1RGU - Header Asymmetric Unit

HEADER HYDROLASE/DNA 13-NOV-03 1RGU

TITLE THE CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA TITLE 2 PHOSPHODIESTERASE COMPLEXED WITH VANADATE, OCTOPAMINE, AND TITLE 3 TETRANUCLEOTIDE AGTG

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*GP*TP*G)-3'; COMPND 3 CHAIN: D, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 1; COMPND 7 CHAIN: A, B; COMPND 8 FRAGMENT: RESIDUES 149-608; COMPND 9 SYNONYM: TYR-DNA PHOSPHODIESTERASE 1, TDP1; COMPND 10 EC: 3.1.4.-; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: TDP1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET15B

KEYWDS PROTEIN-DNA COMPLEX, VANADATE COMPLEX, TRANSITION STATE KEYWDS 2 MIMIC, HYDROLASE/DNA COMPLEX

EXPDTA X-RAY DIFFRACTION

AUTHOR D.R.DAVIES,H.INTERTHAL,J.J.CHAMPOUX,W.G.HOL

REVDAT 2 24-FEB-09 1RGU 1 VERSN REVDAT 1 02-MAR-04 1RGU 0

JRNL AUTH D.R.DAVIES,H.INTERTHAL,J.J.CHAMPOUX,W.G.HOL JRNL TITL EXPLORATIONS OF PEPTIDE AND OLIGONUCLEOTIDE JRNL TITL 2 BINDING SITES OF TYROSYL-DNA PHOSPHODIESTERASE JRNL TITL 3 USING VANADATE COMPLEXES. JRNL REF J.MED.CHEM. V. 47 829 2004 JRNL REFN ISSN 0022-2623 JRNL PMID 14761185 JRNL DOI 10.1021/JM030487X

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.R.DAVIES,H.INTERTHAL,J.J.CHAMPOUX,W.G.J.HOL REMARK 1 TITL CRYSTAL STRUCTURE OF A TRANSITION STATE MIMIC FOR REMARK 1 TITL 2 TDP1 ASSEMBLED FROM VANADATE, DNA, AND A REMARK 1 TITL 3 TOPOISOMERASE I-DERIVED PEPTIDE REMARK 1 REF CHEM.BIOL. V. 10 139 2003 REMARK 1 REFN ISSN 1074-5521 REMARK 1 DOI 10.1016/S1074-5521(03)00021-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.R.DAVIES,H.INTERTHAL,J.J.CHAMPOUX,W.G.J.HOL REMARK 1 TITL INSIGHTS INTO SUBSTRATE BINDING AND CATALYTIC REMARK 1 TITL 2 MECHANISM OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 1 TITL 3 (TDP1) FROM VANADATE AND TUNGSTATE-INHIBITED REMARK 1 TITL 4 STRUCTURES REMARK 1 REF J.MOL.BIOL. V. 324 917 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)01154-3 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.R.DAVIES,H.INTERTHAL,J.J.CHAMPOUX,W.G.J.HOL REMARK 1 TITL THE CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA REMARK 1 TITL 2 PHOSPHODIESTERASE, TDP1 REMARK 1 REF STRUCTURE V. 10 237 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 1 DOI 10.1016/S0969-2126(02)00707-4

REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 44791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6820 REMARK 3 NUCLEIC ACID ATOMS : 95 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.287 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7188 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9780 ; 1.219 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 847 ; 6.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1031 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5413 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3233 ; 0.212 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 648 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.129 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.204 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.100 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4269 ; 1.489 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6885 ; 2.520 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2919 ; 2.590 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2895 ; 3.917 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1RGU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020733.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47285 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 5.840 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB STRUCTURE 1RFF REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, NACL, HEPES, SPERMINE, PH REMARK 280 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.85800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.27850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.85800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.27850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO BIOLOGICAL ASSEMBLIES PER ASYMMETRIC UNIT, REMARK 300 COMPOSED OF CHAINS A AND D, AND B AND F.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA D 803 REMARK 465 DA F 803 REMARK 465 DG F 804 REMARK 465 MET A 124 REMARK 465 GLY A 125 REMARK 465 SER A 126 REMARK 465 SER A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 LEU A 137 REMARK 465 VAL A 138 REMARK 465 PRO A 139 REMARK 465 ARG A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 HIS A 143 REMARK 465 MET A 144 REMARK 465 LEU A 145 REMARK 465 GLU A 146 REMARK 465 ASP A 147 REMARK 465 PRO A 148 REMARK 465 GLY A 149 REMARK 465 GLU A 150 REMARK 465 GLY A 151 REMARK 465 GLN A 152 REMARK 465 ASP A 153 REMARK 465 ILE A 154 REMARK 465 TRP A 155 REMARK 465 ASP A 156 REMARK 465 MET A 157 REMARK 465 LEU A 158 REMARK 465 ASP A 159 REMARK 465 LYS A 160 REMARK 465 GLY A 161 REMARK 465 PRO A 387 REMARK 465 ASN A 388 REMARK 465 ALA A 389 REMARK 465 GLU A 390 REMARK 465 LYS A 425 REMARK 465 GLU A 426 REMARK 465 SER A 427 REMARK 465 LYS A 428 REMARK 465 THR A 429 REMARK 465 PRO A 430 REMARK 465 GLY A 431 REMARK 465 LYS A 432 REMARK 465 SER A 433 REMARK 465 SER A 434 REMARK 465 PHE A 560 REMARK 465 ALA A 561 REMARK 465 GLY A 562 REMARK 465 SER A 563 REMARK 465 GLN A 564 REMARK 465 GLU A 565 REMARK 465 PRO A 566 REMARK 465 MET A 567 REMARK 465 MET B 124 REMARK 465 GLY B 125 REMARK 465 SER B 126 REMARK 465 SER B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 SER B 134 REMARK 465 SER B 135 REMARK 465 GLY B 136 REMARK 465 LEU B 137 REMARK 465 VAL B 138 REMARK 465 PRO B 139 REMARK 465 ARG B 140 REMARK 465 GLY B 141 REMARK 465 SER B 142 REMARK 465 HIS B 143 REMARK 465 MET B 144 REMARK 465 LEU B 145 REMARK 465 GLU B 146 REMARK 465 ASP B 147 REMARK 465 PRO B 148 REMARK 465 GLY B 149 REMARK 465 GLU B 150 REMARK 465 GLY B 151 REMARK 465 GLN B 152 REMARK 465 ASP B 153 REMARK 465 ILE B 154 REMARK 465 TRP B 155 REMARK 465 ASP B 156 REMARK 465 MET B 157 REMARK 465 LEU B 158 REMARK 465 ASP B 159 REMARK 465 LYS B 160 REMARK 465 GLY B 161 REMARK 465 LYS B 425 REMARK 465 GLU B 426 REMARK 465 SER B 427 REMARK 465 LYS B 428 REMARK 465 THR B 429 REMARK 465 PRO B 430 REMARK 465 GLY B 431 REMARK 465 LYS B 432 REMARK 465 SER B 433 REMARK 465 ALA B 561 REMARK 465 GLY B 562 REMARK 465 SER B 563 REMARK 465 GLN B 564 REMARK 465 GLU B 565 REMARK 465 PRO B 566 REMARK 465 MET B 567 REMARK 465 ALA B 568 REMARK 465 SER B 608

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG D 804 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG D 804 C2 N2 N3 C4 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 ASP A 307 CG OD1 OD2 REMARK 470 GLN A 557 CG CD OE1 NE2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS A 596 CG CD CE NZ REMARK 470 ASP B 307 CG OD1 OD2 REMARK 470 THR B 309 OG1 CG2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 LYS B 344 CG CD CE NZ REMARK 470 GLN B 557 CG CD OE1 NE2 REMARK 470 LYS B 558 CG CD CE NZ

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 408 OH TYR B 476 2.04 REMARK 500 O ILE A 305 O HOH A 758 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 209 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 340 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 407 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 551 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 599 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 204 -64.97 -101.90 REMARK 500 ARG A 232 -119.64 46.10 REMARK 500 HIS A 290 -66.52 -95.86 REMARK 500 ASP A 307 -17.51 -44.25 REMARK 500 TRP A 411 -50.86 -156.88 REMARK 500 SER A 414 -80.76 -86.86 REMARK 500 GLN A 470 39.22 -155.30 REMARK 500 ALA A 482 46.01 -143.71 REMARK 500 LYS A 527 67.18 39.71 REMARK 500 ASN A 528 18.87 59.01 REMARK 500 ARG B 232 -115.73 61.76 REMARK 500 HIS B 290 -67.21 -95.04 REMARK 500 TRP B 411 -49.73 -161.86 REMARK 500 SER B 414 -91.34 -100.05 REMARK 500 PRO B 461 48.30 -82.91 REMARK 500 GLN B 470 45.37 -148.46 REMARK 500 ALA B 482 42.70 -151.79 REMARK 500 REMARK 500 REMARK: NULL

REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 VO4 A 699 REMARK 610 VO4 B 699

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 699 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 806 O3' REMARK 620 2 HIS A 263 NE2 88.0 REMARK 620 3 OTS A 995 O4 87.9 174.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 B 699 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG F 806 O3' REMARK 620 2 HIS B 263 NE2 84.3 REMARK 620 3 OTS B 996 O4 83.1 167.4 REMARK 620 N 1 2

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 699 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 B 699 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 999 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OTS A 995 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OTS B 996

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NOP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH VANADATE, OCTAPEPTIDE REMARK 900 KLNYLDPR, AND HEXANUCLEOTIDE AGAGTT REMARK 900 RELATED ID: 1JY1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO STRUCTURE REMARK 900 RELATED ID: 1RFF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, OCTAPEPTIDE KLNYYDPR, AND REMARK 900 TETRANUCLEOTIDE AGTT. REMARK 900 RELATED ID: 1RFI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, PENTAPEPTIDE KLNYK, AND REMARK 900 TETRANUCLEOTIDE AGTC REMARK 900 RELATED ID: 1RG1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, OCTOPAMINE, AND TETRANUCLEOTIDE REMARK 900 AGTT REMARK 900 RELATED ID: 1RG2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, OCTOPAMINE, AND TETRANUCLEOTIDE REMARK 900 AGTA REMARK 900 RELATED ID: 1RGT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, OCTOPAMINE, AND TETRANUCLEOTIDE REMARK 900 AGTC REMARK 900 RELATED ID: 1RH0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TYROSYL-DNA PHOSPHODIESTERASE REMARK 900 COMPLEXED WITH VANADATE, OCTOPAMINE AND TRINUCLEOTIDE GTT

DBREF 1RGU A 149 608 UNP Q9NUW8 TYDP1_HUMAN 149 608 DBREF 1RGU B 149 608 UNP Q9NUW8 TYDP1_HUMAN 149 608 DBREF 1RGU D 803 806 PDB 1RGU 1RGU 803 806 DBREF 1RGU F 803 806 PDB 1RGU 1RGU 803 806

SEQADV 1RGU MET A 124 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY A 125 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER A 126 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER A 127 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 128 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 129 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 130 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 131 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 132 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 133 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER A 134 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER A 135 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY A 136 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU LEU A 137 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU VAL A 138 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU PRO A 139 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ARG A 140 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY A 141 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER A 142 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS A 143 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU MET A 144 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU LEU A 145 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLU A 146 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ASP A 147 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU PRO A 148 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ASN A 322 UNP Q9NUW8 ASP 322 ENGINEERED SEQADV 1RGU THR A 328 UNP Q9NUW8 MET 328 ENGINEERED SEQADV 1RGU LEU A 548 UNP Q9NUW8 PHE 548 ENGINEERED SEQADV 1RGU MET B 124 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY B 125 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER B 126 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER B 127 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 128 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 129 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 130 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 131 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 132 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 133 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER B 134 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER B 135 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY B 136 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU LEU B 137 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU VAL B 138 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU PRO B 139 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ARG B 140 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLY B 141 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU SER B 142 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU HIS B 143 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU MET B 144 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU LEU B 145 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU GLU B 146 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ASP B 147 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU PRO B 148 UNP Q9NUW8 CLONING ARTIFACT SEQADV 1RGU ASN B 322 UNP Q9NUW8 ASP 322 ENGINEERED SEQADV 1RGU THR B 328 UNP Q9NUW8 MET 328 ENGINEERED SEQADV 1RGU LEU B 548 UNP Q9NUW8 PHE 548 ENGINEERED

SEQRES 1 D 4 DA DG DT DG SEQRES 1 F 4 DA DG DT DG SEQRES 1 A 485 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 485 LEU VAL PRO ARG GLY SER HIS MET LEU GLU ASP PRO GLY SEQRES 3 A 485 GLU GLY GLN ASP ILE TRP ASP MET LEU ASP LYS GLY ASN SEQRES 4 A 485 PRO PHE GLN PHE TYR LEU THR ARG VAL SER GLY VAL LYS SEQRES 5 A 485 PRO LYS TYR ASN SER GLY ALA LEU HIS ILE LYS ASP ILE SEQRES 6 A 485 LEU SER PRO LEU PHE GLY THR LEU VAL SER SER ALA GLN SEQRES 7 A 485 PHE ASN TYR CYS PHE ASP VAL ASP TRP LEU VAL LYS GLN SEQRES 8 A 485 TYR PRO PRO GLU PHE ARG LYS LYS PRO ILE LEU LEU VAL SEQRES 9 A 485 HIS GLY ASP LYS ARG GLU ALA LYS ALA HIS LEU HIS ALA SEQRES 10 A 485 GLN ALA LYS PRO TYR GLU ASN ILE SER LEU CYS GLN ALA SEQRES 11 A 485 LYS LEU ASP ILE ALA PHE GLY THR HIS HIS THR LYS MET SEQRES 12 A 485 MET LEU LEU LEU TYR GLU GLU GLY LEU ARG VAL VAL ILE SEQRES 13 A 485 HIS THR SER ASN LEU ILE HIS ALA ASP TRP HIS GLN LYS SEQRES 14 A 485 THR GLN GLY ILE TRP LEU SER PRO LEU TYR PRO ARG ILE SEQRES 15 A 485 ALA ASP GLY THR HIS LYS SER GLY GLU SER PRO THR HIS SEQRES 16 A 485 PHE LYS ALA ASN LEU ILE SER TYR LEU THR ALA TYR ASN SEQRES 17 A 485 ALA PRO SER LEU LYS GLU TRP ILE ASP VAL ILE HIS LYS SEQRES 18 A 485 HIS ASP LEU SER GLU THR ASN VAL TYR LEU ILE GLY SER SEQRES 19 A 485 THR PRO GLY ARG PHE GLN GLY SER GLN LYS ASP ASN TRP SEQRES 20 A 485 GLY HIS PHE ARG LEU LYS LYS LEU LEU LYS ASP HIS ALA SEQRES 21 A 485 SER SER MET PRO ASN ALA GLU SER TRP PRO VAL VAL GLY SEQRES 22 A 485 GLN PHE SER SER VAL GLY SER LEU GLY ALA ASP GLU SER SEQRES 23 A 485 LYS TRP LEU CYS SER GLU PHE LYS GLU SER MET LEU THR SEQRES 24 A 485 LEU GLY LYS GLU SER LYS THR PRO GLY LYS SER SER VAL SEQRES 25 A 485 PRO LEU TYR LEU ILE TYR PRO SER VAL GLU ASN VAL ARG SEQRES 26 A 485 THR SER LEU GLU GLY TYR PRO ALA GLY GLY SER LEU PRO SEQRES 27 A 485 TYR SER ILE GLN THR ALA GLU LYS GLN ASN TRP LEU HIS SEQRES 28 A 485 SER TYR PHE HIS LYS TRP SER ALA GLU THR SER GLY ARG SEQRES 29 A 485 SER ASN ALA MET PRO HIS ILE LYS THR TYR MET ARG PRO SEQRES 30 A 485 SER PRO ASP PHE SER LYS ILE ALA TRP PHE LEU VAL THR SEQRES 31 A 485 SER ALA ASN LEU SER LYS ALA ALA TRP GLY ALA LEU GLU SEQRES 32 A 485 LYS ASN GLY THR GLN LEU MET ILE ARG SER TYR GLU LEU SEQRES 33 A 485 GLY VAL LEU PHE LEU PRO SER ALA LEU GLY LEU ASP SER SEQRES 34 A 485 PHE LYS VAL LYS GLN LYS PHE PHE ALA GLY SER GLN GLU SEQRES 35 A 485 PRO MET ALA THR PHE PRO VAL PRO TYR ASP LEU PRO PRO SEQRES 36 A 485 GLU LEU TYR GLY SER LYS ASP ARG PRO TRP ILE TRP ASN SEQRES 37 A 485 ILE PRO TYR VAL LYS ALA PRO ASP THR HIS GLY ASN MET SEQRES 38 A 485 TRP VAL PRO SER SEQRES 1 B 485 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 485 LEU VAL PRO ARG GLY SER HIS MET LEU GLU ASP PRO GLY SEQRES 3 B 485 GLU GLY GLN ASP ILE TRP ASP MET LEU ASP LYS GLY ASN SEQRES 4 B 485 PRO PHE GLN PHE TYR LEU THR ARG VAL SER GLY VAL LYS SEQRES 5 B 485 PRO LYS TYR ASN SER GLY ALA LEU HIS ILE LYS ASP ILE SEQRES 6 B 485 LEU SER PRO LEU PHE GLY THR LEU VAL SER SER ALA GLN SEQRES 7 B 485 PHE ASN TYR CYS PHE ASP VAL ASP TRP LEU VAL LYS GLN SEQRES 8 B 485 TYR PRO PRO GLU PHE ARG LYS LYS PRO ILE LEU LEU VAL SEQRES 9 B 485 HIS GLY ASP LYS ARG GLU ALA LYS ALA HIS LEU HIS ALA SEQRES 10 B 485 GLN ALA LYS PRO TYR GLU ASN ILE SER LEU CYS GLN ALA SEQRES 11 B 485 LYS LEU ASP ILE ALA PHE GLY THR HIS HIS THR LYS MET SEQRES 12 B 485 MET LEU LEU LEU TYR GLU GLU GLY LEU ARG VAL VAL ILE SEQRES 13 B 485 HIS THR SER ASN LEU ILE HIS ALA ASP TRP HIS GLN LYS SEQRES 14 B 485 THR GLN GLY ILE TRP LEU SER PRO LEU TYR PRO ARG ILE SEQRES 15 B 485 ALA ASP GLY THR HIS LYS SER GLY GLU SER PRO THR HIS SEQRES 16 B 485 PHE LYS ALA ASN LEU ILE SER TYR LEU THR ALA TYR ASN SEQRES 17 B 485 ALA PRO SER LEU LYS GLU TRP ILE ASP VAL ILE HIS LYS SEQRES 18 B 485 HIS ASP LEU SER GLU THR ASN VAL TYR LEU ILE GLY SER SEQRES 19 B 485 THR PRO GLY ARG PHE GLN GLY SER GLN LYS ASP ASN TRP SEQRES 20 B 485 GLY HIS PHE ARG LEU LYS LYS LEU LEU LYS ASP HIS ALA SEQRES 21 B 485 SER SER MET PRO ASN ALA GLU SER TRP PRO VAL VAL GLY SEQRES 22 B 485 GLN PHE SER SER VAL GLY SER LEU GLY ALA ASP GLU SER SEQRES 23 B 485 LYS TRP LEU CYS SER GLU PHE LYS GLU SER MET LEU THR SEQRES 24 B 485 LEU GLY LYS GLU SER LYS THR PRO GLY LYS SER SER VAL SEQRES 25 B 485 PRO LEU TYR LEU ILE TYR PRO SER VAL GLU ASN VAL ARG SEQRES 26 B 485 THR SER LEU GLU GLY TYR PRO ALA GLY GLY SER LEU PRO SEQRES 27 B 485 TYR SER ILE GLN THR ALA GLU LYS GLN ASN TRP LEU HIS SEQRES 28 B 485 SER TYR PHE HIS LYS TRP SER ALA GLU THR SER GLY ARG SEQRES 29 B 485 SER ASN ALA MET PRO HIS ILE LYS THR TYR MET ARG PRO SEQRES 30 B 485 SER PRO ASP PHE SER LYS ILE ALA TRP PHE LEU VAL THR SEQRES 31 B 485 SER ALA ASN LEU SER LYS ALA ALA TRP GLY ALA LEU GLU SEQRES 32 B 485 LYS ASN GLY THR GLN LEU MET ILE ARG SER TYR GLU LEU SEQRES 33 B 485 GLY VAL LEU PHE LEU PRO SER ALA LEU GLY LEU ASP SER SEQRES 34 B 485 PHE LYS VAL LYS GLN LYS PHE PHE ALA GLY SER GLN GLU SEQRES 35 B 485 PRO MET ALA THR PHE PRO VAL PRO TYR ASP LEU PRO PRO SEQRES 36 B 485 GLU LEU TYR GLY SER LYS ASP ARG PRO TRP ILE TRP ASN SEQRES 37 B 485 ILE PRO TYR VAL LYS ALA PRO ASP THR HIS GLY ASN MET SEQRES 38 B 485 TRP VAL PRO SER

HET VO4 A 699 3 HET VO4 B 699 3 HET SPM A 999 14 HET OTS A 995 11 HET OTS B 996 11

HETNAM VO4 VANADATE ION HETNAM SPM SPERMINE HETNAM OTS 4-(2S-AMINO-1-HYDROXYETHYL)PHENOL

HETSYN OTS S-OCTOPAMINE

FORMUL 5 VO4 2(O4 V 3-) FORMUL 7 SPM C10 H26 N4 FORMUL 8 OTS 2(C8 H11 N O2) FORMUL 10 HOH *184(H2 O)

HELIX 1 1 LYS A 175 SER A 180 5 6 HELIX 2 2 HIS A 184 LEU A 189 1 6 HELIX 3 3 SER A 190 GLY A 194 5 5 HELIX 4 4 ASP A 207 TYR A 215 1 9 HELIX 5 5 PRO A 216 ARG A 220 5 5 HELIX 6 6 LYS A 231 LYS A 243 1 13 HELIX 7 7 ILE A 285 HIS A 290 5 6 HELIX 8 8 HIS A 318 ALA A 329 1 12 HELIX 9 9 ALA A 332 LYS A 344 1 13 HELIX 10 10 SER A 365 ASN A 369 5 5 HELIX 11 11 TRP A 370 ALA A 383 1 14 HELIX 12 12 SER A 414 LEU A 421 1 8 HELIX 13 13 SER A 443 THR A 449 1 7 HELIX 14 14 GLY A 453 LEU A 460 5 8 HELIX 15 15 SER A 463 LYS A 469 1 7 HELIX 16 16 GLN A 470 SER A 475 5 6 HELIX 17 17 ALA A 482 GLY A 486 5 5 HELIX 18 18 SER A 518 GLY A 523 1 6 HELIX 19 19 LYS A 527 GLY A 529 5 3 HELIX 20 20 LEU A 544 GLY A 549 5 6 HELIX 21 21 LYS B 175 ASN B 179 5 5 HELIX 22 22 HIS B 184 LEU B 189 1 6 HELIX 23 23 SER B 190 GLY B 194 5 5 HELIX 24 24 ASP B 207 TYR B 215 1 9 HELIX 25 25 PRO B 216 ARG B 220 5 5 HELIX 26 26 LYS B 231 LYS B 243 1 13 HELIX 27 27 ILE B 285 HIS B 290 5 6 HELIX 28 28 HIS B 318 ALA B 329 1 12 HELIX 29 29 ALA B 332 LYS B 344 1 13 HELIX 30 30 SER B 365 LYS B 367 5 3 HELIX 31 31 TRP B 370 ALA B 383 1 14 HELIX 32 32 ASN B 388 TRP B 392 5 5 HELIX 33 33 SER B 414 LEU B 421 1 8 HELIX 34 34 SER B 443 THR B 449 1 7 HELIX 35 35 GLY B 453 LEU B 460 5 8 HELIX 36 36 SER B 463 GLU B 468 1 6 HELIX 37 37 LYS B 469 SER B 475 5 7 HELIX 38 38 ALA B 482 GLY B 486 5 5 HELIX 39 39 SER B 518 GLY B 523 1 6 HELIX 40 40 LEU B 544 GLY B 549 5 6

SHEET 1 A 7 PHE A 166 LEU A 168 0 SHEET 2 A 7 GLY A 295 LEU A 298 -1 O ILE A 296 N TYR A 167 SHEET 3 A 7 LEU A 275 HIS A 280 -1 N ILE A 279 O TRP A 297 SHEET 4 A 7 MET A 266 TYR A 271 -1 N LEU A 269 O ARG A 276 SHEET 5 A 7 LEU A 196 PHE A 202 -1 N PHE A 202 O MET A 266 SHEET 6 A 7 ILE A 224 HIS A 228 1 O LEU A 225 N GLN A 201 SHEET 7 A 7 ILE A 248 GLN A 252 1 O SER A 249 N LEU A 226 SHEET 1 B 7 TYR A 353 SER A 357 0 SHEET 2 B 7 GLU A 538 PHE A 543 -1 O LEU A 542 N TYR A 353 SHEET 3 B 7 LYS A 506 THR A 513 -1 N PHE A 510 O PHE A 543 SHEET 4 B 7 THR A 496 PRO A 500 -1 N TYR A 497 O LEU A 511 SHEET 5 B 7 VAL A 394 GLN A 397 -1 N VAL A 395 O MET A 498 SHEET 6 B 7 LEU A 437 ILE A 440 1 O ILE A 440 N GLY A 396 SHEET 7 B 7 PHE A 477 HIS A 478 1 O HIS A 478 N LEU A 439 SHEET 1 C 5 TYR A 353 SER A 357 0 SHEET 2 C 5 GLU A 538 PHE A 543 -1 O LEU A 542 N TYR A 353 SHEET 3 C 5 LYS A 506 THR A 513 -1 N PHE A 510 O PHE A 543 SHEET 4 C 5 PHE A 553 VAL A 555 -1 O PHE A 553 N ILE A 507 SHEET 5 C 5 THR A 569 PHE A 570 1 O PHE A 570 N LYS A 554 SHEET 1 D 3 GLY A 360 GLN A 363 0 SHEET 2 D 3 GLN A 531 ILE A 534 -1 O LEU A 532 N PHE A 362 SHEET 3 D 3 ALA A 524 GLU A 526 -1 N ALA A 524 O MET A 533 SHEET 1 E 7 PHE B 166 LEU B 168 0 SHEET 2 E 7 GLY B 295 LEU B 298 -1 O ILE B 296 N TYR B 167 SHEET 3 E 7 LEU B 275 HIS B 280 -1 N ILE B 279 O TRP B 297 SHEET 4 E 7 MET B 266 TYR B 271 -1 N MET B 267 O VAL B 278 SHEET 5 E 7 LEU B 196 PHE B 202 -1 N PHE B 202 O MET B 266 SHEET 6 E 7 ILE B 224 HIS B 228 1 O LEU B 225 N GLN B 201 SHEET 7 E 7 ILE B 248 GLN B 252 1 O CYS B 251 N LEU B 226 SHEET 1 F 7 TYR B 353 SER B 357 0 SHEET 2 F 7 GLU B 538 PHE B 543 -1 O LEU B 542 N TYR B 353 SHEET 3 F 7 LYS B 506 THR B 513 -1 N PHE B 510 O PHE B 543 SHEET 4 F 7 LYS B 495 PRO B 500 -1 N TYR B 497 O LEU B 511 SHEET 5 F 7 VAL B 394 GLN B 397 -1 N GLN B 397 O THR B 496 SHEET 6 F 7 LEU B 437 ILE B 440 1 O ILE B 440 N GLY B 396 SHEET 7 F 7 PHE B 477 HIS B 478 1 O HIS B 478 N LEU B 439 SHEET 1 G 4 TYR B 353 SER B 357 0 SHEET 2 G 4 GLU B 538 PHE B 543 -1 O LEU B 542 N TYR B 353 SHEET 3 G 4 LYS B 506 THR B 513 -1 N PHE B 510 O PHE B 543 SHEET 4 G 4 PHE B 553 LYS B 554 -1 O PHE B 553 N ILE B 507 SHEET 1 H 3 GLY B 360 GLN B 363 0 SHEET 2 H 3 GLN B 531 ILE B 534 -1 O LEU B 532 N PHE B 362 SHEET 3 H 3 ALA B 524 GLU B 526 -1 N GLU B 526 O GLN B 531

LINK O3' DG D 806 V VO4 A 699 1555 1555 1.75 LINK O3' DG F 806 V VO4 B 699 1555 1555 1.82 LINK NE2 HIS A 263 V VO4 A 699 1555 1555 2.02 LINK NE2 HIS B 263 V VO4 B 699 1555 1555 1.99 LINK O4 OTS A 995 V VO4 A 699 1555 1555 1.93 LINK O4 OTS B 996 V VO4 B 699 1555 1555 1.97

CISPEP 1 LEU A 576 PRO A 577 0 -5.09 CISPEP 2 LEU B 576 PRO B 577 0 -0.06

SITE 1 AC1 8 HIS A 263 LYS A 265 ASN A 283 HIS A 493 SITE 2 AC1 8 LYS A 495 ASN A 516 OTS A 995 DG D 806 SITE 1 AC2 8 HIS B 263 LYS B 265 ASN B 283 HIS B 493 SITE 2 AC2 8 LYS B 495 ASN B 516 OTS B 996 DG F 806 SITE 1 AC3 8 ASN A 591 TRP A 605 VAL A 606 PRO A 607 SITE 2 AC3 8 THR B 449 SER B 450 LEU B 451 THR B 600 SITE 1 AC4 7 TYR A 204 ASN A 283 GLY A 458 HIS A 493 SITE 2 AC4 7 VO4 A 699 HOH A 706 DG D 806 SITE 1 AC5 7 TYR B 204 GLY B 458 SER B 459 HIS B 493 SITE 2 AC5 7 HOH B 676 VO4 B 699 DG F 806

CRYST1 49.716 104.557 193.180 90.00 90.00 90.00 P 21 21 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.020114 0.000000 0.000000 0.00000

SCALE2 0.000000 0.009564 0.000000 0.00000

SCALE3 0.000000 0.000000 0.005177 0.00000