10 20 30 40 50 60 70 80 1RK9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 21-NOV-03 1RK9
TITLE SOLUTION STRUCTURE OF HUMAN ALPHA-PARVALBUMIN (MINIMIZED TITLE 2 AVERAGE STRUCTURE)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARVALBUMIN ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-PARVALBUMIN; PARVALBUMIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS CALCIUM, PARVALBUMIN, EF-HAND, NMR, LANTHANIDE, STRUCTURAL KEYWDS 2 PROTEOMICS IN EUROPE, SPINE, STRUCTURAL GENOMICS, METAL KEYWDS 3 BINDING PROTEIN
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR I.BAIG,I.BERTINI,C.DEL BIANCO,Y.K.GUPTA,Y.-M.LEE,C.LUCHINAT, AUTHOR 2 A.QUATTRONE,STRUCTURAL PROTEOMICS IN EUROPE (SPINE)
REVDAT 2 24-FEB-09 1RK9 1 VERSN REVDAT 1 08-JUN-04 1RK9 0
JRNL AUTH I.BAIG,I.BERTINI,C.DEL BIANCO,Y.K.GUPTA,Y.-M.LEE, JRNL AUTH 2 C.LUCHINAT,A.QUATTRONE JRNL TITL PARAMAGNETISM-BASED REFINEMENT STRATEGY FOR THE JRNL TITL 2 SOLUTION STRUCTURE OF HUMAN ALPHA-PARVALBUMIN JRNL REF BIOCHEMISTRY V. 43 5562 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15122922 JRNL DOI 10.1021/BI035879K
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 5.0 REMARK 3 AUTHORS : REARLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1RK9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-03. REMARK 100 THE RCSB ID CODE IS RCSB020830.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298; 298 REMARK 210 PH : 7.0; 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100 MM NACL; 100 REMARK 210 MM NACL; 100 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM PARVALBUMIN U-15N,13C; REMARK 210 100MM NACL; 90% H2O, 10% D2O; REMARK 210 PH 7.0; FOR CACAPV; 0.6 MM REMARK 210 PARVALBUMIN U-15N; 100MM NACL; REMARK 210 90% H2O, 10% D2O; PH 7.0; FOR REMARK 210 CACAPV; 1.5 MM PARVALBUMIN U- REMARK 210 15N,13C; 100MM NACL; 90% H2O, REMARK 210 10% D2O; PH 7.0; FOR CADYPV; REMARK 210 0.6 MM PARVALBUMIN U-15N; REMARK 210 100MM NACL; 90% H2O, 10% D2O; REMARK 210 PH 7.0; FOR CADYPV REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY, REMARK 210 2D TOCSY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, XEASY 1.3, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY; SIMULATED REMARK 210 ANNEALING; MOLECULAR DYNAMICS; REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 PSEUDOCONTACT SHIFTS; RESIDUE REMARK 210 DIPLOAR COUPLINGS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL SPECTROMETERS ARE EQUIPPED WITH A TRIPLE RESONANCE REMARK 210 (TXI) 5 MM PROBE WITH A Z-AXIS PULSE FIELD GRADIENT, AND THE REMARK 210 500 MHZ SPECTROMETER IS EQUIPPED WITH A TRIPLE RESONANCE CRYO- REMARK 210 PROBE. THIS STRUCTURE WAS DETERMINED USING PSEUDOCONTACT REMARK 210 SHIFTS AND RESIDUE DIPOLAR COUPLINGS WITH ALL DIAMAGNETIC REMARK 210 RESTRAINTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 89.89 -164.77 REMARK 500 THR A 4 -57.12 -175.77 REMARK 500 ASN A 8 119.77 139.70 REMARK 500 SER A 24 35.46 -82.28 REMARK 500 LYS A 37 -16.43 -48.35 REMARK 500 PHE A 66 25.13 -146.96 REMARK 500 SER A 72 174.34 179.57 REMARK 500 ASP A 74 19.71 59.44 REMARK 500 ARG A 76 172.20 66.82 REMARK 500 LEU A 106 -45.94 -29.34 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 111 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 GLU A 102 OE1 92.8 REMARK 620 3 GLU A 102 OE2 76.8 41.0 REMARK 620 4 ASP A 91 OD1 111.7 90.9 131.9 REMARK 620 5 ASP A 95 OD2 83.4 176.2 138.2 89.7 REMARK 620 6 LYS A 97 O 172.9 82.9 103.2 62.9 100.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 112 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD2 REMARK 620 2 ASP A 54 OD1 55.0 REMARK 620 3 SER A 56 OG 93.2 72.3 REMARK 620 4 PHE A 58 O 161.8 136.7 80.8 REMARK 620 5 GLU A 60 OE2 96.2 136.4 78.3 65.8 REMARK 620 6 GLU A 63 OE1 95.9 112.9 170.9 90.6 100.9 REMARK 620 7 GLU A 63 OE2 69.0 70.7 142.8 125.1 134.1 42.3 REMARK 620 8 ASP A 52 OD1 130.4 76.8 81.4 66.0 129.9 92.4 86.0 REMARK 620 N 1 2 3 4 5 6 7
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 111 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 112
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CIRMMP07 RELATED DB: TARGETDB
DBREF 1RK9 A 2 110 UNP P20472 PRVA_HUMAN 1 109
SEQADV 1RK9 MET A 1 UNP P20472 INSERTION
SEQRES 1 A 110 MET SER MET THR ASP LEU LEU ASN ALA GLU ASP ILE LYS SEQRES 2 A 110 LYS ALA VAL GLY ALA PHE SER ALA THR ASP SER PHE ASP SEQRES 3 A 110 HIS LYS LYS PHE PHE GLN MET VAL GLY LEU LYS LYS LYS SEQRES 4 A 110 SER ALA ASP ASP VAL LYS LYS VAL PHE HIS MET LEU ASP SEQRES 5 A 110 LYS ASP LYS SER GLY PHE ILE GLU GLU ASP GLU LEU GLY SEQRES 6 A 110 PHE ILE LEU LYS GLY PHE SER PRO ASP ALA ARG ASP LEU SEQRES 7 A 110 SER ALA LYS GLU THR LYS MET LEU MET ALA ALA GLY ASP SEQRES 8 A 110 LYS ASP GLY ASP GLY LYS ILE GLY VAL ASP GLU PHE SER SEQRES 9 A 110 THR LEU VAL ALA GLU SER
HET CA A 111 1 HET CA A 112 1
HETNAM CA CALCIUM ION
FORMUL 2 CA 2(CA 2+)
HELIX 1 1 ASN A 8 SER A 20 1 13 HELIX 2 2 ASP A 26 VAL A 34 1 9 HELIX 3 3 GLY A 35 LYS A 39 5 5 HELIX 4 4 SER A 40 ASP A 52 1 13 HELIX 5 5 GLU A 60 GLY A 65 1 6 HELIX 6 6 ILE A 67 SER A 72 1 6 HELIX 7 7 SER A 79 ASP A 91 1 13 HELIX 8 8 GLY A 99 SER A 110 1 12
LINK CA CA A 111 OD2 ASP A 93 1555 1555 3.02 LINK CA CA A 111 OE1 GLU A 102 1555 1555 2.13 LINK CA CA A 111 OE2 GLU A 102 1555 1555 3.28 LINK CA CA A 111 OD1 ASP A 91 1555 1555 3.04 LINK CA CA A 111 OD2 ASP A 95 1555 1555 2.12 LINK CA CA A 111 O LYS A 97 1555 1555 3.07 LINK CA CA A 112 OD2 ASP A 54 1555 1555 2.19 LINK CA CA A 112 OD1 ASP A 54 1555 1555 2.39 LINK CA CA A 112 OG SER A 56 1555 1555 3.03 LINK CA CA A 112 O PHE A 58 1555 1555 2.50 LINK CA CA A 112 OE2 GLU A 60 1555 1555 2.99 LINK CA CA A 112 OE1 GLU A 63 1555 1555 2.41 LINK CA CA A 112 OE2 GLU A 63 1555 1555 3.25 LINK CA CA A 112 OD1 ASP A 52 1555 1555 3.01
SITE 1 AC1 5 ASP A 91 ASP A 93 ASP A 95 LYS A 97 SITE 2 AC1 5 GLU A 102 SITE 1 AC2 6 ASP A 52 ASP A 54 SER A 56 PHE A 58 SITE 2 AC2 6 GLU A 60 GLU A 63
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000