10 20 30 40 50 60 70 80 1RGD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING PROTEIN 06-JAN-95 1RGD
TITLE STRUCTURE REFINEMENT OF THE GLUCOCORTICOID RECEPTOR-DNA TITLE 2 BINDING DOMAIN FROM NMR DATA BY RELAXATION MATRIX TITLE 3 CALCULATIONS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116
KEYWDS DNA-BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 11
AUTHOR M.A.A.VAN TILBORG,A.M.J.J.BONVIN,K.HARD,A.DAVIS,B.MALER, AUTHOR 2 R.BOELENS,K.R.YAMAMOTO,R.KAPTEIN
REVDAT 2 24-FEB-09 1RGD 1 VERSN REVDAT 1 14-FEB-95 1RGD 0
JRNL AUTH M.A.VAN TILBORG,A.M.BONVIN,K.HARD,A.L.DAVIS, JRNL AUTH 2 B.MALER,R.BOELENS,K.R.YAMAMOTO,R.KAPTEIN JRNL TITL STRUCTURE REFINEMENT OF THE GLUCOCORTICOID JRNL TITL 2 RECEPTOR-DNA BINDING DOMAIN FROM NMR DATA BY JRNL TITL 3 RELAXATION MATRIX CALCULATIONS. JRNL REF J.MOL.BIOL. V. 247 689 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7723024 JRNL DOI 10.1006/JMBI.1995.0173
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.F.LUISI,W.X.XU,Z.OTWINOWSKI,L.P.FREEDMAN, REMARK 1 AUTH 2 K.R.YAMAMOTO,P.B.SIGLER REMARK 1 TITL CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF REMARK 1 TITL 2 THE GLUCOCORTICOID RECEPTOR WITH DNA REMARK 1 REF NATURE V. 352 497 1991 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.HARD,E.KELLENBACH,R.BOELENS,B.A.MALER,K.DAHLMAN, REMARK 1 AUTH 2 L.P.FREEDMAN,J.CARLSTEDT-DUKE,K.R.YAMAMOTO, REMARK 1 AUTH 3 J.-A.GUSTAFSSON,R.KAPTEIN REMARK 1 TITL SOLUTION STRUCTURE OF THE GLUCOCORTICOID RECEPTOR REMARK 1 TITL 2 DNA-BINDING DOMAIN REMARK 1 REF SCIENCE V. 249 157 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.HARD,E.KELLENBACH,R.BOELENS,R.KAPTEIN,K.DAHLMAN, REMARK 1 AUTH 2 J.CARLSTEDT-DUKE,L.P.FREEDMAN,B.A.MALER,E.HYDE, REMARK 1 AUTH 3 J.-A.GUSTAFSSON,K.R.YAMAMOTO REMARK 1 TITL 1H NMR STUDIES OF THE GLUCOCORTICOID RECEPTOR REMARK 1 TITL 2 DNA-BINDING DOMAIN: SEQUENTIAL ASSIGNMENTS AND REMARK 1 TITL 3 IDENTIFICATION OF SECONDARY STRUCTURE ELEMENTS REMARK 1 REF BIOCHEMISTRY V. 29 9015 1990 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : IRMA, DINOSAUR REMARK 3 AUTHORS : (IRMA), (DINOSAUR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1RGD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 CYS A 56 CA CYS A 56 CB -0.083 REMARK 500 3 CYS A 1 CA CYS A 1 CB -0.085 REMARK 500 3 LYS A 26 CA LYS A 26 CB -0.162 REMARK 500 4 LYS A 26 CA LYS A 26 CB -0.151 REMARK 500 5 CYS A 1 CA CYS A 1 CB -0.111 REMARK 500 5 LYS A 26 CA LYS A 26 CB -0.168 REMARK 500 6 LYS A 26 CA LYS A 26 CB -0.154 REMARK 500 6 CYS A 43 CA CYS A 43 CB -0.079 REMARK 500 7 CYS A 1 CA CYS A 1 CB -0.090 REMARK 500 7 LYS A 26 CA LYS A 26 CB -0.183 REMARK 500 10 CYS A 56 CA CYS A 56 CB -0.081 REMARK 500 11 LYS A 26 CA LYS A 26 CB -0.134 REMARK 500 11 CYS A 56 CA CYS A 56 CB -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 1 CB - CA - C ANGL. DEV. = 10.8 DEGREES REMARK 500 1 CYS A 1 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 1 LEU A 2 CA - CB - CG ANGL. DEV. = -24.6 DEGREES REMARK 500 1 VAL A 3 CA - CB - CG1 ANGL. DEV. = 15.7 DEGREES REMARK 500 1 CYS A 4 N - CA - CB ANGL. DEV. = 10.4 DEGREES REMARK 500 1 ALA A 8 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 1 GLU A 7 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 1 TYR A 13 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 1 TYR A 13 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 VAL A 15 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 1 CYS A 18 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 1 PHE A 24 CB - CG - CD2 ANGL. DEV. = -16.6 DEGREES REMARK 500 1 VAL A 29 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 1 VAL A 29 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 1 HIS A 33 CB - CG - CD2 ANGL. DEV. = -14.1 DEGREES REMARK 500 1 TYR A 35 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 1 TYR A 35 CB - CG - CD2 ANGL. DEV. = -19.8 DEGREES REMARK 500 1 TYR A 35 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 TYR A 35 CG - CD1 - CE1 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 ARG A 40 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 1 CYS A 43 CB - CA - C ANGL. DEV. = 11.0 DEGREES REMARK 500 1 CYS A 43 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 1 GLN A 63 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 2 CYS A 1 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 2 CYS A 1 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 2 LEU A 2 CA - CB - CG ANGL. DEV. = -23.7 DEGREES REMARK 500 2 VAL A 3 CA - CB - CG1 ANGL. DEV. = 18.7 DEGREES REMARK 500 2 CYS A 4 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 2 ALA A 8 N - CA - CB ANGL. DEV. = -17.2 DEGREES REMARK 500 2 GLU A 7 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 2 TYR A 13 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 2 TYR A 13 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 2 TYR A 13 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 2 TYR A 13 CB - CG - CD1 ANGL. DEV. = -17.8 DEGREES REMARK 500 2 TYR A 13 CG - CD2 - CE2 ANGL. DEV. = -4.9 DEGREES REMARK 500 2 TYR A 13 CD1 - CE1 - CZ ANGL. DEV. = -5.7 DEGREES REMARK 500 2 VAL A 15 CB - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 2 PHE A 24 CB - CG - CD2 ANGL. DEV. = -17.8 DEGREES REMARK 500 2 PHE A 25 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 LYS A 26 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 2 LYS A 26 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 2 HIS A 33 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 2 TYR A 35 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 2 TYR A 35 CB - CG - CD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 2 CYS A 43 CB - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 2 CYS A 43 CA - CB - SG ANGL. DEV. = 10.7 DEGREES REMARK 500 2 ILE A 44 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 2 ASP A 46 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 2 CYS A 56 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 2 CYS A 56 CA - CB - SG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 306 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 -74.95 -102.72 REMARK 500 1 SER A 5 12.51 87.00 REMARK 500 1 GLU A 7 124.55 -18.46 REMARK 500 1 CYS A 11 -168.38 48.62 REMARK 500 1 ASN A 34 116.56 73.55 REMARK 500 1 TYR A 35 72.89 -119.48 REMARK 500 1 LEU A 36 55.37 -69.52 REMARK 500 1 CYS A 37 179.63 38.41 REMARK 500 1 ALA A 38 20.26 -77.53 REMARK 500 1 ARG A 40 73.45 -116.03 REMARK 500 1 ASN A 41 65.61 16.46 REMARK 500 1 ASP A 42 70.07 69.21 REMARK 500 1 ASP A 46 -153.39 -140.39 REMARK 500 1 LYS A 47 -37.21 25.65 REMARK 500 1 ARG A 49 61.01 65.25 REMARK 500 1 CYS A 53 96.88 -175.78 REMARK 500 1 LEU A 68 -81.09 -9.40 REMARK 500 1 ALA A 70 82.92 18.13 REMARK 500 2 VAL A 3 -74.41 -95.42 REMARK 500 2 GLU A 7 134.56 -8.47 REMARK 500 2 CYS A 11 -73.66 142.96 REMARK 500 2 VAL A 15 140.38 -36.53 REMARK 500 2 LYS A 26 -74.60 -38.79 REMARK 500 2 LEU A 36 -101.70 70.40 REMARK 500 2 CYS A 37 80.79 -24.28 REMARK 500 2 ARG A 40 -89.73 -99.50 REMARK 500 2 ASN A 41 -12.12 89.70 REMARK 500 2 ILE A 44 86.02 -59.03 REMARK 500 2 ILE A 45 23.62 -70.04 REMARK 500 2 LYS A 47 -3.73 -57.07 REMARK 500 2 ARG A 49 -93.88 -124.83 REMARK 500 2 LYS A 51 -32.62 -147.32 REMARK 500 2 GLU A 69 47.68 -93.03 REMARK 500 2 ALA A 70 -58.03 63.86 REMARK 500 3 VAL A 3 -72.14 -95.79 REMARK 500 3 SER A 5 -9.01 81.34 REMARK 500 3 GLU A 7 140.64 -9.99 REMARK 500 3 CYS A 11 -76.34 61.08 REMARK 500 3 TYR A 13 -22.02 111.93 REMARK 500 3 LEU A 16 58.67 -68.77 REMARK 500 3 LEU A 36 112.01 62.02 REMARK 500 3 ALA A 38 17.87 56.50 REMARK 500 3 ASN A 41 56.13 -98.93 REMARK 500 3 ILE A 45 -43.87 80.42 REMARK 500 3 LYS A 47 -17.83 -33.72 REMARK 500 3 ARG A 50 167.75 91.88 REMARK 500 3 LYS A 51 81.15 -61.06 REMARK 500 3 ASN A 52 -66.95 -93.83 REMARK 500 3 LEU A 68 -8.17 -43.47 REMARK 500 3 ALA A 70 124.24 -30.56 REMARK 500 4 LEU A 2 -37.41 -38.18 REMARK 500 4 VAL A 3 -76.48 -86.22 REMARK 500 4 GLU A 7 138.42 3.14 REMARK 500 4 CYS A 11 142.01 9.56 REMARK 500 4 HIS A 12 -60.83 23.98 REMARK 500 4 LEU A 16 96.92 -68.30 REMARK 500 4 GLN A 32 83.31 -163.17 REMARK 500 4 LEU A 36 117.15 5.41 REMARK 500 4 ALA A 38 -72.81 -80.90 REMARK 500 4 ASN A 41 59.71 -57.39 REMARK 500 4 ASP A 42 49.12 -171.82 REMARK 500 4 ILE A 44 84.94 124.47 REMARK 500 4 ASP A 46 113.28 -16.30 REMARK 500 4 LYS A 47 -4.75 53.80 REMARK 500 4 PRO A 54 -71.76 -81.62 REMARK 500 4 LEU A 68 68.17 -52.89 REMARK 500 4 GLU A 69 109.27 111.62 REMARK 500 5 VAL A 3 -78.32 -101.11 REMARK 500 5 ASP A 6 75.24 -69.12 REMARK 500 5 GLU A 7 140.68 -12.51 REMARK 500 5 SER A 9 94.66 -166.51 REMARK 500 5 HIS A 12 94.41 -59.50 REMARK 500 5 LYS A 26 -70.83 -29.92 REMARK 500 5 TYR A 35 -28.66 -39.02 REMARK 500 5 LEU A 36 -107.86 84.16 REMARK 500 5 CYS A 37 155.22 69.57 REMARK 500 5 ASN A 41 32.01 -65.88 REMARK 500 5 ILE A 45 73.65 65.83 REMARK 500 5 LYS A 51 42.91 -86.51 REMARK 500 5 ASN A 52 22.35 -79.65 REMARK 500 5 CYS A 53 131.60 160.37 REMARK 500 5 ALA A 70 86.35 52.78 REMARK 500 6 VAL A 3 -80.44 -95.87 REMARK 500 6 SER A 5 11.45 58.95 REMARK 500 6 GLU A 7 135.59 -1.85 REMARK 500 6 SER A 9 51.59 -110.01 REMARK 500 6 HIS A 12 -130.68 60.15 REMARK 500 6 LEU A 16 48.69 -79.62 REMARK 500 6 GLN A 32 42.20 25.42 REMARK 500 6 CYS A 37 -150.87 -1.41 REMARK 500 6 ALA A 38 3.27 -68.56 REMARK 500 6 ASN A 41 89.08 -44.37 REMARK 500 6 ILE A 44 -80.33 -62.47 REMARK 500 6 ILE A 45 86.76 54.12 REMARK 500 6 ARG A 49 -59.74 151.76 REMARK 500 6 ARG A 50 54.85 28.16 REMARK 500 6 LYS A 51 42.10 -80.66 REMARK 500 6 CYS A 53 104.50 177.55 REMARK 500 6 ALA A 70 103.04 4.54 REMARK 500 7 VAL A 3 -78.12 -96.17 REMARK 500 7 GLU A 7 126.29 -15.76 REMARK 500 7 SER A 9 -81.31 -152.51 REMARK 500 7 HIS A 12 -80.63 54.59 REMARK 500 7 TYR A 13 79.47 -113.07 REMARK 500 7 CYS A 18 18.04 -56.82 REMARK 500 7 LEU A 36 106.62 -0.94 REMARK 500 7 CYS A 37 67.53 -58.43 REMARK 500 7 ALA A 38 -8.22 69.19 REMARK 500 7 ARG A 40 -74.81 -156.76 REMARK 500 7 ILE A 44 -80.93 -94.34 REMARK 500 7 ILE A 45 84.19 67.62 REMARK 500 7 ASN A 52 -16.57 73.03 REMARK 500 7 PRO A 54 -85.21 -41.60 REMARK 500 8 VAL A 3 -83.07 -90.63 REMARK 500 8 SER A 5 41.08 84.97 REMARK 500 8 GLU A 7 139.49 -8.15 REMARK 500 8 SER A 9 -137.19 -155.66 REMARK 500 8 HIS A 12 -179.34 -58.59 REMARK 500 8 TYR A 13 42.36 77.36 REMARK 500 8 LEU A 16 60.84 -102.38 REMARK 500 8 GLN A 32 85.71 66.37 REMARK 500 8 LEU A 36 102.17 -1.27 REMARK 500 8 CYS A 37 87.47 -65.04 REMARK 500 8 ASN A 41 48.77 -102.22 REMARK 500 8 ASP A 42 35.19 -79.48 REMARK 500 8 CYS A 43 95.63 -58.38 REMARK 500 8 ILE A 44 -79.41 -105.71 REMARK 500 8 ILE A 45 -57.25 84.60 REMARK 500 8 ASP A 46 -173.32 30.19 REMARK 500 8 ARG A 49 69.43 68.62 REMARK 500 8 LYS A 51 -48.49 71.79 REMARK 500 8 ASN A 52 -36.80 -38.66 REMARK 500 9 VAL A 3 -76.73 -82.42 REMARK 500 9 SER A 5 14.54 83.29 REMARK 500 9 GLU A 7 134.75 -16.97 REMARK 500 9 CYS A 11 -55.23 72.19 REMARK 500 9 GLN A 32 0.81 -156.17 REMARK 500 9 HIS A 33 -63.38 68.90 REMARK 500 9 LEU A 36 128.25 58.27 REMARK 500 9 ALA A 38 -4.90 73.44 REMARK 500 9 ASN A 41 48.66 -100.57 REMARK 500 9 CYS A 43 -158.58 12.00 REMARK 500 9 ILE A 44 123.88 80.94 REMARK 500 9 ARG A 50 76.75 -62.36 REMARK 500 9 CYS A 53 101.11 -45.92 REMARK 500 9 PRO A 54 -72.37 -36.37 REMARK 500 9 ALA A 70 39.75 -91.99 REMARK 500 10 VAL A 3 -74.64 -91.08 REMARK 500 10 ASP A 6 -93.31 42.39 REMARK 500 10 HIS A 12 -147.98 21.30 REMARK 500 10 TYR A 13 -2.98 81.46 REMARK 500 10 CYS A 18 31.10 -60.61 REMARK 500 10 LYS A 26 -83.36 -20.81 REMARK 500 10 GLU A 30 -83.50 -54.59 REMARK 500 10 GLN A 32 -67.55 51.59 REMARK 500 10 HIS A 33 -51.33 58.45 REMARK 500 10 ASN A 34 133.21 75.77 REMARK 500 10 LEU A 36 28.38 -55.97 REMARK 500 10 CYS A 37 -175.15 46.96 REMARK 500 10 ARG A 40 82.67 -48.98 REMARK 500 10 ASN A 41 61.33 -60.28 REMARK 500 10 ASP A 42 37.44 -148.81 REMARK 500 10 CYS A 43 89.34 -65.19 REMARK 500 10 ASP A 46 144.77 140.54 REMARK 500 10 ILE A 48 -58.14 64.31 REMARK 500 10 ARG A 49 -99.75 27.18 REMARK 500 10 ARG A 50 63.34 -111.14 REMARK 500 10 LEU A 68 -56.65 -18.61 REMARK 500 10 ALA A 70 49.67 38.09 REMARK 500 11 VAL A 3 -75.98 -110.08 REMARK 500 11 GLU A 7 112.53 12.18 REMARK 500 11 HIS A 12 -81.79 41.92 REMARK 500 11 CYS A 18 26.07 -58.79 REMARK 500 11 GLN A 32 -55.63 66.61 REMARK 500 11 HIS A 33 76.88 25.52 REMARK 500 11 ASN A 41 83.81 -21.62 REMARK 500 11 ASP A 42 38.34 -163.55 REMARK 500 11 ILE A 44 -95.14 -21.76 REMARK 500 11 ILE A 45 77.79 39.41 REMARK 500 11 ASP A 46 135.64 170.81 REMARK 500 11 LYS A 47 -24.15 73.31 REMARK 500 11 ASN A 52 26.02 -78.73 REMARK 500 11 CYS A 53 95.81 166.17 REMARK 500 11 ALA A 70 -27.46 68.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 13 0.24 SIDE_CHAIN REMARK 500 1 PHE A 24 0.21 SIDE_CHAIN REMARK 500 1 TYR A 35 0.18 SIDE_CHAIN REMARK 500 1 TYR A 58 0.07 SIDE_CHAIN REMARK 500 2 PHE A 24 0.25 SIDE_CHAIN REMARK 500 2 TYR A 35 0.10 SIDE_CHAIN REMARK 500 2 TYR A 58 0.09 SIDE_CHAIN REMARK 500 3 TYR A 13 0.12 SIDE_CHAIN REMARK 500 3 PHE A 24 0.30 SIDE_CHAIN REMARK 500 3 TYR A 35 0.14 SIDE_CHAIN REMARK 500 4 PHE A 24 0.26 SIDE_CHAIN REMARK 500 4 TYR A 35 0.12 SIDE_CHAIN REMARK 500 5 TYR A 13 0.13 SIDE_CHAIN REMARK 500 5 PHE A 24 0.27 SIDE_CHAIN REMARK 500 5 TYR A 35 0.12 SIDE_CHAIN REMARK 500 5 TYR A 58 0.12 SIDE_CHAIN REMARK 500 6 TYR A 13 0.09 SIDE_CHAIN REMARK 500 6 PHE A 24 0.28 SIDE_CHAIN REMARK 500 6 TYR A 35 0.13 SIDE_CHAIN REMARK 500 6 TYR A 58 0.08 SIDE_CHAIN REMARK 500 7 PHE A 24 0.27 SIDE_CHAIN REMARK 500 7 TYR A 35 0.10 SIDE_CHAIN REMARK 500 8 TYR A 13 0.06 SIDE_CHAIN REMARK 500 8 PHE A 24 0.27 SIDE_CHAIN REMARK 500 8 PHE A 25 0.13 SIDE_CHAIN REMARK 500 8 TYR A 35 0.10 SIDE_CHAIN REMARK 500 8 TYR A 58 0.09 SIDE_CHAIN REMARK 500 9 TYR A 13 0.13 SIDE_CHAIN REMARK 500 9 PHE A 24 0.27 SIDE_CHAIN REMARK 500 9 TYR A 35 0.10 SIDE_CHAIN REMARK 500 9 ARG A 50 0.08 SIDE_CHAIN REMARK 500 10 PHE A 24 0.07 SIDE_CHAIN REMARK 500 10 TYR A 35 0.10 SIDE_CHAIN REMARK 500 11 TYR A 13 0.20 SIDE_CHAIN REMARK 500 11 PHE A 24 0.10 SIDE_CHAIN REMARK 500 11 TYR A 35 0.23 SIDE_CHAIN REMARK 500 11 ARG A 71 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ASP A 6 11.18 REMARK 500 1 GLU A 7 10.50 REMARK 500 1 VAL A 15 -14.65 REMARK 500 1 LEU A 16 11.06 REMARK 500 1 SER A 20 -12.82 REMARK 500 1 PHE A 25 -14.57 REMARK 500 1 VAL A 29 10.74 REMARK 500 1 CYS A 37 10.91 REMARK 500 1 GLY A 39 -12.63 REMARK 500 1 ARG A 40 18.57 REMARK 500 1 ASN A 41 12.71 REMARK 500 1 CYS A 43 12.52 REMARK 500 1 ILE A 45 -15.95 REMARK 500 1 ASP A 46 -13.32 REMARK 500 1 ALA A 55 -11.52 REMARK 500 1 ARG A 57 -11.41 REMARK 500 1 ARG A 59 -12.69 REMARK 500 1 CYS A 61 -15.04 REMARK 500 1 ALA A 64 10.31 REMARK 500 1 GLU A 69 11.07 REMARK 500 2 SER A 5 -11.41 REMARK 500 2 SER A 20 -11.29 REMARK 500 2 PHE A 24 -14.08 REMARK 500 2 PHE A 25 -11.25 REMARK 500 2 ALA A 28 -10.72 REMARK 500 2 ARG A 40 16.04 REMARK 500 2 CYS A 43 12.25 REMARK 500 2 ALA A 55 -15.29 REMARK 500 2 ARG A 57 -11.29 REMARK 500 2 ARG A 59 -13.22 REMARK 500 2 CYS A 61 -14.88 REMARK 500 2 ALA A 64 11.01 REMARK 500 3 CYS A 4 10.55 REMARK 500 3 ASP A 6 11.54 REMARK 500 3 TYR A 13 11.00 REMARK 500 3 SER A 20 -11.03 REMARK 500 3 LYS A 22 -10.15 REMARK 500 3 PHE A 25 -12.50 REMARK 500 3 ARG A 40 -13.97 REMARK 500 3 ILE A 44 14.79 REMARK 500 3 ARG A 49 12.99 REMARK 500 3 ARG A 50 10.10 REMARK 500 3 ARG A 57 -16.45 REMARK 500 3 ARG A 59 -12.88 REMARK 500 3 CYS A 61 -16.87 REMARK 500 3 ALA A 64 11.37 REMARK 500 3 LEU A 68 -10.31 REMARK 500 3 GLU A 69 11.80 REMARK 500 4 SER A 5 -14.50 REMARK 500 4 ASP A 6 10.08 REMARK 500 4 GLU A 7 -12.22 REMARK 500 4 CYS A 11 -13.86 REMARK 500 4 TYR A 13 10.28 REMARK 500 4 VAL A 15 -10.11 REMARK 500 4 SER A 20 -12.88 REMARK 500 4 PHE A 24 -12.19 REMARK 500 4 PHE A 25 -16.75 REMARK 500 4 ALA A 28 -10.41 REMARK 500 4 ASN A 34 -10.24 REMARK 500 4 ARG A 40 13.64 REMARK 500 4 ASP A 42 10.13 REMARK 500 4 CYS A 43 -12.68 REMARK 500 4 ALA A 55 -16.24 REMARK 500 4 ARG A 59 -12.55 REMARK 500 4 CYS A 61 -12.96 REMARK 500 4 ALA A 64 10.04 REMARK 500 5 VAL A 3 -11.33 REMARK 500 5 CYS A 4 10.80 REMARK 500 5 ASP A 6 11.41 REMARK 500 5 VAL A 15 -15.19 REMARK 500 5 LEU A 16 14.49 REMARK 500 5 SER A 20 -10.46 REMARK 500 5 PHE A 25 -11.88 REMARK 500 5 ALA A 28 -10.44 REMARK 500 5 CYS A 43 -12.92 REMARK 500 5 ASP A 46 -10.31 REMARK 500 5 CYS A 56 -10.67 REMARK 500 5 ARG A 57 -13.65 REMARK 500 5 ARG A 59 -12.97 REMARK 500 5 CYS A 61 -13.76 REMARK 500 5 ALA A 64 11.25 REMARK 500 6 VAL A 3 -10.48 REMARK 500 6 CYS A 4 12.64 REMARK 500 6 ASP A 6 11.56 REMARK 500 6 GLU A 7 -11.65 REMARK 500 6 VAL A 15 -15.39 REMARK 500 6 PHE A 25 -12.18 REMARK 500 6 CYS A 37 11.77 REMARK 500 6 GLY A 39 -11.03 REMARK 500 6 ARG A 40 12.90 REMARK 500 6 ILE A 44 10.71 REMARK 500 6 ASP A 46 -12.75 REMARK 500 6 ARG A 57 -14.37 REMARK 500 6 ARG A 59 -13.65 REMARK 500 6 CYS A 61 -13.65 REMARK 500 6 ALA A 64 10.91 REMARK 500 7 VAL A 3 -12.10 REMARK 500 7 CYS A 4 11.28 REMARK 500 7 ASP A 6 10.44 REMARK 500 7 GLU A 7 -16.48 REMARK 500 7 VAL A 15 -10.22 REMARK 500 7 LEU A 16 13.20 REMARK 500 7 SER A 20 -11.23 REMARK 500 7 PHE A 24 -10.49 REMARK 500 7 PHE A 25 -13.29 REMARK 500 7 VAL A 29 -10.83 REMARK 500 7 ARG A 40 12.30 REMARK 500 7 CYS A 43 13.22 REMARK 500 7 ILE A 44 11.86 REMARK 500 7 ASP A 46 -10.57 REMARK 500 7 ALA A 55 -13.60 REMARK 500 7 CYS A 56 -13.58 REMARK 500 7 ARG A 57 -10.82 REMARK 500 7 ARG A 59 -13.37 REMARK 500 7 CYS A 61 -11.54 REMARK 500 8 SER A 5 -12.23 REMARK 500 8 ASP A 6 13.62 REMARK 500 8 GLU A 7 -12.16 REMARK 500 8 VAL A 15 -18.41 REMARK 500 8 LEU A 16 14.99 REMARK 500 8 SER A 20 -10.70 REMARK 500 8 LYS A 22 -10.50 REMARK 500 8 PHE A 24 -15.04 REMARK 500 8 ARG A 40 -15.73 REMARK 500 8 CYS A 43 10.25 REMARK 500 8 ILE A 44 14.95 REMARK 500 8 ALA A 55 -16.38 REMARK 500 8 CYS A 56 -11.84 REMARK 500 8 ARG A 59 -12.29 REMARK 500 8 CYS A 61 -12.88 REMARK 500 9 CYS A 4 10.66 REMARK 500 9 ASP A 6 12.25 REMARK 500 9 VAL A 15 -15.40 REMARK 500 9 LEU A 16 12.06 REMARK 500 9 SER A 20 -13.32 REMARK 500 9 LYS A 22 -10.37 REMARK 500 9 PHE A 25 -12.54 REMARK 500 9 VAL A 29 -12.02 REMARK 500 9 ARG A 40 -15.06 REMARK 500 9 ASN A 41 11.52 REMARK 500 9 ARG A 49 14.36 REMARK 500 9 ARG A 57 -13.39 REMARK 500 9 ARG A 59 -11.94 REMARK 500 9 CYS A 61 -11.64 REMARK 500 9 ALA A 64 12.33 REMARK 500 9 GLY A 65 -11.41 REMARK 500 10 CYS A 1 -10.56 REMARK 500 10 GLU A 7 18.91 REMARK 500 10 SER A 20 -10.31 REMARK 500 10 CYS A 21 -11.65 REMARK 500 10 LYS A 22 -10.89 REMARK 500 10 PHE A 24 -13.06 REMARK 500 10 PHE A 25 -10.18 REMARK 500 10 ARG A 40 10.39 REMARK 500 10 ALA A 55 -12.57 REMARK 500 10 CYS A 56 -12.60 REMARK 500 10 ARG A 59 -13.19 REMARK 500 10 CYS A 61 -17.32 REMARK 500 10 ALA A 64 10.16 REMARK 500 11 SER A 5 -16.46 REMARK 500 11 GLU A 7 -14.58 REMARK 500 11 LYS A 22 -12.45 REMARK 500 11 PHE A 25 -16.00 REMARK 500 11 ALA A 28 -11.75 REMARK 500 11 ARG A 40 15.53 REMARK 500 11 ARG A 49 -12.48 REMARK 500 11 PRO A 54 -11.78 REMARK 500 11 ARG A 57 -13.36 REMARK 500 11 TYR A 58 -10.30 REMARK 500 11 ARG A 59 -11.21 REMARK 500 11 CYS A 61 -16.25 REMARK 500 11 ALA A 64 11.78 REMARK 500 11 GLY A 65 -11.05 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 72 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 4 SG REMARK 620 2 CYS A 18 SG 107.4 REMARK 620 3 CYS A 1 SG 89.0 133.0 REMARK 620 4 CYS A 21 SG 137.5 87.1 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 73 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 CYS A 37 SG 129.4 REMARK 620 3 CYS A 56 SG 90.3 105.8 REMARK 620 4 CYS A 53 SG 108.1 93.5 135.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 72 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 73
DBREF 1RGD A 1 71 UNP P06536 GCR_RAT 440 510
SEQRES 1 A 71 CYS LEU VAL CYS SER ASP GLU ALA SER GLY CYS HIS TYR SEQRES 2 A 71 GLY VAL LEU THR CYS GLY SER CYS LYS VAL PHE PHE LYS SEQRES 3 A 71 ARG ALA VAL GLU GLY GLN HIS ASN TYR LEU CYS ALA GLY SEQRES 4 A 71 ARG ASN ASP CYS ILE ILE ASP LYS ILE ARG ARG LYS ASN SEQRES 5 A 71 CYS PRO ALA CYS ARG TYR ARG LYS CYS LEU GLN ALA GLY SEQRES 6 A 71 MET ASN LEU GLU ALA ARG
HET ZN A 72 1 HET ZN A 73 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 GLY A 19 GLU A 30 1 12 HELIX 2 2 PRO A 54 ALA A 64 1 11
LINK ZN ZN A 72 SG CYS A 4 1555 1555 2.57 LINK ZN ZN A 72 SG CYS A 18 1555 1555 2.29 LINK ZN ZN A 72 SG CYS A 1 1555 1555 2.42 LINK ZN ZN A 72 SG CYS A 21 1555 1555 2.61 LINK ZN ZN A 73 SG CYS A 43 1555 1555 2.50 LINK ZN ZN A 73 SG CYS A 37 1555 1555 2.50 LINK ZN ZN A 73 SG CYS A 56 1555 1555 2.74 LINK SG CYS A 53 ZN ZN A 73 1555 1555 2.87
SITE 1 AC1 5 CYS A 1 CYS A 4 CYS A 18 CYS A 21 SITE 2 AC1 5 ARG A 57 SITE 1 AC2 4 CYS A 37 CYS A 43 CYS A 53 CYS A 56
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000