10 20 30 40 50 60 70 80 1RLC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE(CARBON-CARBON) 04-AUG-93 1RLC
TITLE CRYSTAL STRUCTURE OF THE UNACTIVATED RIBULOSE 1, 5-BISPHOSPHATE TITLE 2 CARBOXYLASE(SLASH)OXYGENASE COMPLEXED WITH A TRANSITION STATE ANALOG, TITLE 3 2-CARBOXY-D-ARABINITOL 1,5-BISPHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE COMPND 3 CHAIN); COMPND 4 CHAIN: L; COMPND 5 EC: 4.1.1.39; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL COMPND 9 CHAIN); COMPND 10 CHAIN: S; COMPND 11 EC: 4.1.1.39; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 7 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 8 ORGANISM_TAXID: 4097
KEYWDS LYASE(CARBON-CARBON)
EXPDTA X-RAY DIFFRACTION
AUTHOR K.Y.J.ZHANG,D.CASCIO,D.EISENBERG
REVDAT 4 13-JUL-11 1RLC 1 VERSN REVDAT 3 24-FEB-09 1RLC 1 VERSN REVDAT 2 08-MAR-95 1RLC 1 HELIX REVDAT 1 31-OCT-93 1RLC 0
JRNL AUTH K.Y.ZHANG,D.CASCIO,D.EISENBERG JRNL TITL CRYSTAL STRUCTURE OF THE UNACTIVATED RIBULOSE JRNL TITL 2 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE COMPLEXED WITH A JRNL TITL 3 TRANSITION STATE ANALOG, 2-CARBOXY-D-ARABINITOL JRNL TITL 4 1,5-BISPHOSPHATE. JRNL REF PROTEIN SCI. V. 3 64 1994 JRNL REFN ISSN 0961-8368 JRNL PMID 8142899
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.M.G.CURMI,D.CASCIO,R.M.SWEET,D.EISENBERG,H.SCHREUDER REMARK 1 TITL CRYSTAL STRUCTURE OF THE UNACTIVATED FORM OF REMARK 1 TITL 2 RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE FROM REMARK 1 TITL 3 TOBACCO REFINED AT 2.0 ANGSTROMS RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 267 16980 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.S.CHAPMAN,S.W.SUH,P.M.G.CURMI,D.CASCIO,W.W.SMITH, REMARK 1 AUTH 2 D.EISENBERG REMARK 1 TITL TERTIARY STRUCTURE OF PLANT RUBISCO: DOMAINS AND THEIR REMARK 1 TITL 2 CONTACTS REMARK 1 REF SCIENCE V. 244 71 1988 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.S.CHAPMAN,S.W.SUH,D.CASCIO,W.W.SMITH,D.EISENBERG REMARK 1 TITL SLIDING-LAYER CONFORMATIONAL CHANGE LIMITED BY THE REMARK 1 TITL 2 QUATERNARY STRUCTURE OF PLANT RUBISCO REMARK 1 REF NATURE V. 329 354 1987 REMARK 1 REFN ISSN 0028-0836
REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.63 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES VAL L 90 - GLN L 96, THR L 330 REMARK 3 - ASP L 340, AND PHE S 104 - VAL S 110 HAVE VERY HIGH TEMPERATURE REMARK 3 FACTORS.
REMARK 4 REMARK 4 1RLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.50000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.40000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 74.50000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.40000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.50000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.40000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 74.50000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.40000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.50000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.40000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.50000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.40000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 74.50000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.40000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.50000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.50000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.40000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 92770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 121340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -347.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 149.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 149.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 149.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 149.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 149.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 136.80000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 149.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 136.80000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 136.80000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 149.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 149.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 136.80000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET L 1 REMARK 465 SER L 2 REMARK 465 PRO L 3 REMARK 465 GLN L 4 REMARK 465 THR L 5 REMARK 465 GLU L 6 REMARK 465 THR L 7 REMARK 465 LYS L 8 REMARK 465 ALA L 9 REMARK 465 SER L 10 REMARK 465 VAL L 11 REMARK 465 GLY L 12 REMARK 465 PHE L 13 REMARK 465 LYS L 14 REMARK 465 ALA L 15 REMARK 465 GLY L 16 REMARK 465 VAL L 17 REMARK 465 LYS L 18 REMARK 465 GLU L 19 REMARK 465 TYR L 20 REMARK 465 LYS L 21 REMARK 465 GLY L 64 REMARK 465 THR L 65 REMARK 465 TRP L 66 REMARK 465 THR L 67 REMARK 465 THR L 68 REMARK 465 ASN L 468 REMARK 465 PHE L 469 REMARK 465 ALA L 470 REMARK 465 ALA L 471 REMARK 465 VAL L 472 REMARK 465 ASP L 473 REMARK 465 VAL L 474 REMARK 465 LEU L 475 REMARK 465 ASP L 476 REMARK 465 LYS L 477
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 153 NE2 HIS L 153 CD2 -0.076 REMARK 500 HIS L 238 NE2 HIS L 238 CD2 -0.091 REMARK 500 GLU L 248 CD GLU L 248 OE1 -0.066 REMARK 500 HIS L 267 NE2 HIS L 267 CD2 -0.070 REMARK 500 HIS L 282 NE2 HIS L 282 CD2 -0.077 REMARK 500 HIS L 294 NE2 HIS L 294 CD2 -0.072 REMARK 500 HIS L 325 NE2 HIS L 325 CD2 -0.068 REMARK 500 HIS L 383 NE2 HIS L 383 CD2 -0.080 REMARK 500 HIS L 386 NE2 HIS L 386 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 41 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TRP L 70 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP L 70 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP L 70 N - CA - C ANGL. DEV. = 22.8 DEGREES REMARK 500 VAL L 69 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 TYR L 97 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR L 103 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR L 103 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 SER L 112 CA - CB - OG ANGL. DEV. = 23.0 DEGREES REMARK 500 ARG L 139 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG L 159 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG L 159 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG L 167 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR L 185 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR L 190 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP L 214 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP L 214 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG L 215 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG L 215 NE - CZ - NH2 ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU L 219 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 TYR L 239 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR L 239 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG L 258 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG L 285 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG L 285 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL L 313 CG1 - CB - CG2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ALA L 317 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 MET L 320 CG - SD - CE ANGL. DEV. = 12.8 DEGREES REMARK 500 TRP L 368 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP L 368 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP L 368 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP L 385 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP L 385 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 GLN L 401 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 TRP L 411 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP L 411 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP L 411 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG L 435 CB - CG - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG L 435 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLU L 447 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 TRP L 451 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP L 451 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 CYS L 459 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP L 462 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP L 462 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP S 4 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP S 4 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR S 17 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 VAL S 30 CA - CB - CG1 ANGL. DEV. = -9.8 DEGREES REMARK 500 TRP S 38 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 34 78.52 -117.87 REMARK 500 PRO L 46 77.73 12.88 REMARK 500 SER L 61 39.25 -97.92 REMARK 500 SER L 62 -66.24 -165.90 REMARK 500 VAL L 69 -47.64 -168.72 REMARK 500 TRP L 70 -84.73 -125.96 REMARK 500 THR L 75 -142.44 -122.07 REMARK 500 LYS L 94 -83.79 -43.46 REMARK 500 PHE L 125 0.80 -66.21 REMARK 500 HIS L 153 -51.66 -150.43 REMARK 500 ARG L 167 145.05 172.78 REMARK 500 LEU L 178 -169.33 -105.28 REMARK 500 GLU L 204 -29.72 -39.29 REMARK 500 ASN L 207 -98.29 -114.36 REMARK 500 MET L 212 107.14 -171.91 REMARK 500 ARG L 295 31.06 -85.85 REMARK 500 MET L 297 -4.73 74.71 REMARK 500 ASP L 357 86.01 -158.56 REMARK 500 VAL L 369 58.51 33.46 REMARK 500 SER L 370 11.97 58.72 REMARK 500 GLN L 439 -71.23 -86.58 REMARK 500 CYS L 459 51.20 -117.89 REMARK 500 GLU S 13 -149.81 57.27 REMARK 500 THR S 14 126.51 -36.25 REMARK 500 PRO S 19 154.73 -41.98 REMARK 500 GLU S 47 -50.22 -127.56 REMARK 500 LYS S 71 -113.80 49.89 REMARK 500 GLN S 109 25.82 46.26 REMARK 500 PHE S 115 144.80 -175.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN L 45 PRO L 46 112.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG S 65 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP L 70 19.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAP L 490
DBREF 1RLC L 1 477 EMBL Z00044 CAA77361 1 477 DBREF 1RLC S 1 123 UNP P69249 RBS_TOBAC 58 180
SEQRES 1 L 477 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE SEQRES 2 L 477 LYS ALA GLY VAL LYS GLU TYR LYS LEU THR TYR TYR THR SEQRES 3 L 477 PRO GLU TYR GLN THR LYS ASP THR ASP ILE LEU ALA ALA SEQRES 4 L 477 PHE ARG VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 L 477 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 L 477 TRP THR THR VAL TRP THR ASP GLY LEU THR SER LEU ASP SEQRES 7 L 477 ARG TYR LYS GLY ARG CYS TYR ARG ILE GLU ARG VAL VAL SEQRES 8 L 477 GLY GLU LYS ASP GLN TYR ILE ALA TYR VAL ALA TYR PRO SEQRES 9 L 477 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 L 477 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 L 477 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO ALA SEQRES 12 L 477 TYR VAL LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 L 477 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 L 477 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 L 477 LYS ASN TYR GLY ARG ALA VAL TYR GLU CYS LEU ARG GLY SEQRES 16 L 477 GLY LEU ASP PHE THR LYS ASP ASP GLU ASN VAL ASN SER SEQRES 17 L 477 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE LEU PHE CYS SEQRES 18 L 477 ALA GLU ALA LEU TYR LYS ALA GLN ALA GLU THR GLY GLU SEQRES 19 L 477 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 L 477 GLU GLU MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 L 477 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 L 477 PHE THR ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP SEQRES 23 L 477 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 L 477 VAL ILE ASP ARG GLN LYS ASN HIS GLY ILE HIS PHE ARG SEQRES 25 L 477 VAL LEU ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS SEQRES 26 L 477 ILE HIS SER GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 L 477 ARG ASP ILE THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 L 477 ASP PHE VAL GLU GLN ASP ARG SER ARG GLY ILE TYR PHE SEQRES 29 L 477 THR GLN ASP TRP VAL SER LEU PRO GLY VAL LEU PRO VAL SEQRES 30 L 477 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 L 477 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 L 477 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 L 477 ALA VAL ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL LYS SEQRES 34 L 477 ALA ARG ASN GLU GLY ARG ASP LEU ALA GLN GLU GLY ASN SEQRES 35 L 477 GLU ILE ILE ARG GLU ALA CYS LYS TRP SER PRO GLU LEU SEQRES 36 L 477 ALA ALA ALA CYS GLU VAL TRP LYS GLU ILE VAL PHE ASN SEQRES 37 L 477 PHE ALA ALA VAL ASP VAL LEU ASP LYS SEQRES 1 S 123 MET GLN VAL TRP PRO PRO ILE ASN LYS LYS LYS TYR GLU SEQRES 2 S 123 THR LEU SER TYR LEU PRO ASP LEU SER GLN GLU GLN LEU SEQRES 3 S 123 LEU SER GLU VAL GLU TYR LEU LEU LYS ASN GLY TRP VAL SEQRES 4 S 123 PRO CYS LEU GLU PHE GLU THR GLU HIS GLY PHE VAL TYR SEQRES 5 S 123 ARG GLU ASN ASN LYS SER PRO GLY TYR TYR ASP GLY ARG SEQRES 6 S 123 TYR TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR SEQRES 7 S 123 ASP ALA THR GLN VAL LEU ALA GLU VAL GLU GLU ALA LYS SEQRES 8 S 123 LYS ALA TYR PRO GLN ALA TRP ILE ARG ILE ILE GLY PHE SEQRES 9 S 123 ASP ASN VAL ARG GLN VAL GLN CYS ILE SER PHE ILE ALA SEQRES 10 S 123 TYR LYS PRO GLU GLY TYR
HET CAP L 490 21
HETNAM CAP 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
FORMUL 3 CAP C6 H14 O13 P2
HELIX 1 N1 PRO L 50 ALA L 59 1 10 HELIX 2 N2 VAL L 113 VAL L 121 1 9 HELIX 3 N3 PRO L 142 VAL L 145 1 4 HELIX 4 N4 ILE L 155 LEU L 162 1 8 HELIX 5 B1 ALA L 182 ARG L 194 1 13 HELIX 6 B2 TRP L 214 THR L 232 1 19 HELIX 7 B3 CYS L 247 LEU L 260 1 14 HELIX 8 B4A TYR L 269 GLY L 272 1 4 HELIX 9 B4B PHE L 274 ASN L 287 1 14 HELIX 10 B5A HIS L 298 ASP L 302 1 5 HELIX 11 B5B PHE L 311 SER L 321 1 11 HELIX 12 B6 GLU L 336 ARG L 350 1 15 HELIX 13 B7 MET L 387 PHE L 394 1 8 HELIX 14 B8 ASN L 413 ASN L 432 1 20 HELIX 15 C1 LEU L 437 TRP L 451 1 15 HELIX 16 C2 PRO L 453 VAL L 466 1 14 HELIX 17 S1 GLN S 23 LYS S 35 1 13 HELIX 18 S2 ALA S 80 ALA S 93 1 14
SHEET 1 N 4 ILE L 36 PRO L 44 0 SHEET 2 N 4 ARG L 83 ARG L 89 1 SHEET 3 N 4 TYR L 97 TYR L 103 -1 SHEET 4 N 4 LEU L 130 ARG L 139 1 SHEET 1 S 4 VAL S 39 GLU S 45 0 SHEET 2 S 4 THR S 68 TRP S 70 -1 SHEET 3 S 4 TRP S 98 ASP S 105 1 SHEET 4 S 4 VAL S 110 TYR S 118 -1
SSBOND 1 CYS L 172 CYS L 192 1555 1555 2.48 SSBOND 2 CYS L 247 CYS L 247 1555 7556 1.68
CISPEP 1 LYS L 175 PRO L 176 0 5.38
SITE 1 CAT 11 LYS L 175 LYS L 201 LYS L 177 ASP L 203 SITE 2 CAT 11 GLU L 204 HIS L 294 HIS L 327 ARG L 295 SITE 3 CAT 11 HIS L 298 SER L 379 CAP L 490 SITE 1 AC1 12 ASN L 123 LYS L 175 LYS L 201 HIS L 294 SITE 2 AC1 12 ARG L 295 HIS L 298 HIS L 327 SER L 379 SITE 3 AC1 12 GLY L 380 GLY L 381 GLY L 403 GLY L 404
CRYST1 149.000 149.000 136.800 90.00 90.00 90.00 I 4 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006711 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006711 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007310 0.00000