10 20 30 40 50 60 70 80 1S4M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 16-JAN-04 1S4M
TITLE CRYSTAL STRUCTURE OF FLAVIN BINDING TO FAD SYNTHETASE FROM TITLE 2 THERMOTOGA MARITINA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS FAD, FLAVIN, RIBOFLAVIN KINASE, STRUCTURAL GENOMICS, BSGC KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 BERKELEY STRUCTURAL GENOMICS CENTER, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR W.WANG,R.KIM,H.YOKOTA,S.-H.KIM,BERKELEY STRUCTURAL GENOMICS AUTHOR 2 CENTER (BSGC)
REVDAT 4 24-FEB-09 1S4M 1 VERSN REVDAT 3 08-MAR-05 1S4M 1 AUTHOR KEYWDS REMARK REVDAT 2 18-JAN-05 1S4M 1 JRNL REVDAT 1 19-OCT-04 1S4M 0
JRNL AUTH W.WANG,R.KIM,H.YOKOTA,S.-H.KIM JRNL TITL CRYSTAL STRUCTURE OF FLAVIN BINDING TO FAD JRNL TITL 2 SYNTHETASE OF THERMOTOGA MARITIMA JRNL REF PROTEINS V. 58 246 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15468322 JRNL DOI 10.1002/PROT.20207
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 36346 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3656 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4450 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.01 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1S4M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021360.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DCS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 4000, GLYCEROL, REMARK 280 PROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 300K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.08150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 169 REMARK 465 ARG A 170 REMARK 465 GLU A 171 REMARK 465 PHE A 172 REMARK 465 GLY A 173 REMARK 465 ARG A 174 REMARK 465 LYS A 175 REMARK 465 LEU A 176 REMARK 465 GLY A 177 REMARK 465 VAL A 222 REMARK 465 GLY A 223 REMARK 465 PHE A 289 REMARK 465 GLU A 290 REMARK 465 LYS A 291 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 ASP B 469 REMARK 465 ARG B 470 REMARK 465 GLU B 471 REMARK 465 PHE B 472 REMARK 465 GLY B 473 REMARK 465 ARG B 474 REMARK 465 LYS B 475 REMARK 465 LEU B 476 REMARK 465 GLY B 477 REMARK 465 ARG B 519 REMARK 465 PRO B 520 REMARK 465 THR B 521 REMARK 465 VAL B 522 REMARK 465 GLY B 523 REMARK 465 ASP B 524 REMARK 465 ALA B 525 REMARK 465 ARG B 526 REMARK 465 GLU B 590 REMARK 465 LYS B 591 REMARK 465 GLU B 592 REMARK 465 GLY B 593
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 816 O HOH B 822 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 224 CA - C - N ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 131 60.69 35.91 REMARK 500 HIS A 167 -99.74 71.41 REMARK 500 PRO A 220 -89.63 -16.97 REMARK 500 ALA A 225 -66.36 -138.08 REMARK 500 ARG A 226 24.04 -61.27 REMARK 500 ASP A 261 57.64 -104.15 REMARK 500 SER A 262 133.62 97.91 REMARK 500 ILE A 263 48.57 -17.29 REMARK 500 GLU A 264 -51.96 -154.20 REMARK 500 SER A 287 32.94 -77.51 REMARK 500 HIS B 467 136.64 88.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 36 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 768 DISTANCE = 5.02 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 295 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 739 O REMARK 620 2 HOH A 738 O 167.4 REMARK 620 3 HOH A 741 O 84.1 97.6 REMARK 620 4 HOH A 740 O 91.0 92.5 154.7 REMARK 620 5 GLY A 119 O 96.6 96.1 83.1 72.8 REMARK 620 6 HOH B 652 O 91.5 77.8 67.2 137.9 148.3 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 295 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LUM A 294 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LUM B 594
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MRZ RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: BSGCAIR30409 RELATED DB: TARGETDB
DBREF 1S4M A 1 293 UNP Q9WZW1 Q9WZW1_THEMA 1 293 DBREF 1S4M B 301 593 UNP Q9WZW1 Q9WZW1_THEMA 1 293
SEQRES 1 A 293 MET VAL VAL SER ILE GLY VAL PHE ASP GLY VAL HIS ILE SEQRES 2 A 293 GLY HIS GLN LYS VAL LEU ARG THR MET LYS GLU ILE ALA SEQRES 3 A 293 PHE PHE ARG LYS ASP ASP SER LEU ILE TYR THR ILE SER SEQRES 4 A 293 TYR PRO PRO GLU TYR PHE LEU PRO ASP PHE PRO GLY LEU SEQRES 5 A 293 LEU MET THR VAL GLU SER ARG VAL GLU MET LEU SER ARG SEQRES 6 A 293 TYR ALA ARG THR VAL VAL LEU ASP PHE PHE ARG ILE LYS SEQRES 7 A 293 ASP LEU THR PRO GLU GLY PHE VAL GLU ARG TYR LEU SER SEQRES 8 A 293 GLY VAL SER ALA VAL VAL VAL GLY ARG ASP PHE ARG PHE SEQRES 9 A 293 GLY LYS ASN ALA SER GLY ASN ALA SER PHE LEU ARG LYS SEQRES 10 A 293 LYS GLY VAL GLU VAL TYR GLU ILE GLU ASP VAL VAL VAL SEQRES 11 A 293 GLN GLY LYS ARG VAL SER SER SER LEU ILE ARG ASN LEU SEQRES 12 A 293 VAL GLN GLU GLY ARG VAL GLU GLU ILE PRO ALA TYR LEU SEQRES 13 A 293 GLY ARG TYR PHE GLU ILE GLU GLY ILE VAL HIS LYS ASP SEQRES 14 A 293 ARG GLU PHE GLY ARG LYS LEU GLY PHE PRO THR ALA ASN SEQRES 15 A 293 ILE ASP ARG GLY ASN GLU LYS LEU VAL ASP LEU LYS ARG SEQRES 16 A 293 GLY VAL TYR LEU VAL ARG VAL HIS LEU PRO ASP GLY LYS SEQRES 17 A 293 LYS LYS PHE GLY VAL MET ASN VAL GLY PHE ARG PRO THR SEQRES 18 A 293 VAL GLY ASP ALA ARG ASN VAL LYS TYR GLU VAL TYR ILE SEQRES 19 A 293 LEU ASP PHE GLU GLY ASP LEU TYR GLY GLN ARG LEU LYS SEQRES 20 A 293 LEU GLU VAL LEU LYS PHE MET ARG ASP GLU LYS LYS PHE SEQRES 21 A 293 ASP SER ILE GLU GLU LEU LYS ALA ALA ILE ASP GLN ASP SEQRES 22 A 293 VAL LYS SER ALA ARG ASN MET ILE ASP ASP ILE ILE ASN SEQRES 23 A 293 SER LYS PHE GLU LYS GLU GLY SEQRES 1 B 293 MET VAL VAL SER ILE GLY VAL PHE ASP GLY VAL HIS ILE SEQRES 2 B 293 GLY HIS GLN LYS VAL LEU ARG THR MET LYS GLU ILE ALA SEQRES 3 B 293 PHE PHE ARG LYS ASP ASP SER LEU ILE TYR THR ILE SER SEQRES 4 B 293 TYR PRO PRO GLU TYR PHE LEU PRO ASP PHE PRO GLY LEU SEQRES 5 B 293 LEU MET THR VAL GLU SER ARG VAL GLU MET LEU SER ARG SEQRES 6 B 293 TYR ALA ARG THR VAL VAL LEU ASP PHE PHE ARG ILE LYS SEQRES 7 B 293 ASP LEU THR PRO GLU GLY PHE VAL GLU ARG TYR LEU SER SEQRES 8 B 293 GLY VAL SER ALA VAL VAL VAL GLY ARG ASP PHE ARG PHE SEQRES 9 B 293 GLY LYS ASN ALA SER GLY ASN ALA SER PHE LEU ARG LYS SEQRES 10 B 293 LYS GLY VAL GLU VAL TYR GLU ILE GLU ASP VAL VAL VAL SEQRES 11 B 293 GLN GLY LYS ARG VAL SER SER SER LEU ILE ARG ASN LEU SEQRES 12 B 293 VAL GLN GLU GLY ARG VAL GLU GLU ILE PRO ALA TYR LEU SEQRES 13 B 293 GLY ARG TYR PHE GLU ILE GLU GLY ILE VAL HIS LYS ASP SEQRES 14 B 293 ARG GLU PHE GLY ARG LYS LEU GLY PHE PRO THR ALA ASN SEQRES 15 B 293 ILE ASP ARG GLY ASN GLU LYS LEU VAL ASP LEU LYS ARG SEQRES 16 B 293 GLY VAL TYR LEU VAL ARG VAL HIS LEU PRO ASP GLY LYS SEQRES 17 B 293 LYS LYS PHE GLY VAL MET ASN VAL GLY PHE ARG PRO THR SEQRES 18 B 293 VAL GLY ASP ALA ARG ASN VAL LYS TYR GLU VAL TYR ILE SEQRES 19 B 293 LEU ASP PHE GLU GLY ASP LEU TYR GLY GLN ARG LEU LYS SEQRES 20 B 293 LEU GLU VAL LEU LYS PHE MET ARG ASP GLU LYS LYS PHE SEQRES 21 B 293 ASP SER ILE GLU GLU LEU LYS ALA ALA ILE ASP GLN ASP SEQRES 22 B 293 VAL LYS SER ALA ARG ASN MET ILE ASP ASP ILE ILE ASN SEQRES 23 B 293 SER LYS PHE GLU LYS GLU GLY
HET MG A 295 1 HET LUM A 294 18 HET LUM B 594 18
HETNAM MG MAGNESIUM ION HETNAM LUM LUMICHROME
HETSYN LUM 7,8-DIMETHYLALLOXAZINE; 6,7-DIMETHYLALLOXAZINE
FORMUL 3 MG MG 2+ FORMUL 4 LUM 2(C12 H10 N4 O2) FORMUL 6 HOH *228(H2 O)
HELIX 1 1 HIS A 12 LYS A 30 1 19 HELIX 2 2 PRO A 41 LEU A 46 5 6 HELIX 3 3 THR A 55 SER A 64 1 10 HELIX 4 4 ASP A 73 LYS A 78 1 6 HELIX 5 5 THR A 81 LEU A 90 1 10 HELIX 6 6 GLY A 105 SER A 109 5 5 HELIX 7 7 ASN A 111 LYS A 118 1 8 HELIX 8 8 SER A 136 GLU A 146 1 11 HELIX 9 9 ILE A 152 GLY A 157 1 6 HELIX 10 10 PRO A 205 GLY A 207 5 3 HELIX 11 11 GLU A 264 SER A 287 1 24 HELIX 12 12 HIS B 312 LYS B 330 1 19 HELIX 13 13 PRO B 341 LEU B 346 5 6 HELIX 14 14 THR B 355 SER B 364 1 10 HELIX 15 15 ASP B 373 LEU B 380 1 8 HELIX 16 16 THR B 381 LEU B 390 1 10 HELIX 17 17 GLY B 405 SER B 409 5 5 HELIX 18 18 ASN B 411 LYS B 418 1 8 HELIX 19 19 SER B 436 GLU B 446 1 11 HELIX 20 20 ILE B 452 GLY B 457 1 6 HELIX 21 21 SER B 562 SER B 587 1 26
SHEET 1 A 5 THR A 69 LEU A 72 0 SHEET 2 A 5 SER A 33 ILE A 38 1 N ILE A 35 O VAL A 70 SHEET 3 A 5 VAL A 2 GLY A 6 1 N SER A 4 O TYR A 36 SHEET 4 A 5 ALA A 95 GLY A 99 1 O VAL A 97 N ILE A 5 SHEET 5 A 5 GLU A 121 ILE A 125 1 O TYR A 123 N VAL A 96 SHEET 1 B 2 VAL A 129 VAL A 130 0 SHEET 2 B 2 LYS A 133 ARG A 134 -1 O LYS A 133 N VAL A 130 SHEET 1 C 7 GLU A 161 VAL A 166 0 SHEET 2 C 7 ALA A 181 ASP A 184 -1 O ASP A 184 N ILE A 165 SHEET 3 C 7 VAL A 228 ILE A 234 -1 O TYR A 230 N ILE A 183 SHEET 4 C 7 LYS A 209 PHE A 218 -1 N VAL A 213 O TYR A 233 SHEET 5 C 7 GLY A 196 HIS A 203 -1 N VAL A 202 O LYS A 210 SHEET 6 C 7 ARG A 245 ARG A 255 -1 O ARG A 255 N VAL A 197 SHEET 7 C 7 GLU A 161 VAL A 166 -1 N ILE A 162 O LEU A 248 SHEET 1 D 5 THR B 369 LEU B 372 0 SHEET 2 D 5 SER B 333 ILE B 338 1 N ILE B 335 O VAL B 370 SHEET 3 D 5 VAL B 302 GLY B 306 1 N SER B 304 O TYR B 336 SHEET 4 D 5 ALA B 395 GLY B 399 1 O ALA B 395 N VAL B 303 SHEET 5 D 5 GLU B 421 ILE B 425 1 O GLU B 421 N VAL B 396 SHEET 1 E 2 VAL B 429 VAL B 430 0 SHEET 2 E 2 LYS B 433 ARG B 434 -1 O LYS B 433 N VAL B 430 SHEET 1 F 7 GLU B 461 VAL B 466 0 SHEET 2 F 7 ALA B 481 ASP B 484 -1 O ASP B 484 N ILE B 465 SHEET 3 F 7 LYS B 529 ILE B 534 -1 O TYR B 530 N ILE B 483 SHEET 4 F 7 LYS B 509 GLY B 517 -1 N ASN B 515 O GLU B 531 SHEET 5 F 7 GLY B 496 HIS B 503 -1 N VAL B 502 O LYS B 510 SHEET 6 F 7 ARG B 545 ARG B 555 -1 O MET B 554 N VAL B 497 SHEET 7 F 7 GLU B 461 VAL B 466 -1 N ILE B 462 O LEU B 548
LINK MG MG A 295 O HOH A 739 1555 1555 2.34 LINK MG MG A 295 O HOH A 738 1555 1555 2.21 LINK MG MG A 295 O HOH A 741 1555 1555 2.16 LINK MG MG A 295 O HOH A 740 1555 1555 2.43 LINK MG MG A 295 O GLY A 119 1555 1555 2.46 LINK MG MG A 295 O HOH B 652 1555 1454 2.68
SITE 1 AC1 6 GLY A 119 HOH A 738 HOH A 739 HOH A 740 SITE 2 AC1 6 HOH A 741 HOH B 652 SITE 1 AC2 9 VAL A 197 VAL A 213 ASN A 215 ARG A 255 SITE 2 AC2 9 GLU A 257 LYS A 258 PHE A 260 ASP A 273 SITE 3 AC2 9 ILE B 563 SITE 1 AC3 10 VAL B 497 VAL B 513 ASN B 515 ARG B 555 SITE 2 AC3 10 GLU B 557 LYS B 558 PHE B 560 LEU B 566 SITE 3 AC3 10 ILE B 570 ASP B 573
CRYST1 66.093 82.163 66.754 90.00 116.57 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015130 0.000000 0.007567 0.00000
SCALE2 0.000000 0.012171 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016749 0.00000