10 20 30 40 50 60 70 80 1R8Z - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 28-OCT-03 1R8Z
TITLE 3D STRUCTURE PREDICTION OF CLPP1 PROTEASE FROM ARABIDOPSIS TITLE 2 THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP TITLE 3 (1TYF)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE CLP; COMPND 5 EC: 3.4.21.92
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 OTHER_DETAILS: ECOTYPE: COLUMBIA 0
KEYWDS SERINE PROTEASE, CLP PROTEASE, ARABIDOPSIS THALIANA
EXPDTA THEORETICAL MODEL
AUTHOR J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI,J.YTTERBERG, AUTHOR 2 L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK
REVDAT 2 10-FEB-04 1R8Z 1 JRNL REVDAT 1 18-NOV-03 1R8Z 0
JRNL AUTH J.B.PELTIER,D.R.RIPOLL,G.FRISO,A.RUDELLA,Y.CAI, JRNL AUTH 2 J.YTTERBERG,L.GIACOMELLI,J.PILLARDY,K.J.VAN WIJK JRNL TITL CLP PROTEASE COMPLEXES FROM PHOTOSYNTHETIC AND JRNL TITL 2 NON-PHOTOSYNTHETIC PLASTIDS AND MITOCHONDRIA OF JRNL TITL 3 PLANTS, THEIR PREDICTED THREE-DIMENSIONAL JRNL TITL 4 STRUCTURES, AND FUNCTIONAL IMPLICATIONS. JRNL REF J.BIOL.CHEM. V. 279 4768 2004 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER REMARK 3 AUTHORS : SALI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1R8Z COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-2003. REMARK 100 THE RCSB ID CODE IS RCSB020585.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ILE A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 PHE A 10 REMARK 465 ARG A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -102.55 73.75 REMARK 500 THR A 113 -48.78 87.91 REMARK 500 PHE A 132 -92.90 82.59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 20 VAL A 21 148.35
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATCG00670 RELATED DB: TAIR
DBREF 1R8Z A 1 196 UNP P56772 CLPP_ARATH 1 196
SEQRES 1 A 196 MET PRO ILE GLY VAL PRO LYS VAL PRO PHE ARG SER PRO SEQRES 2 A 196 GLY GLU GLY ASP THR SER TRP VAL ASP ILE TYR ASN ARG SEQRES 3 A 196 LEU TYR ARG GLU ARG LEU PHE PHE LEU GLY GLN GLU VAL SEQRES 4 A 196 ASP THR GLU ILE SER ASN GLN LEU ILE SER LEU MET ILE SEQRES 5 A 196 TYR LEU SER ILE GLU LYS ASP THR LYS ASP LEU TYR LEU SEQRES 6 A 196 PHE ILE ASN SER PRO GLY GLY TRP VAL ILE SER GLY MET SEQRES 7 A 196 ALA ILE TYR ASP THR MET GLN PHE VAL ARG PRO ASP VAL SEQRES 8 A 196 GLN THR ILE CYS MET GLY LEU ALA ALA SER ILE ALA SER SEQRES 9 A 196 PHE ILE LEU VAL GLY GLY ALA ILE THR LYS ARG ILE ALA SEQRES 10 A 196 PHE PRO HIS ALA ARG VAL MET ILE HIS GLN PRO ALA SER SEQRES 11 A 196 SER PHE TYR GLU ALA GLN THR GLY GLU PHE ILE LEU GLU SEQRES 12 A 196 ALA GLU GLU LEU LEU LYS LEU ARG GLU THR ILE THR ARG SEQRES 13 A 196 VAL TYR VAL GLN ARG THR GLY LYS PRO ILE TRP VAL ILE SEQRES 14 A 196 SER GLU ASP MET GLU ARG ASP VAL PHE MET SER ALA THR SEQRES 15 A 196 GLU ALA GLN ALA HIS GLY ILE VAL ASP LEU VAL ALA VAL SEQRES 16 A 196 GLN
HELIX 1 1 ASP A 22 GLU A 30 1 9 HELIX 2 2 ASP A 40 LYS A 58 1 19 HELIX 3 3 TRP A 73 VAL A 87 1 15 HELIX 4 4 SER A 101 GLY A 109 1 9 HELIX 5 5 GLN A 136 GLY A 163 1 28 HELIX 6 6 PRO A 165 MET A 173 1 9 HELIX 7 7 SER A 180 GLY A 188 1 9
SHEET 1 A 5 LEU A 32 GLY A 36 0 SHEET 2 A 5 LEU A 63 SER A 69 1 O ASN A 68 N LEU A 35 SHEET 3 A 5 VAL A 91 ALA A 99 1 O ILE A 94 N LEU A 65 SHEET 4 A 5 ARG A 115 ILE A 125 1 O ILE A 116 N THR A 93 SHEET 5 A 5 VAL A 177 MET A 179 -1 O MET A 179 N VAL A 123
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000