10 20 30 40 50 60 70 80 1R1F - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 23-SEP-03 1R1F
TITLE SOLUTION STRUCTURE OF THE CYCLOTIDE PALICOUREIN: TITLE 2 IMPLICATIONS FOR THE DEVELOPMENT OF PHARMACEUTICAL AND TITLE 3 AGRICULTURAL APPLICATIONS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALICOUREIN; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PALICOUREA CONDENSATA; SOURCE 3 ORGANISM_TAXID: 272141
KEYWDS PALICOUREIN, CYCLOTIDE, PLANT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.G.BARRY,N.L.DALY,H.R.BOKESCH,K.R.GUSTAFSON,D.J.CRAIK
REVDAT 2 24-FEB-09 1R1F 1 VERSN REVDAT 1 06-APR-04 1R1F 0
JRNL AUTH D.G.BARRY,N.L.DALY,H.R.BOKESCH,K.R.GUSTAFSON, JRNL AUTH 2 D.J.CRAIK JRNL TITL SOLUTION STRUCTURE OF THE CYCLOTIDE PALICOUREIN: JRNL TITL 2 IMPLICATIONS FOR THE DEVELOPMENT OF A JRNL TITL 3 PHARMACEUTICAL FRAMEWORK. JRNL REF STRUCTURE V. 12 85 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 14725768 JRNL DOI 10.1016/J.STR.2003.11.019
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1R1F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020320.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNLABELLED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY, E-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX, A REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 2 89.64 79.08 REMARK 500 1 ARG A 8 -129.32 -91.14 REMARK 500 1 ILE A 10 67.41 -159.06 REMARK 500 1 PRO A 11 -163.09 -66.28 REMARK 500 1 ASP A 25 121.66 62.18 REMARK 500 1 ARG A 26 43.71 -152.76 REMARK 500 1 SER A 27 -20.66 82.52 REMARK 500 1 ASP A 28 146.81 -179.26 REMARK 500 1 LEU A 30 125.99 -173.74 REMARK 500 1 ARG A 33 -150.47 -79.10 REMARK 500 1 ASP A 36 51.01 -144.22 REMARK 500 2 PHE A 2 105.15 -43.68 REMARK 500 2 ARG A 8 -121.61 -72.48 REMARK 500 2 ILE A 10 70.57 -168.31 REMARK 500 2 PRO A 11 -158.11 -66.96 REMARK 500 2 VAL A 12 68.82 64.29 REMARK 500 2 CYS A 13 106.00 -52.40 REMARK 500 2 CYS A 23 -145.34 -92.33 REMARK 500 2 ASP A 24 -54.90 -151.12 REMARK 500 2 ASP A 25 126.17 60.89 REMARK 500 2 ARG A 26 44.05 -152.77 REMARK 500 2 ASP A 28 154.64 173.37 REMARK 500 2 ARG A 33 -145.55 -77.53 REMARK 500 2 ASP A 36 56.68 -151.67 REMARK 500 3 PHE A 2 99.66 -35.54 REMARK 500 3 ARG A 8 -100.47 -66.40 REMARK 500 3 PRO A 11 -154.15 -68.09 REMARK 500 3 VAL A 12 80.32 64.04 REMARK 500 3 CYS A 13 106.52 -51.46 REMARK 500 3 CYS A 23 -144.87 -92.10 REMARK 500 3 ASP A 25 115.91 63.31 REMARK 500 3 ARG A 26 52.70 -170.45 REMARK 500 3 SER A 27 -9.22 83.62 REMARK 500 3 ASP A 28 168.25 175.05 REMARK 500 3 ARG A 33 -143.53 -78.66 REMARK 500 3 ASP A 36 57.79 -148.19 REMARK 500 4 PHE A 2 105.00 -46.64 REMARK 500 4 ARG A 8 -91.13 -76.27 REMARK 500 4 PRO A 11 -143.23 -68.94 REMARK 500 4 VAL A 12 75.52 42.73 REMARK 500 4 CYS A 13 101.90 -47.37 REMARK 500 4 CYS A 21 109.29 -56.75 REMARK 500 4 CYS A 23 -139.80 -92.12 REMARK 500 4 ASP A 24 -54.91 -136.39 REMARK 500 4 ASP A 25 105.87 54.75 REMARK 500 4 ARG A 26 53.46 -168.15 REMARK 500 4 SER A 27 -4.84 82.96 REMARK 500 4 ASP A 28 -176.10 179.26 REMARK 500 4 LEU A 30 121.90 179.94 REMARK 500 4 ARG A 33 -162.40 -78.10 REMARK 500 4 ASP A 36 59.82 -145.25 REMARK 500 5 PHE A 2 107.07 -51.53 REMARK 500 5 CYS A 3 -70.89 -54.19 REMARK 500 5 ARG A 8 -88.74 -85.63 REMARK 500 5 PRO A 11 -156.49 -65.99 REMARK 500 5 VAL A 12 71.54 62.99 REMARK 500 5 CYS A 13 104.59 -50.96 REMARK 500 5 CYS A 21 95.92 34.31 REMARK 500 5 ASP A 25 113.72 53.30 REMARK 500 5 ARG A 26 45.63 -140.32 REMARK 500 5 SER A 27 11.09 80.55 REMARK 500 5 ASP A 28 134.38 170.67 REMARK 500 5 ARG A 33 -154.29 -77.23 REMARK 500 6 PHE A 2 99.64 -51.52 REMARK 500 6 ARG A 8 -123.40 -70.64 REMARK 500 6 ILE A 10 68.61 -163.03 REMARK 500 6 PRO A 11 -153.44 -64.97 REMARK 500 6 VAL A 12 79.55 60.93 REMARK 500 6 CYS A 13 103.70 -48.82 REMARK 500 6 CYS A 23 -135.14 -93.00 REMARK 500 6 ASP A 25 110.34 62.81 REMARK 500 6 ARG A 26 -44.46 -177.04 REMARK 500 6 SER A 27 47.22 -158.55 REMARK 500 6 ASP A 28 -156.66 78.07 REMARK 500 6 LEU A 30 124.60 -174.99 REMARK 500 6 ARG A 33 -141.54 -78.00 REMARK 500 6 ASP A 36 57.15 -150.96 REMARK 500 7 PHE A 2 105.01 -49.16 REMARK 500 7 ARG A 8 -89.13 -57.50 REMARK 500 7 PRO A 11 -161.49 -64.56 REMARK 500 7 VAL A 12 79.74 69.91 REMARK 500 7 CYS A 13 103.14 -51.40 REMARK 500 7 ASP A 25 137.70 66.68 REMARK 500 7 ARG A 26 116.44 85.91 REMARK 500 7 ASP A 28 -65.25 73.00 REMARK 500 7 LEU A 30 135.37 179.23 REMARK 500 7 ARG A 33 -155.32 -78.16 REMARK 500 7 ASP A 36 56.95 -144.88 REMARK 500 8 PHE A 2 100.82 -53.09 REMARK 500 8 ARG A 8 -104.01 -76.20 REMARK 500 8 PRO A 11 -153.84 -67.62 REMARK 500 8 VAL A 12 80.48 64.62 REMARK 500 8 CYS A 13 105.59 -51.98 REMARK 500 8 CYS A 23 -140.12 -92.12 REMARK 500 8 ASP A 25 95.96 60.15 REMARK 500 8 ARG A 26 92.08 178.10 REMARK 500 8 ASP A 28 135.48 73.21 REMARK 500 8 ARG A 33 -140.59 -78.65 REMARK 500 8 ASP A 36 51.82 -147.08 REMARK 500 9 PHE A 2 105.06 -48.49 REMARK 500 9 ARG A 8 -128.12 -67.05 REMARK 500 9 VAL A 9 32.51 -87.42 REMARK 500 9 ILE A 10 67.88 -173.20 REMARK 500 9 PRO A 11 -157.36 -63.85 REMARK 500 9 VAL A 12 71.83 56.99 REMARK 500 9 CYS A 13 101.13 -40.03 REMARK 500 9 CYS A 23 -141.94 -92.91 REMARK 500 9 ASP A 24 -53.97 -136.76 REMARK 500 9 ASP A 25 118.91 63.33 REMARK 500 9 ARG A 26 55.65 -179.33 REMARK 500 9 SER A 27 -16.78 86.94 REMARK 500 9 ASP A 28 -164.33 176.01 REMARK 500 9 LEU A 30 100.96 -169.78 REMARK 500 9 ARG A 33 -160.88 -76.70 REMARK 500 9 ASP A 36 56.80 -141.82 REMARK 500 10 CYS A 3 -141.37 -67.19 REMARK 500 10 ARG A 8 -129.47 -90.62 REMARK 500 10 ILE A 10 68.31 -160.92 REMARK 500 10 PRO A 11 -155.49 -71.12 REMARK 500 10 VAL A 12 71.29 58.12 REMARK 500 10 ASP A 25 135.67 61.30 REMARK 500 10 ARG A 26 52.37 -162.11 REMARK 500 10 SER A 27 37.69 71.30 REMARK 500 10 ASP A 28 141.79 116.73 REMARK 500 10 ARG A 33 -152.12 -77.06 REMARK 500 10 ASP A 36 56.95 -144.82 REMARK 500 11 PHE A 2 105.27 -52.24 REMARK 500 11 ARG A 8 -115.61 -75.00 REMARK 500 11 ILE A 10 69.48 -159.33 REMARK 500 11 PRO A 11 -166.86 -60.02 REMARK 500 11 VAL A 12 68.81 67.50 REMARK 500 11 CYS A 13 100.78 -40.52 REMARK 500 11 CYS A 23 -143.98 -92.01 REMARK 500 11 ASP A 25 125.46 65.69 REMARK 500 11 ARG A 26 52.75 -162.83 REMARK 500 11 SER A 27 49.00 70.67 REMARK 500 11 ASP A 28 93.45 97.17 REMARK 500 11 ARG A 33 -153.81 -78.52 REMARK 500 11 ASP A 36 53.19 -143.76 REMARK 500 12 PHE A 2 97.34 82.98 REMARK 500 12 ARG A 8 -86.63 -90.59 REMARK 500 12 PRO A 11 -156.50 -66.78 REMARK 500 12 VAL A 12 69.97 62.14 REMARK 500 12 CYS A 23 135.39 -39.49 REMARK 500 12 ASP A 24 -81.05 -88.74 REMARK 500 12 ASP A 25 127.64 71.96 REMARK 500 12 ARG A 26 48.70 -158.62 REMARK 500 12 SER A 27 3.42 84.17 REMARK 500 12 ASP A 28 142.58 176.98 REMARK 500 12 ARG A 33 -133.20 -77.35 REMARK 500 12 ASP A 36 56.26 -154.15 REMARK 500 13 PHE A 2 99.19 -36.23 REMARK 500 13 ARG A 8 -94.63 -78.02 REMARK 500 13 PRO A 11 -153.10 -68.05 REMARK 500 13 VAL A 12 78.88 68.97 REMARK 500 13 CYS A 13 100.44 -58.76 REMARK 500 13 ASP A 25 128.67 57.78 REMARK 500 13 ARG A 26 43.42 -149.37 REMARK 500 13 ASP A 28 131.29 167.75 REMARK 500 13 ARG A 33 -144.83 -78.08 REMARK 500 13 ASP A 36 59.54 -146.76 REMARK 500 14 PHE A 2 104.14 -50.68 REMARK 500 14 ARG A 8 -110.40 -73.15 REMARK 500 14 PRO A 11 -152.73 -69.53 REMARK 500 14 VAL A 12 77.28 62.20 REMARK 500 14 CYS A 13 100.92 -54.59 REMARK 500 14 CYS A 21 109.91 -52.22 REMARK 500 14 CYS A 23 -130.80 -92.09 REMARK 500 14 ASP A 24 -48.04 -149.74 REMARK 500 14 ASP A 25 92.95 50.31 REMARK 500 14 ARG A 26 -117.44 -155.41 REMARK 500 14 ASP A 28 140.01 79.90 REMARK 500 14 ARG A 33 -161.54 -78.20 REMARK 500 15 PHE A 2 104.30 -44.24 REMARK 500 15 ARG A 8 -100.95 -90.40 REMARK 500 15 ILE A 10 65.50 -157.19 REMARK 500 15 PRO A 11 -159.69 -65.36 REMARK 500 15 VAL A 12 68.91 67.25 REMARK 500 15 CYS A 13 106.57 -56.33 REMARK 500 15 ASP A 24 -64.81 -106.57 REMARK 500 15 ASP A 25 138.38 74.11 REMARK 500 15 ARG A 26 -46.74 -155.27 REMARK 500 15 SER A 27 51.87 -152.25 REMARK 500 15 ASP A 28 85.95 84.44 REMARK 500 15 LEU A 30 131.26 -172.91 REMARK 500 15 ARG A 33 -157.40 -78.48 REMARK 500 15 ASP A 36 50.67 -143.00 REMARK 500 16 PHE A 2 100.39 -32.73 REMARK 500 16 ARG A 8 -85.78 -90.09 REMARK 500 16 PRO A 11 -144.19 -64.44 REMARK 500 16 VAL A 12 70.71 45.22 REMARK 500 16 CYS A 13 106.70 -56.63 REMARK 500 16 CYS A 21 136.22 62.40 REMARK 500 16 CYS A 23 126.17 -33.39 REMARK 500 16 ASP A 24 -77.09 -89.23 REMARK 500 16 ASP A 25 121.31 74.31 REMARK 500 16 ARG A 26 75.05 -175.91 REMARK 500 16 SER A 27 41.76 73.78 REMARK 500 16 ASP A 28 140.62 92.50 REMARK 500 16 LEU A 30 137.66 -172.65 REMARK 500 16 ARG A 33 -147.89 -76.57 REMARK 500 16 ASP A 36 57.18 -146.74 REMARK 500 17 PHE A 2 98.19 85.20 REMARK 500 17 ARG A 8 -120.18 -65.75 REMARK 500 17 ILE A 10 71.36 -171.29 REMARK 500 17 PRO A 11 -150.19 -59.79 REMARK 500 17 CYS A 13 88.50 -29.09 REMARK 500 17 CYS A 23 -124.96 -92.09 REMARK 500 17 ASP A 24 -52.98 -136.73 REMARK 500 17 ASP A 25 106.23 61.54 REMARK 500 17 ARG A 26 61.19 -168.46 REMARK 500 17 SER A 27 42.74 76.54 REMARK 500 17 ASP A 28 171.41 73.69 REMARK 500 17 LEU A 30 128.23 172.33 REMARK 500 17 ARG A 33 -153.84 -79.74 REMARK 500 17 ASP A 36 56.76 -144.64 REMARK 500 18 PHE A 2 100.64 -39.71 REMARK 500 18 ARG A 8 -92.32 -90.00 REMARK 500 18 PRO A 11 -152.52 -67.28 REMARK 500 18 VAL A 12 71.65 62.89 REMARK 500 18 CYS A 13 105.59 -56.91 REMARK 500 18 CYS A 21 131.37 62.49 REMARK 500 18 CYS A 23 135.06 -36.25 REMARK 500 18 ASP A 24 -78.59 -87.95 REMARK 500 18 ASP A 25 114.46 69.96 REMARK 500 18 ARG A 26 -49.05 -154.22 REMARK 500 18 SER A 27 45.44 -152.96 REMARK 500 18 ASP A 28 143.00 84.76 REMARK 500 18 ARG A 33 -147.31 -77.40 REMARK 500 19 PHE A 2 108.31 -43.71 REMARK 500 19 CYS A 3 -176.43 -61.63 REMARK 500 19 ARG A 8 -119.82 -67.48 REMARK 500 19 PRO A 11 -149.92 -70.32 REMARK 500 19 VAL A 12 78.27 67.53 REMARK 500 19 CYS A 23 -141.38 -92.54 REMARK 500 19 ASP A 24 -64.37 -140.19 REMARK 500 19 ASP A 25 124.08 68.30 REMARK 500 19 ARG A 26 114.32 123.71 REMARK 500 19 SER A 27 -41.46 79.39 REMARK 500 19 ASP A 28 -141.83 176.54 REMARK 500 19 LEU A 30 117.16 175.01 REMARK 500 19 ARG A 33 -164.37 -76.65 REMARK 500 19 ASP A 36 54.78 -144.26 REMARK 500 20 PHE A 2 106.06 -48.53 REMARK 500 20 CYS A 3 -71.53 -50.13 REMARK 500 20 ARG A 8 -114.80 -88.01 REMARK 500 20 ILE A 10 68.35 -166.57 REMARK 500 20 PRO A 11 -149.18 -71.90 REMARK 500 20 VAL A 12 75.55 62.20 REMARK 500 20 CYS A 13 109.30 -57.45 REMARK 500 20 CYS A 21 128.91 61.56 REMARK 500 20 ASP A 25 118.95 67.18 REMARK 500 20 ARG A 26 -132.06 -151.26 REMARK 500 20 LEU A 30 135.97 -170.86 REMARK 500 20 ARG A 33 -157.42 -77.01 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NB1 RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF KALATA B1 REMARK 900 RELATED ID: 1NBJ RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF CYCLOVIOLACIN O1
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT DEPOSITED REMARK 999 INTO ANY SEQUENCE DATABASE.
DBREF 1R1F A 1 34 UNP P84645 PALIC_PALCO 4 37
SEQRES 1 A 37 THR PHE CYS GLY GLU THR CYS ARG VAL ILE PRO VAL CYS SEQRES 2 A 37 THR TYR SER ALA ALA LEU GLY CYS THR CYS ASP ASP ARG SEQRES 3 A 37 SER ASP GLY LEU CYS LYS ARG ASN GLY ASP PRO
HELIX 1 1 TYR A 15 GLY A 20 5 6
SSBOND 1 CYS A 3 CYS A 21 1555 1555 2.03 SSBOND 2 CYS A 7 CYS A 23 1555 1555 2.03 SSBOND 3 CYS A 13 CYS A 31 1555 1555 2.02
LINK N THR A 1 C PRO A 37 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000