10 20 30 40 50 60 70 80 1R5N - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSLATION 10-OCT-03 1R5N
TITLE CRYSTAL STRUCTURE ANALYSIS OF SUP35 COMPLEXED WITH GDP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP- COMPND 3 BINDING SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 196-662; COMPND 6 SYNONYM: ERF2, TRANSLATION RELEASE FACTOR 3, ERF3, ERF-3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 GENE: SUP35; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1
KEYWDS TRANSLATION TERMINATION, PEPTIDE RELEASE, GTPASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.KONG,H.SONG
REVDAT 2 24-FEB-09 1R5N 1 VERSN REVDAT 1 25-MAY-04 1R5N 0
JRNL AUTH C.KONG,K.ITO,M.A.WALSH,M.WADA,Y.LIU,S.KUMAR, JRNL AUTH 2 D.BARFORD,Y.NAKAMURA,H.SONG JRNL TITL CRYSTAL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE JRNL TITL 2 EUKARYOTIC CLASS II RELEASE FACTOR ERF3 FROM S. JRNL TITL 3 POMBE JRNL REF MOL.CELL V. 14 233 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15099522 JRNL DOI 10.1016/S1097-2765(04)00206-0
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.4960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -2.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.280 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.998 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3294 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3009 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4448 ; 1.252 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7017 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 5.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3600 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 635 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 893 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3939 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1898 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 119 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.049 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 1.020 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3278 ; 1.898 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 1.463 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1170 ; 2.602 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 1R5N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020467.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.07500 REMARK 200 R SYM FOR SHELL (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1R5B REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, ETHYLENE GLYCOL, PEG 8000, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.59900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.38150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.38150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.89850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.38150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.38150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.29950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.38150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.38150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.89850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.38150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.38150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.29950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.59900 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 196 REMARK 465 ALA A 197 REMARK 465 PRO A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 LEU A 202 REMARK 465 LYS A 203 REMARK 465 LYS A 204 REMARK 465 ALA A 205 REMARK 465 ALA A 206 REMARK 465 GLU A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 THR A 213 REMARK 465 VAL A 214 REMARK 465 GLU A 279 REMARK 465 ALA A 280 REMARK 465 GLY A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 SER A 284 REMARK 465 TRP A 285 REMARK 465 TYR A 286 REMARK 465 LEU A 287 REMARK 465 SER A 288 REMARK 465 TRP A 289 REMARK 465 ALA A 290 REMARK 465 LEU A 291 REMARK 465 ASP A 292 REMARK 465 SER A 293 REMARK 465 THR A 294 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 GLU A 297 REMARK 465 ARG A 298 REMARK 465 GLU A 299 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 LYS A 302 REMARK 465 THR A 303 REMARK 465 VAL A 304 REMARK 465 GLU A 305 REMARK 465 VAL A 306 REMARK 465 GLY A 307 REMARK 465 GLY A 325 REMARK 465 HIS A 326 REMARK 465 LYS A 327 REMARK 465 GLY A 328 REMARK 465 TYR A 329 REMARK 465 VAL A 330 REMARK 465 THR A 331 REMARK 465 ASN A 332 REMARK 465 MET A 333 REMARK 465 ILE A 334 REMARK 465 ASN A 335
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 228 NZ LYS A 231 2.16 REMARK 500 O GLU A 224 O HOH A 59 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 538 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 647 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 223 5.70 -69.27 REMARK 500 ASP A 226 120.04 78.74 REMARK 500 GLN A 227 116.29 57.55 REMARK 500 ASP A 232 -37.24 70.91 REMARK 500 TYR A 234 75.49 -113.55 REMARK 500 VAL A 247 -70.89 -37.57 REMARK 500 ALA A 337 39.98 -71.70 REMARK 500 PHE A 358 32.88 -92.74 REMARK 500 ARG A 360 -53.29 -27.58 REMARK 500 LYS A 385 37.76 72.23 REMARK 500 PRO A 389 -43.88 -27.11 REMARK 500 ASN A 433 33.48 74.92 REMARK 500 VAL A 434 -63.43 -109.56 REMARK 500 MET A 458 131.63 -37.40 REMARK 500 ASP A 479 -112.68 -171.68 REMARK 500 LEU A 480 34.52 -86.31 REMARK 500 LYS A 494 -139.35 -98.81 REMARK 500 ASP A 518 70.13 26.72 REMARK 500 ASP A 537 92.84 -64.71 REMARK 500 ASN A 552 78.30 -116.37 REMARK 500 ALA A 562 136.42 -172.63 REMARK 500 GLU A 568 25.91 -170.60 REMARK 500 PRO A 570 -15.27 -46.98 REMARK 500 SER A 571 101.16 72.84 REMARK 500 ILE A 572 178.23 175.50 REMARK 500 LEU A 573 128.99 40.03 REMARK 500 THR A 575 -156.66 51.27 REMARK 500 TYR A 577 109.28 25.17 REMARK 500 CYS A 579 -151.04 -138.63 REMARK 500 HIS A 584 -13.29 -170.71 REMARK 500 THR A 585 -5.48 161.40 REMARK 500 VAL A 587 94.32 62.13 REMARK 500 ALA A 593 30.04 -157.79 REMARK 500 LYS A 594 75.45 147.83 REMARK 500 LEU A 595 97.92 -52.67 REMARK 500 ASP A 600 149.46 -172.64 REMARK 500 LYS A 601 -82.86 29.19 REMARK 500 ASN A 603 90.82 -13.83 REMARK 500 LYS A 605 -126.17 153.33 REMARK 500 SER A 606 139.36 -178.49 REMARK 500 GLN A 648 72.30 29.00 REMARK 500 VAL A 652 -56.15 -161.85 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 663
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R5B RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGAND REMARK 900 RELATED ID: 1R5O RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GMPPNP
DBREF 1R5N A 196 662 UNP O74718 ERF2_SCHPO 196 662
SEQRES 1 A 467 SER ALA PRO ALA ALA ALA LEU LYS LYS ALA ALA GLU ALA SEQRES 2 A 467 ALA GLU PRO ALA THR VAL THR GLU ASP ALA THR ASP LEU SEQRES 3 A 467 GLN ASN GLU VAL ASP GLN GLU LEU LEU LYS ASP MET TYR SEQRES 4 A 467 GLY LYS GLU HIS VAL ASN ILE VAL PHE ILE GLY HIS VAL SEQRES 5 A 467 ASP ALA GLY LYS SER THR LEU GLY GLY ASN ILE LEU PHE SEQRES 6 A 467 LEU THR GLY MET VAL ASP LYS ARG THR MET GLU LYS ILE SEQRES 7 A 467 GLU ARG GLU ALA LYS GLU ALA GLY LYS GLU SER TRP TYR SEQRES 8 A 467 LEU SER TRP ALA LEU ASP SER THR SER GLU GLU ARG GLU SEQRES 9 A 467 LYS GLY LYS THR VAL GLU VAL GLY ARG ALA TYR PHE GLU SEQRES 10 A 467 THR GLU HIS ARG ARG PHE SER LEU LEU ASP ALA PRO GLY SEQRES 11 A 467 HIS LYS GLY TYR VAL THR ASN MET ILE ASN GLY ALA SER SEQRES 12 A 467 GLN ALA ASP ILE GLY VAL LEU VAL ILE SER ALA ARG ARG SEQRES 13 A 467 GLY GLU PHE GLU ALA GLY PHE GLU ARG GLY GLY GLN THR SEQRES 14 A 467 ARG GLU HIS ALA VAL LEU ALA ARG THR GLN GLY ILE ASN SEQRES 15 A 467 HIS LEU VAL VAL VAL ILE ASN LYS MET ASP GLU PRO SER SEQRES 16 A 467 VAL GLN TRP SER GLU GLU ARG TYR LYS GLU CYS VAL ASP SEQRES 17 A 467 LYS LEU SER MET PHE LEU ARG ARG VAL ALA GLY TYR ASN SEQRES 18 A 467 SER LYS THR ASP VAL LYS TYR MET PRO VAL SER ALA TYR SEQRES 19 A 467 THR GLY GLN ASN VAL LYS ASP ARG VAL ASP SER SER VAL SEQRES 20 A 467 CYS PRO TRP TYR GLN GLY PRO SER LEU LEU GLU TYR LEU SEQRES 21 A 467 ASP SER MET THR HIS LEU GLU ARG LYS VAL ASN ALA PRO SEQRES 22 A 467 PHE ILE MET PRO ILE ALA SER LYS TYR LYS ASP LEU GLY SEQRES 23 A 467 THR ILE LEU GLU GLY LYS ILE GLU ALA GLY SER ILE LYS SEQRES 24 A 467 LYS ASN SER ASN VAL LEU VAL MET PRO ILE ASN GLN THR SEQRES 25 A 467 LEU GLU VAL THR ALA ILE TYR ASP GLU ALA ASP GLU GLU SEQRES 26 A 467 ILE SER SER SER ILE CYS GLY ASP GLN VAL ARG LEU ARG SEQRES 27 A 467 VAL ARG GLY ASP ASP SER ASP VAL GLN THR GLY TYR VAL SEQRES 28 A 467 LEU THR SER THR LYS ASN PRO VAL HIS ALA THR THR ARG SEQRES 29 A 467 PHE ILE ALA GLN ILE ALA ILE LEU GLU LEU PRO SER ILE SEQRES 30 A 467 LEU THR THR GLY TYR SER CYS VAL MET HIS ILE HIS THR SEQRES 31 A 467 ALA VAL GLU GLU VAL SER PHE ALA LYS LEU LEU HIS LYS SEQRES 32 A 467 LEU ASP LYS THR ASN ARG LYS SER LYS LYS PRO PRO MET SEQRES 33 A 467 PHE ALA THR LYS GLY MET LYS ILE ILE ALA GLU LEU GLU SEQRES 34 A 467 THR GLN THR PRO VAL CYS MET GLU ARG PHE GLU ASP TYR SEQRES 35 A 467 GLN TYR MET GLY ARG PHE THR LEU ARG ASP GLN GLY THR SEQRES 36 A 467 THR VAL ALA VAL GLY LYS VAL VAL LYS ILE LEU ASP
HET GDP A 663 28
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *75(H2 O)
HELIX 1 1 LEU A 221 VAL A 225 5 5 HELIX 2 2 GLY A 250 THR A 262 1 13 HELIX 3 3 ASP A 266 LYS A 278 1 13 HELIX 4 4 GLY A 352 GLY A 357 1 6 HELIX 5 5 GLN A 363 GLN A 374 1 12 HELIX 6 6 SER A 394 GLY A 414 1 21 HELIX 7 7 SER A 450 MET A 458 1 9 HELIX 8 8 LEU A 461 ASN A 466 1 6 HELIX 9 9 TYR A 637 MET A 640 5 4
SHEET 1 A 6 TYR A 310 GLU A 312 0 SHEET 2 A 6 ARG A 316 LEU A 321 -1 O PHE A 318 N PHE A 311 SHEET 3 A 6 GLU A 237 GLY A 245 1 N GLU A 237 O ARG A 317 SHEET 4 A 6 ILE A 342 SER A 348 1 O VAL A 344 N ILE A 244 SHEET 5 A 6 LEU A 379 ASN A 384 1 O VAL A 382 N LEU A 345 SHEET 6 A 6 LYS A 422 PRO A 425 1 O MET A 424 N ILE A 383 SHEET 1 B 7 ILE A 470 PRO A 472 0 SHEET 2 B 7 VAL A 546 THR A 548 -1 O LEU A 547 N MET A 471 SHEET 3 B 7 ASN A 498 MET A 502 -1 N LEU A 500 O THR A 548 SHEET 4 B 7 GLN A 506 TYR A 514 -1 O GLN A 506 N VAL A 501 SHEET 5 B 7 GLN A 529 ARG A 535 -1 O ARG A 531 N TYR A 514 SHEET 6 B 7 THR A 482 LYS A 487 -1 N GLY A 486 O VAL A 530 SHEET 7 B 7 SER A 475 LYS A 478 -1 N TYR A 477 O ILE A 483 SHEET 1 C 5 ILE A 470 PRO A 472 0 SHEET 2 C 5 VAL A 546 THR A 548 -1 O LEU A 547 N MET A 471 SHEET 3 C 5 ASN A 498 MET A 502 -1 N LEU A 500 O THR A 548 SHEET 4 C 5 GLN A 506 TYR A 514 -1 O GLN A 506 N VAL A 501 SHEET 5 C 5 GLU A 520 ILE A 521 -1 O ILE A 521 N ILE A 513 SHEET 1 D 2 SER A 492 ILE A 493 0 SHEET 2 D 2 SER A 524 ILE A 525 -1 O SER A 524 N ILE A 493 SHEET 1 E 7 HIS A 555 ILE A 566 0 SHEET 2 E 7 LYS A 618 MET A 631 -1 O ILE A 619 N ILE A 564 SHEET 3 E 7 GLU A 588 LYS A 598 -1 N HIS A 597 O ILE A 620 SHEET 4 E 7 SER A 578 MET A 581 -1 N MET A 581 O GLU A 588 SHEET 5 E 7 ARG A 642 ASP A 647 -1 O ARG A 646 N VAL A 580 SHEET 6 E 7 THR A 650 ILE A 660 -1 O GLY A 655 N PHE A 643 SHEET 7 E 7 HIS A 555 ILE A 566 -1 N ILE A 561 O LYS A 659
CISPEP 1 MET A 502 PRO A 503 0 8.05
SITE 1 AC1 16 HIS A 246 VAL A 247 ASP A 248 ALA A 249 SITE 2 AC1 16 GLY A 250 LYS A 251 SER A 252 THR A 253 SITE 3 AC1 16 LYS A 278 ASN A 384 LYS A 385 ASP A 387 SITE 4 AC1 16 GLU A 388 SER A 427 ALA A 428 TYR A 429
CRYST1 82.763 82.763 169.198 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012083 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012083 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005910 0.00000