10 20 30 40 50 60 70 80 1RSW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 10-DEC-03 1RSW
TITLE 12-MER FROM SITE II CALBINDIN D9K (DKNGDGEVSFEE) TITLE 2 COORDINATION PB(II)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN, COMPND 3 INTESTINAL; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 57-68; COMPND 6 SYNONYM: CABP, CALBINDIN D9K; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: SECOND CALCIUM BINDING SITE (DKNGDGEVSFEE)
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: OCCURS NATURALY IN MAMMALS CALCIUM BINDING SOURCE 4 PROTEIN AS THE SECOND CALCIUM BINDING SITE. PURCHASED FROM SOURCE 5 COMMONWEALTH BIOTECHNOLOGIES, INC. AS THE TRIFLUOROACETATE SOURCE 6 SALT, PUR. MIN 95%
KEYWDS EF-HAND TOXIC METAL ION TRANSPORT MODEL OF ICABP KEYWDS 2 COORDINATION TOWARD LEAD, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 11
AUTHOR R.FERRARI,G.MENDOZA,T.JAMES,M.TONELLI,V.BASUS,L.GASQUE
REVDAT 2 24-FEB-09 1RSW 1 VERSN REVDAT 1 26-JUL-05 1RSW 0
JRNL AUTH R.FERRARI,G.MENDOZA,T.JAMES,M.TONELLI,V.BASUS, JRNL AUTH 2 L.GASQUE JRNL TITL COORDINATION COMPOUNDS DERIVED FROM A JRNL TITL 2 DODECAPEPTIDE AND PB2+, CD2+ AND ZN2+. MODELING JRNL TITL 3 THE SITE II FROM THE CALBINDIN D9K JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTER, MUMENTHALER, HERRMANN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1RSW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB021018.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : APROX 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM PEPTIDE AND PB(NO3)2. REMARK 210 NAOH AND HNO3 ADDED FOR PH REMARK 210 FIXING TO 5.4; 80% H2O, 20% REMARK 210 D2O. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, NOESYJR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.0, MARDIGRAS 3.2, REMARK 210 DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 8 N GLU A 12 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -11.94 61.17 REMARK 500 1 ASN A 3 -25.58 -179.59 REMARK 500 1 VAL A 8 3.20 94.65 REMARK 500 2 LYS A 2 34.63 111.54 REMARK 500 2 ASN A 3 4.88 118.63 REMARK 500 2 GLU A 7 24.24 137.79 REMARK 500 2 VAL A 8 19.05 176.48 REMARK 500 2 SER A 9 56.01 105.59 REMARK 500 2 PHE A 10 -14.78 57.58 REMARK 500 3 LYS A 2 93.75 168.27 REMARK 500 3 ASN A 3 -20.20 71.14 REMARK 500 3 ASP A 5 -61.93 -129.61 REMARK 500 3 VAL A 8 35.90 -171.34 REMARK 500 3 SER A 9 27.40 36.35 REMARK 500 3 PHE A 10 -36.60 124.40 REMARK 500 3 GLU A 11 -0.49 -50.81 REMARK 500 4 LYS A 2 22.72 85.67 REMARK 500 4 ASN A 3 -21.70 153.55 REMARK 500 4 ASP A 5 62.50 152.71 REMARK 500 4 GLU A 7 -18.25 -155.81 REMARK 500 4 SER A 9 -61.19 -142.77 REMARK 500 5 LYS A 2 22.45 86.99 REMARK 500 5 ASN A 3 -22.63 153.87 REMARK 500 5 ASP A 5 62.78 150.30 REMARK 500 5 GLU A 7 -18.76 -155.35 REMARK 500 5 SER A 9 -62.70 -141.77 REMARK 500 6 LYS A 2 42.43 168.70 REMARK 500 6 ASN A 3 -63.21 127.14 REMARK 500 6 ASP A 5 28.05 -163.15 REMARK 500 6 GLU A 7 -23.81 0.35 REMARK 500 6 VAL A 8 -71.16 -164.26 REMARK 500 6 SER A 9 -68.11 -27.07 REMARK 500 6 PHE A 10 -93.26 -120.78 REMARK 500 6 GLU A 11 -28.71 -21.45 REMARK 500 7 LYS A 2 17.04 85.50 REMARK 500 7 ASN A 3 -26.22 161.38 REMARK 500 7 ASP A 5 64.56 155.34 REMARK 500 7 GLU A 7 -21.00 -153.75 REMARK 500 7 SER A 9 -64.08 -138.58 REMARK 500 8 LYS A 2 35.95 175.29 REMARK 500 8 ASN A 3 -17.61 130.29 REMARK 500 8 ASP A 5 29.71 -165.22 REMARK 500 8 GLU A 7 -32.56 -16.59 REMARK 500 8 VAL A 8 -63.28 -137.56 REMARK 500 8 PHE A 10 -117.03 -104.12 REMARK 500 8 GLU A 11 -24.04 -2.35 REMARK 500 9 LYS A 2 78.81 169.10 REMARK 500 9 ASN A 3 -22.62 71.17 REMARK 500 9 GLU A 7 0.77 -157.21 REMARK 500 9 VAL A 8 45.33 -157.58 REMARK 500 9 PHE A 10 -36.22 114.80 REMARK 500 9 GLU A 11 -1.59 -58.40 REMARK 500 10 LYS A 2 78.43 169.07 REMARK 500 10 ASN A 3 -22.67 71.59 REMARK 500 10 GLU A 7 0.85 -157.35 REMARK 500 10 VAL A 8 45.25 -157.62 REMARK 500 10 PHE A 10 -36.13 114.84 REMARK 500 10 GLU A 11 -1.34 -58.59 REMARK 500 11 LYS A 2 -60.48 154.48 REMARK 500 11 ASN A 3 -76.61 -79.69 REMARK 500 11 GLU A 7 -59.35 145.98 REMARK 500 11 VAL A 8 -50.08 -132.61 REMARK 500 11 SER A 9 32.05 174.43 REMARK 500 11 PHE A 10 18.78 165.30 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1RSW A 1 12 UNP P02632 S100G_PIG 57 68
SEQRES 1 A 12 ASP LYS ASN GLY ASP GLY GLU VAL SER PHE GLU GLU
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000