10 20 30 40 50 60 70 80 1RYK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-03 1RYK
TITLE SOLUTION NMR STRUCTURE PROTEIN YJBJ FROM ESCHERICHIA COLI. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET93; TITLE 3 ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET TITLE 4 EC0298_1_69;
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YJBJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YJBJ, B4045, Z5644, ECS5028, SF4160, S3571; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS ALPHA PROTEIN, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, OCSP, NESG, PSI, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.PINEDA-LUCENA,J.LIAO,B.WU,A.YEE,J.R.CORT,M.A.KENNEDY, AUTHOR 2 A.M.EDWARDS,C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG)
REVDAT 4 24-FEB-09 1RYK 1 VERSN REVDAT 3 25-JAN-05 1RYK 1 AUTHOR KEYWDS REVDAT 2 12-OCT-04 1RYK 1 KEYWDS TITLE REMARK REVDAT 1 24-FEB-04 1RYK 0
SPRSDE 24-FEB-04 1RYK 1JYG
JRNL AUTH A.PINEDA-LUCENA,J.LIAO,B.WU,A.YEE,J.R.CORT, JRNL AUTH 2 M.A.KENNEDY,A.M.EDWARDS,C.H.ARROWSMITH JRNL TITL AN NMR APPROACH TO STRUCTURAL PROTEOMICS. JRNL REF PROTEINS V. 47 572 2002 JRNL REFN ISSN 0887-3585 JRNL PMID 11854485 JRNL DOI 10.1002/PROT.10120.ABS
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2036 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 101 DIHEDRAL ANGLE CONSTRAINTS, 62 HYDROGEN BONDS
REMARK 4 REMARK 4 1RYK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021152.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, REMARK 210 RESTRAINED MOLECULAR DYNAMIC REMARK 210 SIMULATIONS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 39.21 -93.05 REMARK 500 1 TRP A 21 -75.75 -94.82 REMARK 500 1 GLU A 33 -60.03 65.44 REMARK 500 1 ASN A 65 -66.89 -103.57 REMARK 500 1 GLU A 66 -1.80 78.04 REMARK 500 2 TRP A 21 -76.28 -102.27 REMARK 500 2 ILE A 32 -70.39 -71.72 REMARK 500 2 GLU A 33 -58.32 66.83 REMARK 500 2 GLU A 66 -1.71 83.85 REMARK 500 3 TRP A 21 -60.77 -105.57 REMARK 500 3 GLU A 33 -60.57 63.82 REMARK 500 3 GLU A 66 -44.44 78.29 REMARK 500 4 ALA A 6 144.98 66.75 REMARK 500 4 TRP A 21 -75.65 -102.46 REMARK 500 4 GLU A 33 -52.01 58.25 REMARK 500 4 ASN A 65 -61.87 -102.93 REMARK 500 4 GLU A 66 -17.93 71.70 REMARK 500 4 ARG A 68 -19.44 -147.36 REMARK 500 5 GLU A 33 -59.91 67.48 REMARK 500 5 GLU A 66 -46.16 78.90 REMARK 500 5 TYR A 67 108.87 -54.62 REMARK 500 5 ARG A 68 -51.47 172.94 REMARK 500 6 GLU A 33 -58.31 66.75 REMARK 500 6 GLU A 66 -2.52 87.49 REMARK 500 6 ARG A 68 -39.10 -157.77 REMARK 500 7 TRP A 21 -76.43 -94.69 REMARK 500 7 ILE A 32 -77.31 -82.33 REMARK 500 7 GLU A 33 -59.73 66.08 REMARK 500 7 GLU A 66 -44.11 78.91 REMARK 500 7 ARG A 68 -75.92 -168.78 REMARK 500 8 GLU A 33 -58.51 67.59 REMARK 500 8 GLU A 66 -31.46 80.36 REMARK 500 8 ARG A 68 -20.95 -148.95 REMARK 500 9 GLU A 33 -58.25 66.03 REMARK 500 9 ASN A 65 -71.52 -104.63 REMARK 500 9 GLU A 66 -3.42 73.31 REMARK 500 9 ARG A 68 -39.11 -154.68 REMARK 500 10 ILE A 32 -71.90 -85.68 REMARK 500 10 GLU A 33 -57.89 50.26 REMARK 500 10 GLU A 66 -1.37 80.56 REMARK 500 10 ARG A 68 -81.13 -139.11 REMARK 500 11 ALA A 6 91.65 -66.64 REMARK 500 11 TRP A 21 -74.62 -113.75 REMARK 500 11 GLU A 33 -57.95 65.58 REMARK 500 11 GLU A 66 -25.53 92.80 REMARK 500 12 ALA A 6 96.28 -48.33 REMARK 500 12 GLN A 20 -63.25 -90.17 REMARK 500 12 THR A 25 -167.35 -127.33 REMARK 500 12 ILE A 32 -81.21 -90.06 REMARK 500 12 GLU A 33 -47.95 54.20 REMARK 500 12 GLU A 66 -27.08 75.13 REMARK 500 12 TYR A 67 94.00 -65.93 REMARK 500 12 ARG A 68 -55.47 -164.76 REMARK 500 13 GLU A 33 -59.06 -27.90 REMARK 500 13 GLU A 66 -44.32 85.23 REMARK 500 14 TRP A 21 -55.31 -125.19 REMARK 500 14 GLU A 33 -59.24 64.83 REMARK 500 14 GLU A 66 -1.41 79.20 REMARK 500 15 ALA A 6 87.49 -64.30 REMARK 500 15 TRP A 21 -55.80 -122.95 REMARK 500 15 GLU A 66 -38.11 81.19 REMARK 500 15 ARG A 68 -43.74 -179.07 REMARK 500 16 ALA A 6 27.84 -161.74 REMARK 500 16 TRP A 21 -74.34 -83.76 REMARK 500 16 GLU A 33 -58.60 68.87 REMARK 500 16 GLU A 66 -35.81 86.48 REMARK 500 17 ALA A 6 -70.58 63.77 REMARK 500 17 GLU A 33 -60.20 47.37 REMARK 500 17 GLU A 66 -12.08 76.85 REMARK 500 18 GLU A 33 -58.66 -28.08 REMARK 500 18 ASN A 65 -61.89 -103.84 REMARK 500 18 GLU A 66 -32.76 88.04 REMARK 500 18 ARG A 68 2.71 -156.09 REMARK 500 19 TRP A 21 -70.29 -114.94 REMARK 500 19 GLU A 66 -41.63 79.58 REMARK 500 20 THR A 25 -167.46 -106.11 REMARK 500 20 GLU A 33 -59.84 69.00 REMARK 500 20 GLU A 66 -0.52 75.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5105 RELATED DB: BMRB REMARK 900 RELATED ID: 1JYG RELATED DB: PDB REMARK 900 RELATED ID: ET93 RELATED DB: TARGETDB
DBREF 1RYK A 1 69 UNP P68206 YJBJ_ECOLI 1 69
SEQRES 1 A 69 MET ASN LYS ASP GLU ALA GLY GLY ASN TRP LYS GLN PHE SEQRES 2 A 69 LYS GLY LYS VAL LYS GLU GLN TRP GLY LYS LEU THR ASP SEQRES 3 A 69 ASP ASP MET THR ILE ILE GLU GLY LYS ARG ASP GLN LEU SEQRES 4 A 69 VAL GLY LYS ILE GLN GLU ARG TYR GLY TYR GLN LYS ASP SEQRES 5 A 69 GLN ALA GLU LYS GLU VAL VAL ASP TRP GLU THR ARG ASN SEQRES 6 A 69 GLU TYR ARG TRP
HELIX 1 1 GLY A 8 TRP A 21 1 14 HELIX 2 2 THR A 25 GLU A 33 1 9 HELIX 3 3 LYS A 35 TYR A 47 1 13 HELIX 4 4 GLN A 50 GLU A 66 1 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000