET 2 B 5 ARG A 88 ILE A 91 -1 N ALA A 90 O TYR A 158 SHEET 3 B 5 ALA A 69 VAL A 76 -1 O ALA A 69 N ILE A 91 SHEET 4 B 5 GLU A 35 GLY A 44 -1 N LEU A 37 O LYS A 75 SHEET 5 B 5 LYS A 151 ASN A 153 -1 O HIS A 152 N VAL A 36 SHEET 1 C 6 CYS A 157 LYS A 159 0 SHEET 2 C 6 ARG A 88 ILE A 91 -1 N ALA A 90 O TYR A 158 SHEET 3 C 6 ALA A 69 VAL A 76 -1 O ALA A 69 N ILE A 91 SHEET 4 C 6 GLU A 35 GLY A 44 -1 N LEU A 37 O LYS A 75 SHEET 5 C 6 LYS A 369 LYS A 373 -1 O ILE A 372 N VAL A 43 SHEET 6 C 6 VAL A 346 HIS A 348 1 N THR A 347 O LYS A 369 SHEET 1 D 6 PHE A 239 LEU A 241 0 SHEET 2 D 6 GLN A 218 THR A 222 1 O VAL A 219 N PHE A 239 SHEET 3 D 6 LYS A 194 CYS A 198 1 N VAL A 195 O GLN A 218 SHEET 4 D 6 GLU A 264 ILE A 267 1 O GLU A 264 N LEU A 196 SHEET 5 D 6 THR A 288 LEU A 291 1 O THR A 288 N VAL A 265 SHEET 6 D 6 ARG A 314 VAL A 316 1 O GLU A 315 N LEU A 291
CISPEP 1 LYS A 61 PRO A 62 0 4.13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000