10 20 30 40 50 60 70 80 1RHD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE(THIOSULFATE,CYANIDE SULFUR) 23-NOV-77 1RHD
TITLE STRUCTURE OF BOVINE LIVER RHODANESE. I. STRUCTURE TITLE 2 DETERMINATION AT 2.5 ANGSTROMS RESOLUTION AND A COMPARISON TITLE 3 OF THE CONFORMATION AND SEQUENCE OF ITS TWO DOMAINS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODANESE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913
KEYWDS TRANSFERASE(THIOSULFATE, CYANIDE SULFUR), KEYWDS 2 TRANSFERASE(THIOSULFATE,CYANIDE SULFUR)
EXPDTA X-RAY DIFFRACTION
AUTHOR W.G.J.HOL,J.H.PLOEGMAN,K.H.KALK,G.DRENT
REVDAT 12 24-FEB-09 1RHD 1 VERSN REVDAT 11 01-APR-03 1RHD 1 JRNL REVDAT 10 27-JAN-84 1RHD 1 REMARK REVDAT 9 27-OCT-83 1RHD 1 REMARK REVDAT 8 30-SEP-83 1RHD 1 REVDAT REVDAT 7 15-JAN-82 1RHD 1 REMARK REVDAT 6 14-FEB-80 1RHD 3 CRYST1 REVDAT 5 02-JUL-79 1RHD 1 JRNL REVDAT 4 05-MAR-79 1RHD 2 CONECT REVDAT 3 23-FEB-79 1RHD 1 REMARK REVDAT 2 04-OCT-78 1RHD 1 JRNL REVDAT 1 16-JAN-78 1RHD 0
JRNL AUTH J.H.PLOEGMAN,G.DRENT,K.H.KALK,W.G.HOL JRNL TITL STRUCTURE OF BOVINE LIVER RHODANESE. I. STRUCTURE JRNL TITL 2 DETERMINATION AT 2.5 A RESOLUTION AND A COMPARISON JRNL TITL 3 OF THE CONFORMATION AND SEQUENCE OF ITS TWO JRNL TITL 4 DOMAINS. JRNL REF J.MOL.BIOL. V. 123 557 1978 JRNL REFN ISSN 0022-2836 JRNL PMID 691057 JRNL DOI 10.1016/0022-2836(78)90207-3
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.J.LIJK,K.H.KALK,N.P.BRANDENBURG,W.G.J.HOL REMARK 1 TITL BINDING OF METAL CYANIDE COMPLEXES TO BOVINE LIVER REMARK 1 TITL 2 RHODANESE IN THE CRYSTALLINE STATE REMARK 1 REF BIOCHEMISTRY V. 22 2952 1983 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.PLOEGMAN,G.DRENT,K.H.KALK,W.G.J.HOL REMARK 1 TITL THE STRUCTURE OF BOVINE LIVER RHODANESE. II. THE REMARK 1 TITL 2 ACTIVE SITE IN THE SULFUR-SUBSTITUTED AND THE REMARK 1 TITL 3 SULFUR-FREE ENZYME REMARK 1 REF J.MOL.BIOL. V. 127 149 1979 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.BERGSMA,W.G.J.HOL,J.N.JANSONIUS,K.H.KALK, REMARK 1 AUTH 2 J.H.PLOEGMAN,J.D.G.SMIT REMARK 1 TITL THE DOUBLE DOMAIN STRUCTURE OF RHODANESE REMARK 1 REF J.MOL.BIOL. V. 98 637 1975 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.H.PLOEGMAN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF BOVINE LIVER REMARK 1 TITL 2 RHODANESE REMARK 1 REF THESIS 1977 REMARK 1 REFN ISSN 0012-4958 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.D.G.SMIT,J.H.PLOEGMAN,M.PIERROT,K.H.KALK, REMARK 1 AUTH 2 J.N.JANSONIUS,J.DRENTH REMARK 1 TITL THE STRUCTURE OF RHODANESE AT 4 ANGSTROMS REMARK 1 TITL 2 RESOLUTION. THE CONFORMATION OF THE POLYPEPTIDE REMARK 1 TITL 3 CHAIN REMARK 1 REF ISR.J.CHEM. V. 12 287 1974 REMARK 1 REFN ISSN 0021-2148 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.D.G.SMIT REMARK 1 REF THESIS 1973 REMARK 1 REFN ISSN 0012-4958 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.DRENTH,J.D.G.SMIT REMARK 1 TITL CRYSTALLOGRAPHIC DATA FOR RHODANESE FROM BOVINE REMARK 1 TITL 2 LIVER REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 45 1320 1971 REMARK 1 REFN ISSN 0006-291X
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1RHD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.05000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 182 O GLY A 202 1.50 REMARK 500 CZ ARG A 182 O GLY A 202 2.00 REMARK 500 O TRP A 113 N ARG A 116 2.02 REMARK 500 O LEU A 258 CG LEU A 262 2.06 REMARK 500 O ALA A 257 CB TYR A 261 2.10 REMARK 500 NH2 ARG A 186 OE1 GLU A 193 2.13 REMARK 500 NE2 HIS A 94 OG SER A 124 2.14 REMARK 500 O ALA A 257 N TYR A 261 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA VAL A 97 NZ LYS A 241 4557 0.31 REMARK 500 NE2 HIS A 2 OG SER A 86 4547 0.33 REMARK 500 N THR A 93 O ILE A 244 4557 0.35 REMARK 500 CZ PHE A 58 OG1 THR A 240 4557 0.39 REMARK 500 CB PRO A 26 CG LYS A 162 4557 0.41 REMARK 500 O TYR A 70 N GLN A 290 4556 0.43 REMARK 500 CB LYS A 23 C GLU A 169 4557 0.43 REMARK 500 C SER A 86 OD1 ASP A 267 4557 0.45 REMARK 500 O GLY A 85 CA ASP A 267 4557 0.45 REMARK 500 N PHE A 80 C CYS A 263 4557 0.46 REMARK 500 CE2 TRP A 112 CG LYS A 236 4557 0.46 REMARK 500 O GLY A 79 CA GLY A 264 4557 0.48 REMARK 500 O ARG A 116 O MET A 231 4557 0.49 REMARK 500 CD1 LEU A 31 CG LYS A 241 4557 0.52 REMARK 500 CA SER A 68 CA GLY A 189 4556 0.52 REMARK 500 N ALA A 67 C SER A 201 4556 0.55 REMARK 500 CD2 PHE A 115 C ASP A 238 4557 0.55 REMARK 500 O TRP A 113 CA GLU A 233 4557 0.55 REMARK 500 CB PRO A 69 CB LEU A 188 4556 0.58 REMARK 500 CG2 THR A 93 CA ILE A 244 4557 0.58 REMARK 500 CD1 LEU A 156 O GLU A 226 4557 0.59 REMARK 500 O HIS A 94 N GLN A 177 4557 0.59 REMARK 500 N ARG A 29 CA PHE A 176 4557 0.61 REMARK 500 CB ALA A 81 C ALA A 260 4557 0.61 REMARK 500 C GLY A 119 CE MET A 210 4557 0.64 REMARK 500 O ALA A 67 O ARG A 186 4556 0.65 REMARK 500 CG PHE A 58 CG2 THR A 240 4557 0.69 REMARK 500 C LEU A 28 CB PHE A 176 4557 0.70 REMARK 500 C THR A 93 O GLN A 177 4557 0.70 REMARK 500 OD2 ASP A 92 CA THR A 246 4557 0.70 REMARK 500 N PRO A 69 C LEU A 188 4556 0.70 REMARK 500 ND2 ASN A 91 CG2 ILE A 256 4557 0.70 REMARK 500 CB ASP A 92 C ALA A 245 4557 0.71 REMARK 500 CE1 PHE A 80 CD2 LEU A 239 4557 0.71 REMARK 500 SD MET A 73 N GLY A 291 4556 0.72 REMARK 500 CB SER A 18 N SER A 173 4557 0.72 REMARK 500 C HIS A 94 CA GLN A 177 4557 0.73 REMARK 500 CZ2 TRP A 112 CD LYS A 236 4557 0.73 REMARK 500 CG ARG A 116 N LYS A 236 4557 0.74 REMARK 500 CB LEU A 156 C GLU A 227 4557 0.74 REMARK 500 CZ TYR A 6 O GLY A 206 4557 0.75 REMARK 500 N LEU A 87 CG ASP A 267 4557 0.77 REMARK 500 C ARG A 29 O ARG A 175 4557 0.77 REMARK 500 O VAL A 117 N MET A 231 4557 0.80 REMARK 500 CA ALA A 81 O ALA A 260 4557 0.80 REMARK 500 CG LEU A 31 CB LYS A 241 4557 0.80 REMARK 500 CA VAL A 84 CD LYS A 265 4557 0.81 REMARK 500 N PHE A 80 O CYS A 263 4557 0.82 REMARK 500 NE ARG A 229 CD LYS A 292 1556 0.82 REMARK 500 CA MET A 73 C GLY A 291 4556 0.84 REMARK 500 REMARK 500 THIS ENTRY HAS 1056 CLOSE CONTACTS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 14 NE1 TRP A 14 CE2 -0.095 REMARK 500 TRP A 35 NE1 TRP A 35 CE2 -0.096 REMARK 500 ASN A 91 CG ASN A 91 OD1 0.154 REMARK 500 ASN A 99 CG ASN A 99 OD1 0.154 REMARK 500 TRP A 112 NE1 TRP A 112 CE2 -0.096 REMARK 500 TRP A 113 NE1 TRP A 113 CE2 -0.095 REMARK 500 ASN A 127 CG ASN A 127 OD1 0.155 REMARK 500 ASN A 132 CG ASN A 132 OD1 0.154 REMARK 500 TRP A 133 NE1 TRP A 133 CE2 -0.095 REMARK 500 ASN A 157 CG ASN A 157 OD1 0.155 REMARK 500 ASN A 170 CG ASN A 170 OD1 0.155 REMARK 500 ASN A 209 CG ASN A 209 OD1 0.153 REMARK 500 ASN A 219 CG ASN A 219 OD1 0.154 REMARK 500 TRP A 275 NE1 TRP A 275 CE2 -0.096 REMARK 500 TRP A 278 NE1 TRP A 278 CE2 -0.096 REMARK 500 TRP A 287 NE1 TRP A 287 CE2 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 65 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 102 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 195 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 214 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU A 258 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 ASP A 267 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ALA A 282 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 ALA A 282 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 -101.19 -148.00 REMARK 500 VAL A 19 -73.47 -70.48 REMARK 500 ARG A 20 -31.47 -39.28 REMARK 500 PRO A 26 -11.00 -46.66 REMARK 500 THR A 40 -88.81 -57.60 REMARK 500 ARG A 50 113.34 -165.46 REMARK 500 PRO A 53 108.93 -46.63 REMARK 500 LYS A 66 18.96 -65.03 REMARK 500 VAL A 72 101.19 36.67 REMARK 500 PRO A 75 -172.64 -46.58 REMARK 500 PHE A 80 -77.70 -42.59 REMARK 500 LEU A 87 50.33 -103.06 REMARK 500 ASP A 102 -38.39 -27.00 REMARK 500 PHE A 106 -65.34 179.10 REMARK 500 MET A 114 -63.09 -25.18 REMARK 500 PHE A 118 35.30 -87.92 REMARK 500 ARG A 121 -83.94 -47.62 REMARK 500 THR A 122 93.07 -54.81 REMARK 500 VAL A 123 100.83 -163.68 REMARK 500 PRO A 139 158.01 -46.55 REMARK 500 PRO A 147 167.51 -46.59 REMARK 500 PRO A 149 153.45 -46.63 REMARK 500 LYS A 174 21.89 86.09 REMARK 500 ALA A 183 134.82 88.82 REMARK 500 GLN A 184 -49.53 -28.71 REMARK 500 ARG A 205 113.67 -37.02 REMARK 500 MET A 210 62.70 -153.21 REMARK 500 VAL A 251 -66.27 -107.36 REMARK 500 CYS A 254 -3.89 -55.50 REMARK 500 ASP A 267 -31.15 -31.92 REMARK 500 SER A 274 -168.09 76.84 REMARK 500 GLU A 285 -0.02 -37.45 REMARK 500 LYS A 292 165.38 67.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 50 0.18 SIDE_CHAIN REMARK 500 ARG A 121 0.22 SIDE_CHAIN REMARK 500 ARG A 131 0.14 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1RHD A 1 293 UNP P00586 THTR_BOVIN 1 293
SEQADV 1RHD ASN A 99 UNP P00586 ASP 99 CONFLICT SEQADV 1RHD ASP A 214 UNP P00586 ASN 214 CONFLICT SEQADV 1RHD ASN A 219 UNP P00586 ASP 219 CONFLICT
SEQRES 1 A 293 VAL HIS GLN VAL LEU TYR ARG ALA LEU VAL SER THR LYS SEQRES 2 A 293 TRP LEU ALA GLU SER VAL ARG ALA GLY LYS VAL GLY PRO SEQRES 3 A 293 GLY LEU ARG VAL LEU ASP ALA SER TRP TYR SER PRO GLY SEQRES 4 A 293 THR ARG GLU ALA ARG LYS GLU TYR LEU GLU ARG HIS VAL SEQRES 5 A 293 PRO GLY ALA SER PHE PHE ASP ILE GLU GLU CYS ARG ASP SEQRES 6 A 293 LYS ALA SER PRO TYR GLU VAL MET LEU PRO SER GLU ALA SEQRES 7 A 293 GLY PHE ALA ASP TYR VAL GLY SER LEU GLY ILE SER ASN SEQRES 8 A 293 ASP THR HIS VAL VAL VAL TYR ASN GLY ASP ASP LEU GLY SEQRES 9 A 293 SER PHE TYR ALA PRO ARG VAL TRP TRP MET PHE ARG VAL SEQRES 10 A 293 PHE GLY HIS ARG THR VAL SER VAL LEU ASN GLY GLY PHE SEQRES 11 A 293 ARG ASN TRP LEU LYS GLU GLY HIS PRO VAL THR SER GLU SEQRES 12 A 293 PRO SER ARG PRO GLU PRO ALA ILE PHE LYS ALA THR LEU SEQRES 13 A 293 ASN ARG SER LEU LEU LYS THR TYR GLU GLN VAL LEU GLU SEQRES 14 A 293 ASN LEU GLU SER LYS ARG PHE GLN LEU VAL ASP SER ARG SEQRES 15 A 293 ALA GLN GLY ARG TYR LEU GLY THR GLN PRO GLU PRO ASP SEQRES 16 A 293 ALA VAL GLY LEU ASP SER GLY HIS ILE ARG GLY SER VAL SEQRES 17 A 293 ASN MET PRO PHE MET ASP PHE LEU THR GLU ASN GLY PHE SEQRES 18 A 293 GLU LYS SER PRO GLU GLU LEU ARG ALA MET PHE GLU ALA SEQRES 19 A 293 LYS LYS VAL ASP LEU THR LYS PRO LEU ILE ALA THR CSS SEQRES 20 A 293 ARG LYS GLY VAL THR ALA CYS HIS ILE ALA LEU ALA ALA SEQRES 21 A 293 TYR LEU CYS GLY LYS PRO ASP VAL ALA ILE TYR ASP GLY SEQRES 22 A 293 SER TRP PHE GLU TRP PHE HIS ARG ALA PRO PRO GLU THR SEQRES 23 A 293 TRP VAL SER GLN GLY LYS GLY
MODRES 1RHD CSS A 247 CYS S-MERCAPTOCYSTEINE
HET CSS A 247 7
HETNAM CSS S-MERCAPTOCYSTEINE
FORMUL 1 CSS C3 H7 N O2 S2
HELIX 1 A SER A 11 GLY A 22 1 12 HELIX 2 B GLU A 42 ARG A 50 1FORMS SOME 3/10 H-BONDS 9 HELIX 3 C SER A 76 LEU A 87 1FORMS SOME 3/10 H-BONDS 12 HELIX 4 D TYR A 107 GLY A 119 1FORMS SOME 3/10 H-BONDS 13 HELIX 5 E GLY A 129 GLY A 137 1FORMS SOME 3/10 H-BONDS 9 HELIX 6 A* THR A 163 LYS A 174 1FORMS SOME 3/10 H-BONDS 12 HELIX 7 B* ALA A 183 GLY A 189 1 7 HELIX 8 C* SER A 224 LYS A 235 1 12 HELIX 9 D* VAL A 251 GLY A 264 1FORMS SOME 3/10 H-BONDS 14 HELIX 10 E* SER A 274 ALA A 282 1 9
SHEET 1 I 5 ALA A 8 VAL A 10 0 SHEET 2 I 5 THR A 122 ASN A 127 1 N VAL A 10 O VAL A 125 SHEET 3 I 5 HIS A 94 TYR A 98 1 N SER A 124 O VAL A 95 SHEET 4 I 5 GLY A 27 ALA A 33 1 N VAL A 96 O ARG A 29 SHEET 5 I 5 SER A 56 PHE A 58 1 N ASP A 32 O SER A 56 SHEET 1 II 5 LEU A 160 LYS A 162 0 SHEET 2 II 5 ALA A 269 TYR A 271 1 N LYS A 162 O ILE A 270 SHEET 3 II 5 PRO A 242 THR A 246 1 N TYR A 271 O ALA A 245 SHEET 4 II 5 GLN A 177 SER A 181 1 N THR A 246 O VAL A 179 SHEET 5 II 5 VAL A 208 MET A 210 1 N ASP A 180 O VAL A 208
LINK C THR A 246 N CSS A 247 1555 1555 1.32 LINK C CSS A 247 N ARG A 248 1555 1555 1.32
CRYST1 156.100 49.000 42.200 90.00 98.60 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006406 0.000000 0.000969 0.00000
SCALE2 0.000000 0.020408 0.000000 0.00000
SCALE3 0.000000 0.000000 0.023966 0.00000