1R91 - Header Asymmetric Unit

HEADER HYDROLASE 28-OCT-03 1R91

TITLE 3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS TITLE 2 THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP TITLE 3 (1TYF)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT COMPND 3 (CLPP4); COMPND 4 CHAIN: A; COMPND 5 EC: 3.4.21.92

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 OTHER_DETAILS: ECOTYPE: COLUMBIA 0

KEYWDS SERINE PROTEASE, CLP PROTEASE, ARABIDOPSIS THALIANA

EXPDTA THEORETICAL MODEL

AUTHOR J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI,J.YTTERBERG, AUTHOR 2 L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK

REVDAT 2 10-FEB-04 1R91 1 JRNL REVDAT 1 18-NOV-03 1R91 0

JRNL AUTH J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI, JRNL AUTH 2 J.YTTERBERG,L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK JRNL TITL CLP PROTEASE COMPLEXES FROM PHOTOSYNTHETIC AND JRNL TITL 2 NON-PHOTOSYNTHETIC PLASTIDS AND MITOCHONDRIA OF JRNL TITL 3 PLANTS, THEIR PREDICTED THREE-DIMENSIONAL JRNL TITL 4 STRUCTURES, AND FUNCTIONAL IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 4768 2004 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER REMARK 3 AUTHORS : SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1R91 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-2003. REMARK 100 THE RCSB ID CODE IS RCSB020587.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 PHE A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 PRO A 33 REMARK 465 ASN A 34 REMARK 465 ASN A 35 REMARK 465 LEU A 36 REMARK 465 TYR A 37 REMARK 465 LEU A 38 REMARK 465 LYS A 39 REMARK 465 PRO A 40 REMARK 465 THR A 41 REMARK 465 LYS A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 SER A 45 REMARK 465 PRO A 46 REMARK 465 PRO A 47 REMARK 465 LEU A 48 REMARK 465 ARG A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 SER A 52 REMARK 465 PRO A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 LEU A 56 REMARK 465 ARG A 57 REMARK 465 PHE A 58 REMARK 465 ALA A 59 REMARK 465 ASN A 60 REMARK 465 ALA A 61 REMARK 465 SER A 62 REMARK 465 ILE A 63 REMARK 465 GLU A 64 REMARK 465 MET A 65 REMARK 465 SER A 66 REMARK 465 GLN A 67 REMARK 465 THR A 68 REMARK 465 GLN A 69 REMARK 465 GLU A 70 REMARK 465 SER A 71

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AT5G45390 RELATED DB: TAIR

DBREF 1R91 A 1 292 GB 18422548 NP_568644 1 292

SEQRES 1 A 292 MET GLY THR LEU SER LEU SER SER SER LEU LYS PRO SER SEQRES 2 A 292 LEU VAL SER SER ARG LEU ASN SER SER SER SER ALA SER SEQRES 3 A 292 SER SER SER PHE PRO LYS PRO ASN ASN LEU TYR LEU LYS SEQRES 4 A 292 PRO THR LYS LEU ILE SER PRO PRO LEU ARG THR THR SER SEQRES 5 A 292 PRO SER PRO LEU ARG PHE ALA ASN ALA SER ILE GLU MET SEQRES 6 A 292 SER GLN THR GLN GLU SER ALA ILE ARG GLY ALA GLU SER SEQRES 7 A 292 ASP VAL MET GLY LEU LEU LEU ARG GLU ARG ILE VAL PHE SEQRES 8 A 292 LEU GLY SER SER ILE ASP ASP PHE VAL ALA ASP ALA ILE SEQRES 9 A 292 MET SER GLN LEU LEU LEU LEU ASP ALA LYS ASP PRO LYS SEQRES 10 A 292 LYS ASP ILE LYS LEU PHE ILE ASN SER PRO GLY GLY SER SEQRES 11 A 292 LEU SER ALA THR MET ALA ILE TYR ASP VAL VAL GLN LEU SEQRES 12 A 292 VAL ARG ALA ASP VAL SER THR ILE ALA LEU GLY ILE ALA SEQRES 13 A 292 ALA SER THR ALA SER ILE ILE LEU GLY ALA GLY THR LYS SEQRES 14 A 292 GLY LYS ARG PHE ALA MET PRO ASN THR ARG ILE MET ILE SEQRES 15 A 292 HIS GLN PRO LEU GLY GLY ALA SER GLY GLN ALA ILE ASP SEQRES 16 A 292 VAL GLU ILE GLN ALA LYS GLU VAL MET HIS ASN LYS ASN SEQRES 17 A 292 ASN VAL THR SER ILE ILE ALA GLY CYS THR SER ARG SER SEQRES 18 A 292 PHE GLU GLN VAL LEU LYS ASP ILE ASP ARG ASP ARG TYR SEQRES 19 A 292 MET SER PRO ILE GLU ALA VAL GLU TYR GLY LEU ILE ASP SEQRES 20 A 292 GLY VAL ILE ASP GLY ASP SER ILE ILE PRO LEU GLU PRO SEQRES 21 A 292 VAL PRO ASP ARG VAL LYS PRO ARG VAL ASN TYR GLU GLU SEQRES 22 A 292 ILE SER LYS ASP PRO MET LYS PHE LEU THR PRO GLU ILE SEQRES 23 A 292 PRO ASP ASP GLU ILE TYR

HELIX 1 1 ALA A 72 GLU A 87 1 16 HELIX 2 2 ASP A 97 ASP A 115 1 19 HELIX 3 3 SER A 130 VAL A 144 1 15 HELIX 4 4 SER A 158 ALA A 166 1 9 HELIX 5 5 GLN A 192 SER A 219 1 28 HELIX 6 6 SER A 221 ASP A 230 1 10 HELIX 7 7 SER A 236 GLY A 244 1 9 HELIX 8 8 SER A 254 GLU A 259 1 6 HELIX 9 9 GLU A 259 LYS A 266 1 8 HELIX 10 10 VAL A 269 ILE A 274 1 6 HELIX 11 11 SER A 275 THR A 283 1 9

SHEET 1 A 5 ILE A 89 GLY A 93 0 SHEET 2 A 5 ILE A 120 SER A 126 1 O LYS A 121 N VAL A 90 SHEET 3 A 5 VAL A 148 ALA A 157 1 O ILE A 151 N ILE A 124 SHEET 4 A 5 ARG A 179 ILE A 182 1 O ARG A 179 N ALA A 156 SHEET 5 A 5 ARG A 233 MET A 235 -1 O MET A 235 N ILE A 180 SHEET 1 B 5 ILE A 89 GLY A 93 0 SHEET 2 B 5 ILE A 120 SER A 126 1 O LYS A 121 N VAL A 90 SHEET 3 B 5 VAL A 148 ALA A 157 1 O ILE A 151 N ILE A 124 SHEET 4 B 5 ARG A 172 ALA A 174 1 O PHE A 173 N THR A 150 SHEET 5 B 5 GLY A 248 VAL A 249 1 O GLY A 248 N ALA A 174

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000