10 20 30 40 50 60 70 80 1R93 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 28-OCT-03 1R93
TITLE 3D STRUCTURE PREDICTION OF CLPP6 PROTEASE FROM ARABIDOPSIS TITLE 2 THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP TITLE 3 (1TYF)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.92
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 OTHER_DETAILS: ECOTYPE: COLUMBIA 0
KEYWDS SERINE PROTEASE, CLP PROTEASE, ARABIDOPSIS THALIANA
EXPDTA THEORETICAL MODEL
AUTHOR J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI,J.YTTERBERG, AUTHOR 2 L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK
REVDAT 2 10-FEB-04 1R93 1 JRNL REVDAT 1 18-NOV-03 1R93 0
JRNL AUTH J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI, JRNL AUTH 2 J.YTTERBERG,L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK JRNL TITL CLP PROTEASE COMPLEXES FROM PHOTOSYNTHETIC AND JRNL TITL 2 NON-PHOTOSYNTHETIC PLASTIDS AND MITOCHONDRIA OF JRNL TITL 3 PLANTS, THEIR PREDICTED THREE-DIMENSIONAL JRNL TITL 4 STRUCTURES, AND FUNCTIONAL IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 4768 2004 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER REMARK 3 AUTHORS : SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1R93 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-2003. REMARK 100 THE RCSB ID CODE IS RCSB020589.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 PHE A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 ARG A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 PHE A 26 REMARK 465 LEU A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 ASN A 30 REMARK 465 GLN A 31 REMARK 465 ARG A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 ILE A 35 REMARK 465 ARG A 36 REMARK 465 ARG A 37 REMARK 465 ILE A 38 REMARK 465 VAL A 39 REMARK 465 SER A 40 REMARK 465 ALA A 41 REMARK 465 LEU A 42 REMARK 465 GLN A 43 REMARK 465 SER A 44 REMARK 465 PRO A 45 REMARK 465 TYR A 46 REMARK 465 GLY A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 LEU A 50 REMARK 465 LYS A 51 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 LEU A 54 REMARK 465 SER A 55 REMARK 465 SER A 56 REMARK 465 ASN A 57 REMARK 465 VAL A 58 REMARK 465 SER A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 PRO A 62 REMARK 465 ILE A 63 REMARK 465 LYS A 64 REMARK 465 ILE A 65 REMARK 465 ASP A 66 REMARK 465 ASN A 67 REMARK 465 LYS A 68 REMARK 465 ALA A 69 REMARK 465 PRO A 70 REMARK 465 ARG A 71 REMARK 465 PHE A 72 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 ILE A 75 REMARK 465 GLU A 76 REMARK 465 ALA A 77 REMARK 465 LYS A 78 REMARK 465 LYS A 79 REMARK 465 GLY A 80 REMARK 465 ASN A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 VAL A 84 REMARK 465 MET A 85 REMARK 465 PRO A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 111 139.81 75.17 REMARK 500 SER A 175 -109.21 65.49
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AT1G11750 RELATED DB: TAIR
DBREF 1R93 A 1 271 GB 2827888 AAB99906 1 271
SEQRES 1 A 271 MET ALA GLY LEU ALA ILE SER PRO PRO LEU GLY LEU SER SEQRES 2 A 271 PHE SER SER ARG THR ARG ASN PRO LYS PRO THR SER PHE SEQRES 3 A 271 LEU SER HIS ASN GLN ARG ASN PRO ILE ARG ARG ILE VAL SEQRES 4 A 271 SER ALA LEU GLN SER PRO TYR GLY ASP SER LEU LYS ALA SEQRES 5 A 271 GLY LEU SER SER ASN VAL SER GLY SER PRO ILE LYS ILE SEQRES 6 A 271 ASP ASN LYS ALA PRO ARG PHE GLY VAL ILE GLU ALA LYS SEQRES 7 A 271 LYS GLY ASN PRO PRO VAL MET PRO SER VAL MET THR PRO SEQRES 8 A 271 GLY GLY PRO LEU ASP LEU SER SER VAL LEU PHE ARG ASN SEQRES 9 A 271 ARG ILE ILE PHE ILE GLY GLN PRO ILE ASN ALA GLN VAL SEQRES 10 A 271 ALA GLN ARG VAL ILE SER GLN LEU VAL THR LEU ALA SER SEQRES 11 A 271 ILE ASP ASP LYS SER ASP ILE LEU MET TYR LEU ASN CYS SEQRES 12 A 271 PRO GLY GLY SER THR TYR SER VAL LEU THR ILE TYR ASP SEQRES 13 A 271 CYS MET SER TRP ILE LYS PRO LYS VAL GLY THR VAL ALA SEQRES 14 A 271 PHE GLY VAL ALA ALA SER GLN GLY ALA PHE PHE LEU ALA SEQRES 15 A 271 GLY GLY GLU LYS GLY MET ARG TYR ALA MET PRO ASN THR SEQRES 16 A 271 ARG VAL MET ILE HIS GLN PRO GLN THR GLY CYS GLY GLY SEQRES 17 A 271 HIS VAL GLU ASP VAL ARG ARG GLN VAL ASN GLU ALA ILE SEQRES 18 A 271 GLU ALA ARG GLN LYS ILE ASP ARG MET TYR ALA ALA PHE SEQRES 19 A 271 THR GLY GLN PRO LEU GLU LYS VAL GLN GLN TYR THR GLU SEQRES 20 A 271 ARG ASP ARG PHE LEU SER ALA SER GLU ALA PHE GLU PHE SEQRES 21 A 271 GLY LEU ILE ASP GLY LEU LEU GLU THR GLU TYR
HELIX 1 1 PRO A 91 ASN A 104 1 14 HELIX 2 2 ASN A 114 ASP A 132 1 19 HELIX 3 3 SER A 147 ILE A 161 1 15 HELIX 4 4 SER A 175 GLY A 184 1 10 HELIX 5 5 HIS A 209 GLY A 236 1 28 HELIX 6 6 PRO A 238 GLU A 247 1 10 HELIX 7 7 SER A 253 GLY A 261 1 9
SHEET 1 A 4 ILE A 106 GLY A 110 0 SHEET 2 A 4 ILE A 137 CYS A 143 1 O TYR A 140 N ILE A 109 SHEET 3 A 4 VAL A 165 ALA A 173 1 O VAL A 168 N MET A 139 SHEET 4 A 4 TYR A 190 ARG A 196 1 O MET A 192 N ALA A 169
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000