10 20 30 40 50 60 70 80 1R2T - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 29-SEP-03 1R2T
TITLE CRYSTAL STRUCTURE OF RABBIT MUSCLE TRIOSEPHOSPHATE ISOMERASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM; COMPND 5 EC: 5.3.1.1
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: MUSCLE
KEYWDS TIM; CLOSED LOOP CONFORMATION IN THE LIGAND-FREE STATE; KEYWDS 2 CONFORMATIONAL HETEROGENEITY; TIM-BARREL, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.APARICIO,S.T.FERREIRA,I.POLIKARPOV
REVDAT 3 13-JUL-11 1R2T 1 VERSN REVDAT 2 24-FEB-09 1R2T 1 VERSN REVDAT 1 23-DEC-03 1R2T 0
JRNL AUTH R.APARICIO,S.T.FERREIRA,I.POLIKARPOV JRNL TITL CLOSED CONFORMATION OF THE ACTIVE SITE LOOP OF RABBIT MUSCLE JRNL TITL 2 TRIOSEPHOSPHATE ISOMERASE IN THE ABSENCE OF SUBSTRATE: JRNL TITL 3 EVIDENCE OF CONFORMATIONAL HETEROGENEITY. JRNL REF J.MOL.BIOL. V. 334 1023 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14643664 JRNL DOI 10.1016/J.JMB.2003.10.022
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.APARICIO,S.T.FERREIRA,I.POLIKARPOV,N.R.LEITE REMARK 1 TITL PRELIMINARY X-RAY DIFFRACTION STUDIES OF RABBIT MUSCLE REMARK 1 TITL 2 TRIOSE PHOSPHATE ISOMERASE (TIM) REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 56 1492 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444900011380
REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 19784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1032 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.453 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3801 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5148 ; 1.309 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 5.684 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2828 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1897 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 304 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.267 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2433 ; 0.568 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3911 ; 1.071 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 1.613 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1237 ; 2.731 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 26 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 22 2 REMARK 3 1 B 4 B 22 2 REMARK 3 2 A 24 A 31 2 REMARK 3 2 B 24 B 31 2 REMARK 3 3 A 32 A 32 3 REMARK 3 3 B 32 B 32 3 REMARK 3 4 A 33 A 55 2 REMARK 3 4 B 33 B 55 2 REMARK 3 5 A 56 A 56 3 REMARK 3 5 B 56 B 56 3 REMARK 3 6 A 57 A 83 2 REMARK 3 6 B 57 B 83 2 REMARK 3 7 A 84 A 84 3 REMARK 3 7 B 84 B 84 3 REMARK 3 8 A 85 A 134 2 REMARK 3 8 B 85 B 134 2 REMARK 3 9 A 135 A 135 3 REMARK 3 9 B 135 B 135 3 REMARK 3 10 A 136 A 144 2 REMARK 3 10 B 136 B 144 2 REMARK 3 11 A 145 A 145 3 REMARK 3 11 B 145 B 145 3 REMARK 3 12 A 146 A 161 2 REMARK 3 12 B 146 B 161 2 REMARK 3 13 A 162 A 162 3 REMARK 3 13 B 162 B 162 3 REMARK 3 14 A 163 A 168 2 REMARK 3 14 B 163 B 168 2 REMARK 3 15 A 169 A 172 5 REMARK 3 15 B 169 B 172 5 REMARK 3 16 A 175 A 176 5 REMARK 3 16 B 175 B 176 5 REMARK 3 17 A 177 A 178 2 REMARK 3 17 B 177 B 178 2 REMARK 3 18 A 179 A 179 3 REMARK 3 18 B 179 B 179 3 REMARK 3 19 A 180 A 182 2 REMARK 3 19 B 180 B 182 2 REMARK 3 20 A 183 A 183 3 REMARK 3 20 B 183 B 183 3 REMARK 3 21 A 184 A 185 2 REMARK 3 21 B 184 B 185 2 REMARK 3 22 A 186 A 186 3 REMARK 3 22 B 186 B 186 3 REMARK 3 23 A 187 A 192 3 REMARK 3 23 B 187 B 192 3 REMARK 3 24 A 193 A 202 5 REMARK 3 24 B 193 B 202 5 REMARK 3 25 A 203 A 213 3 REMARK 3 25 B 203 B 213 3 REMARK 3 26 A 214 A 246 2 REMARK 3 26 B 214 B 246 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1663 ; 0.06 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 106 ; 0.53 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1663 ; 0.76 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 106 ; 2.15 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3392 19.0229 -8.6251 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.1052 REMARK 3 T33: 0.0898 T12: 0.0035 REMARK 3 T13: -0.0388 T23: -0.0676 REMARK 3 L TENSOR REMARK 3 L11: 2.6360 L22: 3.4047 REMARK 3 L33: 0.6004 L12: -1.8382 REMARK 3 L13: 0.0567 L23: -0.6351 REMARK 3 S TENSOR REMARK 3 S11: 0.1777 S12: 0.2704 S13: -0.5115 REMARK 3 S21: -0.3536 S22: -0.2154 S23: 0.3754 REMARK 3 S31: 0.0602 S32: 0.0432 S33: 0.0377 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 248 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9931 48.5565 8.7683 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1067 REMARK 3 T33: 0.0696 T12: 0.0486 REMARK 3 T13: -0.0326 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 1.6683 L22: 2.4442 REMARK 3 L33: 1.9469 L12: -0.2360 REMARK 3 L13: 0.2604 L23: 0.9084 REMARK 3 S TENSOR REMARK 3 S11: -0.1896 S12: -0.2055 S13: 0.2521 REMARK 3 S21: 0.1909 S22: 0.0506 S23: 0.1044 REMARK 3 S31: -0.2266 S32: -0.2010 S33: 0.1390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1R2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020366.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 85 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.31 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.930 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.83 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HTI REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.57950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.62600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.01750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.62600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.57950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.01750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS REMARK 300 ONE PHYSIOLOGICALLY ACTIVE DIMER FORMED BY CHAINS {A,B}
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA B 1
REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY B 214
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 145 CD OE1 OE2 REMARK 480 GLN A 179 CD OE1 NE2 REMARK 480 LYS A 187 CE NZ REMARK 480 LYS B 32 CG CD CE NZ REMARK 480 LYS B 58 CG CD CE NZ REMARK 480 LYS B 141 CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 140 NZ LYS A 187 1.62 REMARK 500 NZ LYS B 218 O GLN B 248 1.88 REMARK 500 O GLN B 223 O HOH B 396 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 323 O HOH B 341 2564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 145 CD GLU A 145 OE1 -0.245 REMARK 500 GLU A 145 CD GLU A 145 OE2 0.161 REMARK 500 GLN A 179 CG GLN A 179 CD -0.572 REMARK 500 LYS B 32 CB LYS B 32 CG -0.408 REMARK 500 LYS B 141 CD LYS B 141 CE -0.211 REMARK 500 GLY B 214 C ALA B 215 N -0.234 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 56 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLU A 145 CB - CG - CD ANGL. DEV. = 19.0 DEGREES REMARK 500 GLU A 145 OE1 - CD - OE2 ANGL. DEV. = 9.7 DEGREES REMARK 500 GLU A 145 CG - CD - OE2 ANGL. DEV. = -20.3 DEGREES REMARK 500 GLN A 179 CB - CG - CD ANGL. DEV. = 19.5 DEGREES REMARK 500 LYS B 32 CA - CB - CG ANGL. DEV. = 32.1 DEGREES REMARK 500 LYS B 32 CB - CG - CD ANGL. DEV. = 24.2 DEGREES REMARK 500 LYS B 141 CD - CE - NZ ANGL. DEV. = -15.9 DEGREES REMARK 500 THR B 213 CA - C - N ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -146.50 49.70 REMARK 500 ILE A 138 31.06 -99.69 REMARK 500 VAL A 196 -79.59 -117.52 REMARK 500 SER B 3 168.40 -48.78 REMARK 500 LYS B 13 -144.48 50.92 REMARK 500 THR B 172 -48.34 -23.38 REMARK 500 VAL B 196 -80.58 -110.57 REMARK 500 THR B 213 -154.62 -115.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 213 -16.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 311 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 355 DISTANCE = 5.28 ANGSTROMS REMARK 525 HOH B 265 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B 296 DISTANCE = 5.17 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R2R RELATED DB: PDB REMARK 900 RELATED ID: 1R2S RELATED DB: PDB
DBREF 1R2T A 1 248 UNP P00939 TPIS_RABIT 1 248 DBREF 1R2T B 1 248 UNP P00939 TPIS_RABIT 1 248
SEQRES 1 A 248 ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 A 248 MET ASN GLY ARG LYS LYS ASN LEU GLY GLU LEU ILE THR SEQRES 3 A 248 THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU VAL SEQRES 4 A 248 VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA ARG SEQRES 5 A 248 GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN ASN SEQRES 6 A 248 CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU ILE SEQRES 7 A 248 SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP VAL SEQRES 8 A 248 VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 A 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 A 248 SER GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 A 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 A 248 PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS ASP SEQRES 13 A 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 A 248 ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN SEQRES 15 A 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER ASN SEQRES 16 A 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 A 248 GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU ALA SEQRES 18 A 248 SER GLN PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 A 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 A 248 GLN SEQRES 1 B 248 ALA PRO SER ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS SEQRES 2 B 248 MET ASN GLY ARG LYS LYS ASN LEU GLY GLU LEU ILE THR SEQRES 3 B 248 THR LEU ASN ALA ALA LYS VAL PRO ALA ASP THR GLU VAL SEQRES 4 B 248 VAL CYS ALA PRO PRO THR ALA TYR ILE ASP PHE ALA ARG SEQRES 5 B 248 GLN LYS LEU ASP PRO LYS ILE ALA VAL ALA ALA GLN ASN SEQRES 6 B 248 CYS TYR LYS VAL THR ASN GLY ALA PHE THR GLY GLU ILE SEQRES 7 B 248 SER PRO GLY MET ILE LYS ASP CYS GLY ALA THR TRP VAL SEQRES 8 B 248 VAL LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SEQRES 9 B 248 SER ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU SEQRES 10 B 248 SER GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS SEQRES 11 B 248 LEU ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL SEQRES 12 B 248 PHE GLU GLN THR LYS VAL ILE ALA ASP ASN VAL LYS ASP SEQRES 13 B 248 TRP SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA SEQRES 14 B 248 ILE GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN SEQRES 15 B 248 GLU VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS SER ASN SEQRES 16 B 248 VAL SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR SEQRES 17 B 248 GLY GLY SER VAL THR GLY ALA THR CYS LYS GLU LEU ALA SEQRES 18 B 248 SER GLN PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SEQRES 19 B 248 SER LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS SEQRES 20 B 248 GLN
FORMUL 3 HOH *335(H2 O)
HELIX 1 1 ARG A 17 ALA A 31 1 15 HELIX 2 2 PRO A 44 ALA A 46 5 3 HELIX 3 3 TYR A 47 LEU A 55 1 9 HELIX 4 4 SER A 79 CYS A 86 1 8 HELIX 5 5 HIS A 95 VAL A 101 1 7 HELIX 6 6 SER A 105 GLU A 119 1 15 HELIX 7 7 LYS A 130 ALA A 136 1 7 HELIX 8 8 ILE A 138 ASN A 153 1 16 HELIX 9 9 ASP A 156 SER A 158 5 3 HELIX 10 10 PRO A 166 ILE A 170 5 5 HELIX 11 11 THR A 177 VAL A 196 1 20 HELIX 12 12 SER A 197 THR A 204 1 8 HELIX 13 13 THR A 216 SER A 222 1 7 HELIX 14 14 GLY A 232 LYS A 237 5 6 HELIX 15 15 PRO A 238 ASN A 245 1 8 HELIX 16 16 ARG B 17 ALA B 31 1 15 HELIX 17 17 PRO B 44 ALA B 46 5 3 HELIX 18 18 TYR B 47 LEU B 55 1 9 HELIX 19 19 SER B 79 CYS B 86 1 8 HELIX 20 20 HIS B 95 VAL B 101 1 7 HELIX 21 21 SER B 105 GLU B 119 1 15 HELIX 22 22 LYS B 130 ALA B 136 1 7 HELIX 23 23 ILE B 138 ASN B 153 1 16 HELIX 24 24 ASP B 156 SER B 158 5 3 HELIX 25 25 PRO B 166 ILE B 170 5 5 HELIX 26 26 THR B 177 VAL B 196 1 20 HELIX 27 27 SER B 197 THR B 204 1 8 HELIX 28 28 THR B 216 SER B 222 1 7 HELIX 29 29 GLY B 232 LYS B 237 5 6 HELIX 30 30 PRO B 238 ASN B 245 1 8
SHEET 1 A 9 PHE A 6 ASN A 11 0 SHEET 2 A 9 THR A 37 ALA A 42 1 O ALA A 42 N GLY A 10 SHEET 3 A 9 ILE A 59 ALA A 63 1 O ALA A 60 N VAL A 39 SHEET 4 A 9 TRP A 90 LEU A 93 1 O TRP A 90 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O ILE A 124 N LEU A 93 SHEET 6 A 9 VAL A 160 TYR A 164 1 O VAL A 161 N ALA A 125 SHEET 7 A 9 ILE A 206 TYR A 208 1 O ILE A 207 N LEU A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 11 1 N GLY A 9 O VAL A 231 SHEET 1 B 9 PHE B 6 ASN B 11 0 SHEET 2 B 9 THR B 37 ALA B 42 1 O ALA B 42 N GLY B 10 SHEET 3 B 9 ALA B 60 ALA B 63 1 O ALA B 60 N CYS B 41 SHEET 4 B 9 TRP B 90 LEU B 93 1 O VAL B 92 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 B 9 VAL B 160 TYR B 164 1 O VAL B 161 N ALA B 125 SHEET 7 B 9 ILE B 206 TYR B 208 1 O ILE B 207 N LEU B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 11 1 N GLY B 9 O VAL B 231
CISPEP 1 PRO B 2 SER B 3 0 24.38
CRYST1 65.159 72.035 93.252 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015347 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013882 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010724 0.00000