10 20 30 40 50 60 70 80 1RKN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-NOV-03 1RKN
TITLE SOLUTION STRUCTURE OF 1-110 FRAGMENT OF STAPHYLOCOCCAL TITLE 2 NUCLEASE WITH G88W MUTATION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-110; COMPND 5 SYNONYM: STAPHYLOCOCCAL NUCLEASE, TNASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D
KEYWDS STAPHYLOCOCCAL NUCLEASE, FOLDING, G88W110, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 12
AUTHOR D.S.LIU,Y.G.FENG,K.Q.YE,L.SHAN,J.F.WANG
REVDAT 3 24-FEB-09 1RKN 1 VERSN REVDAT 2 17-JUL-07 1RKN 1 JRNL REVDAT 1 07-DEC-04 1RKN 0
JRNL AUTH T.XIE,D.LIU,Y.FENG,L.SHAN,J.F.WANG JRNL TITL FOLDING STABILITY AND COOPERATIVITY OF THE THREE JRNL TITL 2 FORMS OF 1-110 RESIDUES FRAGMENT OF STAPHYLOCOCCAL JRNL TITL 3 NUCLEASE JRNL REF BIOPHYS.J. V. 92 2090 2007 JRNL REFN ISSN 0006-3495 JRNL PMID 17172296 JRNL DOI 10.1529/BIOPHYSJ.106.092155
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 702 LONG AND MEDIUM RANGE NOE RESTRAINTS, AND 169 PHY AND REMARK 3 PSI DIHEDRAL ANGLE RESTRAINTS DRIVING FROM PROGRAME TALOS.
REMARK 4 REMARK 4 1RKN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020841.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 4.9 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2MM G88W110-15N,13C REMARK 210 LABELED; 50MM ACETATE BUFFER, REMARK 210 DSS, NAN3; 90% H2O, 10% D2O; REMARK 210 1-2MM G88W110-13C LABELED; REMARK 210 50MM ACETATE BUFFER, DSS, REMARK 210 NAN3; 100% D2O; 1-2MM G88W110- REMARK 210 15N LABELED; 50MM ACETATE REMARK 210 BUFFER, DSS, NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCA(CO)NH; HNCACB; HNCO; REMARK 210 HNCA; HN(CO)CA; HNHA; HBHA(CO) REMARK 210 NH, 3D_13C-SEPARATED_NOESY, REMARK 210 3D_15N-SEPARATED_NOESY, HNHB; REMARK 210 HN(CA)CO; CCONH; HCCONH; HCCH- REMARK 210 TOCSY; HNCA-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.0, FELIX 98, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 18 -76.07 -102.52 REMARK 500 1 ASP A 21 -66.26 -96.64 REMARK 500 1 LEU A 36 171.73 -47.19 REMARK 500 1 LEU A 38 91.37 -56.34 REMARK 500 1 ASP A 40 -167.53 -123.97 REMARK 500 1 GLU A 43 -13.31 84.09 REMARK 500 1 LYS A 45 -135.28 -62.28 REMARK 500 1 PRO A 47 -98.31 -100.60 REMARK 500 1 LYS A 49 54.54 171.67 REMARK 500 1 TYR A 54 -35.30 -135.85 REMARK 500 1 ALA A 58 -65.37 -91.41 REMARK 500 1 ARG A 81 88.29 -67.53 REMARK 500 1 LYS A 84 -68.69 -134.69 REMARK 500 1 TYR A 85 24.90 -169.72 REMARK 500 1 ALA A 90 164.61 173.02 REMARK 500 1 ALA A 102 -82.47 -54.53 REMARK 500 1 LEU A 108 98.91 42.24 REMARK 500 2 LYS A 9 110.59 63.83 REMARK 500 2 LYS A 16 173.17 179.87 REMARK 500 2 ILE A 18 -75.76 -53.30 REMARK 500 2 LYS A 28 28.27 49.18 REMARK 500 2 LEU A 36 -82.03 170.29 REMARK 500 2 LEU A 37 100.30 41.01 REMARK 500 2 LEU A 38 119.08 59.40 REMARK 500 2 GLU A 43 -43.79 69.28 REMARK 500 2 PRO A 47 83.36 -54.91 REMARK 500 2 PRO A 56 -19.11 -48.79 REMARK 500 2 ALA A 58 -65.40 -90.51 REMARK 500 2 ARG A 81 78.18 -63.55 REMARK 500 2 LYS A 84 -67.05 -138.44 REMARK 500 2 TYR A 85 25.33 -172.68 REMARK 500 2 ALA A 90 172.89 175.28 REMARK 500 2 TYR A 91 41.70 -141.78 REMARK 500 3 LYS A 16 173.23 178.99 REMARK 500 3 ILE A 18 -72.15 -102.71 REMARK 500 3 LEU A 36 -150.87 163.87 REMARK 500 3 LEU A 37 -78.67 72.89 REMARK 500 3 LEU A 38 92.89 -67.47 REMARK 500 3 GLU A 43 -60.19 77.03 REMARK 500 3 PRO A 47 35.94 -63.58 REMARK 500 3 LYS A 49 41.12 173.30 REMARK 500 3 TYR A 54 -35.61 -135.19 REMARK 500 3 GLU A 57 -16.45 -48.82 REMARK 500 3 ALA A 58 -62.31 -90.52 REMARK 500 3 GLU A 75 49.76 -86.89 REMARK 500 3 ARG A 81 65.18 -63.51 REMARK 500 3 ASP A 83 78.34 -108.26 REMARK 500 3 LYS A 84 -72.02 65.11 REMARK 500 3 TYR A 85 15.87 -144.94 REMARK 500 3 ARG A 87 108.39 154.87 REMARK 500 3 ALA A 90 145.92 -179.75 REMARK 500 3 TYR A 91 52.80 -108.01 REMARK 500 3 ARG A 105 -48.12 -28.41 REMARK 500 3 LEU A 108 122.90 61.44 REMARK 500 4 LYS A 9 130.70 63.48 REMARK 500 4 ILE A 18 -73.84 -103.10 REMARK 500 4 LEU A 36 -77.85 179.05 REMARK 500 4 LEU A 38 94.61 53.42 REMARK 500 4 ASP A 40 -138.53 -130.18 REMARK 500 4 GLU A 43 -40.14 69.40 REMARK 500 4 THR A 44 -165.17 -71.94 REMARK 500 4 PRO A 47 75.39 -48.09 REMARK 500 4 LYS A 49 37.63 102.49 REMARK 500 4 GLU A 57 -64.61 -91.77 REMARK 500 4 GLU A 75 48.47 -89.09 REMARK 500 4 LYS A 78 32.44 -90.38 REMARK 500 4 ASP A 83 -100.52 -146.73 REMARK 500 4 LYS A 84 -98.73 -67.65 REMARK 500 4 TYR A 85 48.58 -87.31 REMARK 500 4 ARG A 87 74.72 27.55 REMARK 500 4 ALA A 90 147.88 166.06 REMARK 500 4 ILE A 92 115.19 59.03 REMARK 500 4 ASP A 95 27.16 80.37 REMARK 500 4 ARG A 105 -55.91 -24.85 REMARK 500 4 LEU A 108 105.31 69.30 REMARK 500 5 ILE A 18 -70.38 -104.20 REMARK 500 5 LEU A 38 119.50 67.49 REMARK 500 5 ASP A 40 -163.14 -114.54 REMARK 500 5 GLU A 43 20.59 49.44 REMARK 500 5 THR A 44 -162.76 -111.66 REMARK 500 5 LYS A 45 28.30 -154.79 REMARK 500 5 PRO A 47 71.30 -63.05 REMARK 500 5 GLU A 52 92.44 -57.68 REMARK 500 5 LYS A 53 151.52 -48.80 REMARK 500 5 ALA A 58 -65.67 -91.16 REMARK 500 5 GLU A 75 54.32 -93.62 REMARK 500 5 ARG A 81 127.10 -39.71 REMARK 500 5 ASP A 83 -82.19 -143.13 REMARK 500 5 LYS A 84 -98.22 -81.51 REMARK 500 5 ARG A 87 126.30 -25.86 REMARK 500 5 ALA A 90 160.73 179.66 REMARK 500 5 ILE A 92 119.58 59.67 REMARK 500 5 ASP A 95 55.97 85.26 REMARK 500 6 ILE A 18 -77.00 -96.54 REMARK 500 6 LEU A 36 -39.64 -175.71 REMARK 500 6 LEU A 37 87.27 -55.39 REMARK 500 6 LEU A 38 -44.67 -131.91 REMARK 500 6 GLU A 43 -61.21 81.17 REMARK 500 6 LYS A 49 80.77 -67.93 REMARK 500 6 TYR A 54 -34.24 -135.80 REMARK 500 6 ALA A 58 -65.36 -90.72 REMARK 500 6 GLU A 75 62.03 -105.28 REMARK 500 6 LYS A 78 32.41 -97.30 REMARK 500 6 ASP A 83 -89.86 -139.77 REMARK 500 6 LYS A 84 -96.31 -83.13 REMARK 500 6 ARG A 87 123.34 -15.04 REMARK 500 6 ALA A 90 160.19 176.63 REMARK 500 6 ILE A 92 122.21 59.44 REMARK 500 6 VAL A 104 -11.37 -49.65 REMARK 500 6 ARG A 105 -48.44 -24.78 REMARK 500 7 ILE A 18 -82.11 -62.65 REMARK 500 7 LEU A 36 151.91 169.70 REMARK 500 7 LEU A 37 39.43 -179.28 REMARK 500 7 LEU A 38 -102.83 63.64 REMARK 500 7 GLU A 43 -50.09 72.04 REMARK 500 7 PRO A 47 47.29 -67.65 REMARK 500 7 GLU A 52 171.09 -57.81 REMARK 500 7 TYR A 54 -34.57 -135.58 REMARK 500 7 ALA A 58 -65.57 -91.39 REMARK 500 7 LYS A 78 30.79 -92.84 REMARK 500 7 ASP A 83 -83.37 -134.51 REMARK 500 7 LYS A 84 -86.37 -91.55 REMARK 500 7 TYR A 85 36.59 -93.99 REMARK 500 7 ARG A 87 54.00 27.62 REMARK 500 7 ALA A 90 156.88 173.25 REMARK 500 7 ILE A 92 121.10 58.55 REMARK 500 7 LEU A 103 -47.36 -151.74 REMARK 500 7 VAL A 104 -26.56 -39.52 REMARK 500 7 LEU A 108 98.91 43.58 REMARK 500 8 LYS A 9 134.95 179.37 REMARK 500 8 LYS A 16 168.40 179.68 REMARK 500 8 ILE A 18 -69.73 -91.37 REMARK 500 8 LEU A 36 -31.23 171.03 REMARK 500 8 LEU A 37 79.00 -60.61 REMARK 500 8 LEU A 38 63.16 178.45 REMARK 500 8 GLU A 43 -51.57 83.72 REMARK 500 8 PRO A 47 64.80 -65.00 REMARK 500 8 GLU A 52 -177.08 -57.99 REMARK 500 8 TYR A 54 -34.64 -130.73 REMARK 500 8 GLU A 57 -19.90 -45.44 REMARK 500 8 ALA A 58 -65.08 -90.63 REMARK 500 8 GLU A 75 54.41 -99.78 REMARK 500 8 ARG A 81 118.38 -23.45 REMARK 500 8 LYS A 84 -101.70 43.76 REMARK 500 8 TYR A 85 36.33 -96.94 REMARK 500 8 ARG A 87 75.63 29.27 REMARK 500 8 ALA A 90 153.21 179.13 REMARK 500 8 ILE A 92 109.96 54.38 REMARK 500 8 LEU A 108 111.82 73.22 REMARK 500 9 HIS A 8 -167.56 -73.02 REMARK 500 9 LYS A 16 163.32 179.51 REMARK 500 9 ILE A 18 -75.27 -96.97 REMARK 500 9 LYS A 28 38.59 38.23 REMARK 500 9 LEU A 36 -64.58 167.21 REMARK 500 9 LEU A 37 -83.23 64.18 REMARK 500 9 LEU A 38 -76.97 -177.58 REMARK 500 9 GLU A 43 -46.02 69.59 REMARK 500 9 PRO A 47 90.74 -45.10 REMARK 500 9 LYS A 48 167.20 -44.52 REMARK 500 9 LYS A 49 -37.08 -155.84 REMARK 500 9 GLU A 57 -17.44 -47.41 REMARK 500 9 ALA A 58 -63.16 -90.50 REMARK 500 9 GLU A 75 41.34 -106.49 REMARK 500 9 LYS A 78 31.30 -97.28 REMARK 500 9 ARG A 81 79.22 -65.24 REMARK 500 9 LYS A 84 -31.42 177.14 REMARK 500 9 TYR A 85 -23.16 163.38 REMARK 500 9 ARG A 87 130.06 -175.84 REMARK 500 9 ILE A 92 158.23 64.31 REMARK 500 9 LEU A 108 105.43 72.99 REMARK 500 10 LYS A 16 173.11 179.98 REMARK 500 10 ILE A 18 -70.04 -101.80 REMARK 500 10 GLU A 43 -41.60 76.63 REMARK 500 10 THR A 44 -178.94 -68.55 REMARK 500 10 PRO A 47 45.14 -64.97 REMARK 500 10 LYS A 49 42.35 171.15 REMARK 500 10 LYS A 78 31.76 -96.58 REMARK 500 10 ARG A 81 84.29 -67.63 REMARK 500 10 LYS A 84 -66.41 -129.58 REMARK 500 10 TYR A 85 24.36 -162.04 REMARK 500 10 ALA A 90 160.33 172.86 REMARK 500 10 ILE A 92 127.29 60.12 REMARK 500 10 ALA A 102 -67.88 -90.17 REMARK 500 10 LEU A 108 106.70 62.57 REMARK 500 11 LYS A 16 170.66 179.47 REMARK 500 11 ILE A 18 -74.20 -106.36 REMARK 500 11 LYS A 28 27.52 49.03 REMARK 500 11 LEU A 37 -34.40 164.97 REMARK 500 11 GLU A 43 -13.88 72.95 REMARK 500 11 PRO A 47 163.34 -44.64 REMARK 500 11 LYS A 48 142.02 -37.96 REMARK 500 11 LYS A 53 94.66 -48.75 REMARK 500 11 LYS A 78 32.52 -98.48 REMARK 500 11 ARG A 81 77.39 -65.38 REMARK 500 11 ASP A 83 49.42 -91.93 REMARK 500 11 LYS A 84 32.94 77.97 REMARK 500 11 TYR A 85 -9.39 88.73 REMARK 500 11 ARG A 87 131.25 -177.31 REMARK 500 11 ALA A 90 164.05 170.91 REMARK 500 11 ILE A 92 129.89 61.85 REMARK 500 11 ASP A 95 33.48 78.80 REMARK 500 11 LEU A 108 107.20 63.27 REMARK 500 12 LYS A 9 146.20 62.52 REMARK 500 12 ILE A 18 -72.91 -97.53 REMARK 500 12 LYS A 28 52.72 38.67 REMARK 500 12 LEU A 36 -76.21 170.37 REMARK 500 12 LEU A 37 -86.12 53.32 REMARK 500 12 GLU A 43 -49.97 68.71 REMARK 500 12 PRO A 47 91.95 -45.35 REMARK 500 12 ALA A 58 -65.24 -90.60 REMARK 500 12 GLU A 75 46.85 -90.41 REMARK 500 12 ARG A 81 69.62 -66.19 REMARK 500 12 LYS A 84 -58.64 -172.03 REMARK 500 12 TYR A 85 -10.08 -163.14 REMARK 500 12 ARG A 87 161.24 162.88 REMARK 500 12 TYR A 91 39.29 -154.70 REMARK 500 12 ILE A 92 143.68 -37.99 REMARK 500 12 ASP A 95 23.96 82.00 REMARK 500 12 LEU A 108 179.70 48.87 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1RKN A 1 110 UNP P00644 NUC_STAAU 83 192
SEQADV 1RKN TRP A 88 UNP P00644 GLY 170 ENGINEERED
SEQRES 1 A 110 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 110 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 110 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 110 ASP THR PRO GLU THR LYS HIS PRO LYS LYS GLY VAL GLU SEQRES 5 A 110 LYS TYR GLY PRO GLU ALA SER ALA PHE THR LYS LYS MET SEQRES 6 A 110 VAL GLU ASN ALA LYS LYS ILE GLU VAL GLU PHE ASP LYS SEQRES 7 A 110 GLY GLN ARG THR ASP LYS TYR GLY ARG TRP LEU ALA TYR SEQRES 8 A 110 ILE TYR ALA ASP GLY LYS MET VAL ASN GLU ALA LEU VAL SEQRES 9 A 110 ARG GLN GLY LEU ALA LYS
HELIX 1 1 PHE A 61 ALA A 69 1 9
SHEET 1 A 6 GLN A 30 ARG A 35 0 SHEET 2 A 6 THR A 22 TYR A 27 -1 N LEU A 25 O MET A 32 SHEET 3 A 6 GLU A 10 THR A 13 -1 N THR A 13 O MET A 26 SHEET 4 A 6 ILE A 72 VAL A 74 -1 O VAL A 74 N GLU A 10 SHEET 5 A 6 TYR A 93 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 6 A 6 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000