10 20 30 40 50 60 70 80 1R2P - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 29-SEP-03 1R2P
TITLE SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II TITLE 2 INTRON
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 34-MER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 5 OF THE AI5(GAMMA) GROUP II INTRON; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN SACCHAROMYCES SOURCE 4 CEREVISIAE (BAKER'S YEAST) AND WAS SYNTHESIZED IN VITRO SOURCE 5 USING T7 RNA POLYMERASE AND SYNTHETIC DNA OLIGONUCLEOTIDES.
KEYWDS RNA HAIRPIN, TETRALOOP, BULGE, METAL ION, MAGNESIUM
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR R.K.O.SIGEL,D.G.SASHITAL,D.L.ABRAMOVITZ,A.G.PALMER III, AUTHOR 2 S.E.BUTCHER,A.M.PYLE
REVDAT 2 24-FEB-09 1R2P 1 VERSN REVDAT 1 03-FEB-04 1R2P 0
JRNL AUTH R.K.SIGEL,D.G.SASHITAL,D.L.ABRAMOVITZ,A.G.PALMER, JRNL AUTH 2 S.E.BUTCHER,A.M.PYLE JRNL TITL SOLUTION STRUCTURE OF DOMAIN 5 OF A GROUP II JRNL TITL 2 INTRON RIBOZYME REVEALS A NEW RNA MOTIF. JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 187 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 14745440 JRNL DOI 10.1038/NSMB717
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER ET. AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES BASED ON 678 NOE-DERIVED REMARK 3 DISTANCE RESTRAINTS, 261 DIHEDRAL RESTRAINTS, 72 HYDROGEN BOND REMARK 3 RESTRAINTS, AND 24 RESIDUAL DIPOLAR COUPLING RESTRAINTS
REMARK 4 REMARK 4 1R2P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-03. REMARK 100 THE RCSB ID CODE IS RCSB020362.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278; 298; 308; 291; 303 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100MM KCL; 100MM KCL; 100MM REMARK 210 KCL; 100MM KCL; 100MM KCL REMARK 210 PRESSURE : NULL; NULL; NULL; NULL; NULL REMARK 210 SAMPLE CONTENTS : 0.5 - 0.7 MM D5 RNA; 0 - REMARK 210 200MM KCL, 0 - 20 MM MGCL2, REMARK 210 0.01 MM EDTA, 90% H2O, 10% REMARK 210 D2O; 0.5 - 0.7 MM D5 RNA; 0 - REMARK 210 200MM KCL, 0 - 20 MM MGCL2, REMARK 210 0.01 MM EDTA, 99.999% D2O; 0.5 REMARK 210 - 0.7 MM D5 RNA, 13C-15N REMARK 210 LABELED; 100MM KCL, 0.01 MM REMARK 210 EDTA, 90% H2O, 10% D2O; 0.5 - REMARK 210 0.7 MM D5 RNA, 13C-15N REMARK 210 LABELED; 100MM KCL, 0.01 MM REMARK 210 EDTA, 99.999% D2O; 0.5 - 0.7 REMARK 210 MM D5 RNA, 13C-15N LABELED; REMARK 210 100MM KCL, 0.01 MM EDTA, 17 REMARK 210 MG/ML PF1 FILAMENTOUS REMARK 210 BACTERIOPHAGE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_13C-SEPARATED_ REMARK 210 NOESY, 2D 1H-13C HSQC, 2D 1H- REMARK 210 1H TOCSY, 3D 1H-13C-1H HCCH REMARK 210 TOCSY, 3D 1H-13C-1H HCCH COSY, REMARK 210 2D 2JHN HNN-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, DYANA, SPARKY 3, REMARK 210 XWINNMR 2.6 REMARK 210 METHOD USED : TORSION ANGLE MOLECULAR REMARK 210 DYNAMICS CARTESIAN SPACE REMARK 210 SIMULATED ANNEALING AND REMARK 210 MOLECULAR DYNAMICS RESIDUAL REMARK 210 DIPOLAR COUPLINGS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: RESIDUAL DIPOLAR COUPLINGS WERE MEASURED USING 1H-13C REMARK 210 HSQC COUPLED IN EITHER THE PROTON OR THE CARBON DIMENSION
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 G A 15 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5962 RELATED DB: BMRB REMARK 900 NMR DATA: CHEMICAL SHIFTS OF DOMAIN 5 REMARK 900 RELATED ID: 1KXK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DOMAIN5 / DOMAIN 6 CONSTRUCT FROM REMARK 900 AI5GAMMA
DBREF 1R2P A 1 34 PDB 1R2P 1R2P 1 34
SEQRES 1 A 34 G A G C C G U A U G C G A SEQRES 2 A 34 U G A A A G U C G C A C G SEQRES 3 A 34 U A C G G U U C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000