10 20 30 40 50 60 70 80 1RUT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 11-DEC-03 1RUT
TITLE COMPLEX OF LMO4 LIM DOMAINS 1 AND 2 WITH THE LDB1 LID DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN OF LMO4 PROTEIN AND LIM DOMAIN- COMPND 3 BINDING PROTEIN 1; COMPND 4 CHAIN: X; COMPND 5 SYNONYM: FLINC4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: FUSION OF LMO4 RESIDUES 16-152 TO LDB1 LID COMPND 9 RESIDUES 300-339 VIA A FLEXIBLE LINKER WITH SEQUENCE COMPND 10 GGSGGSGGSGG
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LMO4, LDB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T
KEYWDS B-TANDEM ZIPPER, LIM DOMAIN, FUSION PROTEIN, PROTEIN BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR J.E.DEANE,D.P.RYAN,M.J.MAHER,A.H.Y.KWAN,M.BACCA,J.P.MACKAY, AUTHOR 2 J.M.GUSS,J.E.VISVADER,J.M.MATTHEWS
REVDAT 2 24-FEB-09 1RUT 1 VERSN REVDAT 1 12-OCT-04 1RUT 0
JRNL AUTH J.E.DEANE,D.P.RYAN,M.SUNDE,M.J.MAHER,J.M.GUSS, JRNL AUTH 2 J.E.VISVADER,J.M.MATTHEWS JRNL TITL TANDEM LIM DOMAINS PROVIDE SYNERGISTIC BINDING IN JRNL TITL 2 THE LMO4:LDB1 COMPLEX JRNL REF EMBO J. V. 23 3589 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15343268 JRNL DOI 10.1038/SJ.EMBOJ.7600376
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.E.DEANE,M.J.MAHER,D.B.LANGLEY,S.C.GRAHAM, REMARK 1 AUTH 2 J.E.VISVADER,J.M.GUSS,J.M.MATTHEWS REMARK 1 TITL CRYSTALLIZATION OF FLINC4, AN INTRAMOLECULAR REMARK 1 TITL 2 LMO4-LDB1 COMPLEX REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 1484 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12876360 REMARK 1 DOI 10.1107/S0907444903011843
REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 43146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.536 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1275 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1112 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1718 ; 1.242 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2594 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 6.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 181 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1453 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 221 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1285 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 798 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.101 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.029 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.272 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 791 ; 3.824 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1266 ; 4.959 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 484 ; 5.181 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 452 ; 6.550 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1275 ; 1.382 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 198 ;10.447 ; 8.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1250 ; 8.019 ; 8.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1RUT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021052.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08, 1.282, 1.170, 1.283 REMARK 200 MONOCHROMATOR : SI (111) ASYMMETRIC CUT, REMARK 200 HORIZONTAL FOCUS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -Y,-X,-Z REMARK 290 5555 -X+Y,Y,-Z REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 687 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 16 REMARK 465 SER X 17 REMARK 465 LEU X 18 REMARK 465 ASN X 147 REMARK 465 GLY X 148 REMARK 465 HIS X 149 REMARK 465 LEU X 150 REMARK 465 ASN X 151 REMARK 465 SER X 152 REMARK 465 GLY X 201 REMARK 465 GLY X 202 REMARK 465 SER X 203 REMARK 465 GLY X 204 REMARK 465 GLY X 205 REMARK 465 SER X 206 REMARK 465 GLY X 207 REMARK 465 GLY X 208 REMARK 465 SER X 209 REMARK 465 GLY X 210 REMARK 465 THR X 328 REMARK 465 GLN X 329 REMARK 465 PHE X 330 REMARK 465 ASP X 331 REMARK 465 ALA X 332 REMARK 465 ALA X 333 REMARK 465 ASN X 334 REMARK 465 GLY X 335 REMARK 465 ILE X 336 REMARK 465 ASP X 337 REMARK 465 ASP X 338 REMARK 465 GLU X 339
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 47 SG REMARK 620 2 CYS X 26 SG 115.3 REMARK 620 3 CYS X 23 SG 110.4 111.2 REMARK 620 4 HIS X 44 ND1 113.8 100.6 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 50 SG REMARK 620 2 ASP X 76 OD2 108.0 REMARK 620 3 CYS X 53 SG 110.2 100.0 REMARK 620 4 CYS X 73 SG 115.1 104.1 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 137 SG REMARK 620 2 ASP X 140 OD2 104.9 REMARK 620 3 CYS X 118 SG 119.6 101.6 REMARK 620 4 CYS X 115 SG 113.7 108.2 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 87 SG REMARK 620 2 HIS X 109 ND1 101.7 REMARK 620 3 CYS X 112 SG 114.0 113.8 REMARK 620 4 CYS X 90 SG 109.7 99.6 116.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 602 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 603 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 604
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M3V RELATED DB: PDB REMARK 900 COMPLEX OF LMO4 LIM1 DOMAIN WITH LDB1 LID DOMAIN
DBREF 1RUT X 16 152 GB 13097522 AAH03488 16 152 DBREF 1RUT X 300 339 UNP P70662 LDB1_MOUSE 300 339
SEQADV 1RUT SER X 52 GB 13097522 CYS 52 ENGINEERED SEQADV 1RUT SER X 64 GB 13097522 CYS 64 ENGINEERED SEQADV 1RUT GLY X 201 GB 13097522 LINKER SEQADV 1RUT GLY X 202 GB 13097522 LINKER SEQADV 1RUT SER X 203 GB 13097522 LINKER SEQADV 1RUT GLY X 204 GB 13097522 LINKER SEQADV 1RUT GLY X 205 GB 13097522 LINKER SEQADV 1RUT SER X 206 GB 13097522 LINKER SEQADV 1RUT GLY X 207 GB 13097522 LINKER SEQADV 1RUT GLY X 208 GB 13097522 LINKER SEQADV 1RUT SER X 209 GB 13097522 LINKER SEQADV 1RUT GLY X 210 GB 13097522 LINKER SEQADV 1RUT GLY X 211 GB 13097522 LINKER
SEQRES 1 X 188 GLY SER LEU SER TRP LYS ARG CYS ALA GLY CYS GLY GLY SEQRES 2 X 188 LYS ILE ALA ASP ARG PHE LEU LEU TYR ALA MET ASP SER SEQRES 3 X 188 TYR TRP HIS SER ARG CYS LEU LYS CYS SER SER CYS GLN SEQRES 4 X 188 ALA GLN LEU GLY ASP ILE GLY THR SER SER TYR THR LYS SEQRES 5 X 188 SER GLY MET ILE LEU CYS ARG ASN ASP TYR ILE ARG LEU SEQRES 6 X 188 PHE GLY ASN SER GLY ALA CYS SER ALA CYS GLY GLN SER SEQRES 7 X 188 ILE PRO ALA SER GLU LEU VAL MET ARG ALA GLN GLY ASN SEQRES 8 X 188 VAL TYR HIS LEU LYS CYS PHE THR CYS SER THR CYS ARG SEQRES 9 X 188 ASN ARG LEU VAL PRO GLY ASP ARG PHE HIS TYR ILE ASN SEQRES 10 X 188 GLY SER LEU PHE CYS GLU HIS ASP ARG PRO THR ALA LEU SEQRES 11 X 188 ILE ASN GLY HIS LEU ASN SER GLY GLY SER GLY GLY SER SEQRES 12 X 188 GLY GLY SER GLY GLY ASP VAL MET VAL VAL GLY GLU PRO SEQRES 13 X 188 THR LEU MET GLY GLY GLU PHE GLY ASP GLU ASP GLU ARG SEQRES 14 X 188 LEU ILE THR ARG LEU GLU ASN THR GLN PHE ASP ALA ALA SEQRES 15 X 188 ASN GLY ILE ASP ASP GLU
HET ZN X 601 1 HET ZN X 602 1 HET ZN X 603 1 HET ZN X 604 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HOH *194(H2 O)
HELIX 1 1 HIS X 44 LEU X 48 5 5 HELIX 2 2 GLN X 56 GLY X 61 1 6 HELIX 3 3 CYS X 73 GLY X 82 1 10 HELIX 4 4 HIS X 109 PHE X 113 5 5 HELIX 5 5 HIS X 139 ARG X 141 5 3
SHEET 1 A 3 SER X 41 TRP X 43 0 SHEET 2 A 3 PHE X 34 ALA X 38 -1 N ALA X 38 O SER X 41 SHEET 3 A 3 THR X 323 GLU X 326 -1 O LEU X 325 N LEU X 35 SHEET 1 B 3 MET X 70 LEU X 72 0 SHEET 2 B 3 SER X 63 LYS X 67 -1 N TYR X 65 O LEU X 72 SHEET 3 B 3 GLU X 319 LEU X 321 -1 O ARG X 320 N SER X 64 SHEET 1 C 2 GLY X 85 ALA X 86 0 SHEET 2 C 2 SER X 93 ILE X 94 -1 O ILE X 94 N GLY X 85 SHEET 1 D 3 ASN X 106 TYR X 108 0 SHEET 2 D 3 LEU X 99 ALA X 103 -1 N MET X 101 O TYR X 108 SHEET 3 D 3 THR X 308 LEU X 309 -1 O THR X 308 N VAL X 100 SHEET 1 E 3 SER X 134 CYS X 137 0 SHEET 2 E 3 ARG X 127 ILE X 131 -1 N HIS X 129 O PHE X 136 SHEET 3 E 3 MET X 302 VAL X 303 -1 O MET X 302 N PHE X 128
LINK ZN ZN X 601 SG CYS X 47 1555 1555 2.29 LINK ZN ZN X 601 SG CYS X 26 1555 1555 2.32 LINK ZN ZN X 601 SG CYS X 23 1555 1555 2.34 LINK ZN ZN X 601 ND1 HIS X 44 1555 1555 2.10 LINK ZN ZN X 602 SG CYS X 50 1555 1555 2.35 LINK ZN ZN X 602 OD2 ASP X 76 1555 1555 2.01 LINK ZN ZN X 602 SG CYS X 53 1555 1555 2.29 LINK ZN ZN X 602 SG CYS X 73 1555 1555 2.31 LINK ZN ZN X 603 SG CYS X 137 1555 1555 2.28 LINK ZN ZN X 603 OD2 ASP X 140 1555 1555 1.98 LINK ZN ZN X 603 SG CYS X 118 1555 1555 2.31 LINK ZN ZN X 603 SG CYS X 115 1555 1555 2.35 LINK ZN ZN X 604 SG CYS X 87 1555 1555 2.34 LINK ZN ZN X 604 ND1 HIS X 109 1555 1555 2.12 LINK ZN ZN X 604 SG CYS X 112 1555 1555 2.27 LINK ZN ZN X 604 SG CYS X 90 1555 1555 2.30
SITE 1 AC1 4 CYS X 23 CYS X 26 HIS X 44 CYS X 47 SITE 1 AC2 4 CYS X 50 CYS X 53 CYS X 73 ASP X 76 SITE 1 AC3 4 CYS X 115 CYS X 118 CYS X 137 ASP X 140 SITE 1 AC4 4 CYS X 87 CYS X 90 HIS X 109 CYS X 112
CRYST1 61.344 61.344 93.159 90.00 90.00 120.00 P 3 1 2 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016302 0.009412 0.000000 0.00000
SCALE2 0.000000 0.018823 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010734 0.00000