1RDE - Header Asymmetric Unit

HEADER DNA 05-NOV-03 1RDE

TITLE NMR STRUCTURE OF THE THROMBIN-BINDING DNA APTAMER TITLE 2 STABILIZED BY SR2+

COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN-BINDING DNA APTAMER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE WAS SELETED FROM 10^13 DNA

KEYWDS THROMBIN-BINDING DNA, SR2+, QUADRUPLEX

EXPDTA SOLUTION NMR

NUMMDL 11

MDLTYP MINIMIZED AVERAGE

AUTHOR X.MAO,L.A.MARKY,W.H.GMEINER

REVDAT 3 24-FEB-09 1RDE 1 VERSN REVDAT 2 19-OCT-04 1RDE 1 JRNL REVDAT 1 11-NOV-03 1RDE 0

JRNL AUTH X.MAO,L.A.MARKY,W.H.GMEINER JRNL TITL NMR STRUCTURE OF THE THROMBIN-BINDING DNA APTAMER JRNL TITL 2 STABILIZED BY SR2+. JRNL REF J.BIOMOL.STRUCT.DYN. V. 22 25 2004 JRNL REFN ISSN 0739-1102 JRNL PMID 15214802

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1RDE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-03. REMARK 100 THE RCSB ID CODE IS RCSB020666.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : >3MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM STRAND, NATURAL ABUNDANT, REMARK 210 NO BUFFER, 100% D2O; 1MM REMARK 210 STRAND, NATURAL ABUNDANT, NO REMARK 210 BUFFER, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, E-COSY, REMARK 210 P31-H1 COSY, ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 11 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1RDE A 1 15 PDB 1RDE 1RDE 1 15

SEQRES 1 A 15 DG DG DT DT DG DG DT DG DT DG DG DT DT SEQRES 2 A 15 DG DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000