1QVX - Header Asymmetric Unit

HEADER TRANSFERASE 29-AUG-03 1QVX

TITLE SOLUTION STRUCTURE OF THE FAT DOMAIN OF FOCAL ADHESION TITLE 2 KINASE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAT DOMAIN (RESIDUES 920-1053); COMPND 5 SYNONYM: FADK 1, PP125FAK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: FAK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX

KEYWDS FOCAL ADHESION KINASE, FAK, FOCAL ADHENSION TARGETING KEYWDS 2 DOMAIN, FAT, NMR, HELIX BUNDLE, TRANSFERASE

EXPDTA SOLUTION NMR

NUMMDL 25

AUTHOR G.GAO,K.C.PRUTZMAN,M.L.KING,E.F.DEROSE,R.E.LONDON, AUTHOR 2 M.D.SCHALLER,S.L.CAMPBELL

REVDAT 2 24-FEB-09 1QVX 1 VERSN REVDAT 1 02-MAR-04 1QVX 0

JRNL AUTH G.GAO,K.C.PRUTZMAN,M.L.KING,D.M.SCHESWOHL, JRNL AUTH 2 E.F.DEROSE,R.E.LONDON,M.D.SCHALLER,S.L.CAMPBELL JRNL TITL NMR SOLUTION STRUCTURE OF THE FOCAL ADHESION JRNL TITL 2 TARGETING DOMAIN OF FOCAL ADHESION KINASE IN JRNL TITL 3 COMPLEX WITH A PAXILLIN LD PEPTIDE: EVIDENCE FOR A JRNL TITL 4 TWO-SITE BINDING MODEL. JRNL REF J.BIOL.CHEM. V. 279 8441 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14662767 JRNL DOI 10.1074/JBC.M309808200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

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

REMARK 4 REMARK 4 1QVX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020133.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6MM 13C,15N LABELED FAT REMARK 210 WITH 4.8MM LD2 PEPTIDE, 25MM REMARK 210 TRIS-MALEATE, 0.1% NAN3, 1.0UM REMARK 210 PPACK, 0.5MG/ML PEFABLOC, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D SIMULTANEOUS 13C/15N REMARK 210 EDITED NOESY, 3D CBCA(CO)NH, REMARK 210 3D HNCA, 3D HNCACB, 3D H(CCO)- REMARK 210 TOCSY-NNH, 3D (H)C(CO)-TOCSY- REMARK 210 NNH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, VNMR 6.1, REMARK 210 NMRVIEW 5.0.4 REMARK 210 METHOD USED : THE PROGRAM CNS VERSION 1.1 REMARK 210 WITH ARIA VERSION 1.2 MODULE REMARK 210 WAS USED TO CALCULATE THE REMARK 210 STRUCTURES OF THE AVIAN FAT REMARK 210 DOMAIN. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: AROMATIC SIDECHAIN ASSIGNMENTS WERE OBTAINED FROM 2D REMARK 210 (HB)CB(CGCDCE)HE AND 2D (HB)CB(CGCD)HD EXPERIMENTS. 1H-15N REMARK 210 RESIDUAL DIPOLAR COUPLING VALUES WERE MEASURED USING 7.5 MG/ML REMARK 210 PF1 PHAGE AS ALIGNING MEDIUM

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 922 82.02 -67.32 REMARK 500 1 ASP A 923 -174.84 -46.23 REMARK 500 1 LYS A 924 -19.38 -42.97 REMARK 500 1 SER A 979 -32.31 -165.76 REMARK 500 1 VAL A1009 115.94 -28.95 REMARK 500 1 MET A1010 -82.55 -99.25 REMARK 500 1 THR A1011 -82.07 -155.83 REMARK 500 1 SER A1050 32.07 -94.89 REMARK 500 2 ASP A 923 -171.63 -46.77 REMARK 500 2 LYS A 924 -21.16 -36.40 REMARK 500 2 SER A 979 -32.76 -161.38 REMARK 500 2 TYR A1008 -76.87 -74.04 REMARK 500 2 VAL A1009 77.08 32.33 REMARK 500 2 MET A1010 -103.71 -139.60 REMARK 500 2 ARG A1051 98.24 -173.39 REMARK 500 2 PRO A1052 -71.87 -67.46 REMARK 500 3 SER A 921 47.48 -82.49 REMARK 500 3 ASN A 922 72.03 46.84 REMARK 500 3 ASP A 923 -175.50 -45.44 REMARK 500 3 SER A 979 -26.43 179.63 REMARK 500 3 VAL A1009 97.75 -46.17 REMARK 500 4 ASP A 923 -173.54 -47.33 REMARK 500 4 LYS A 924 -25.05 -37.78 REMARK 500 4 SER A 979 -39.86 -168.74 REMARK 500 5 ASP A 923 -174.81 -47.05 REMARK 500 5 PRO A 945 34.80 -97.37 REMARK 500 5 SER A 979 -42.04 -162.70 REMARK 500 5 VAL A1009 67.25 34.39 REMARK 500 5 ARG A1051 92.70 63.44 REMARK 500 6 ASP A 923 -171.93 -47.68 REMARK 500 6 LYS A 924 -26.90 -27.92 REMARK 500 6 PRO A 945 31.59 -99.89 REMARK 500 6 SER A 979 -39.03 -163.90 REMARK 500 6 MET A1010 -78.50 -132.49 REMARK 500 6 THR A1011 -97.74 -144.19 REMARK 500 7 ASP A 923 -174.02 -45.58 REMARK 500 7 LYS A 924 -14.18 -44.82 REMARK 500 7 PRO A 948 -15.56 -48.69 REMARK 500 7 SER A 979 -38.32 -169.33 REMARK 500 7 HIS A 981 -18.84 -48.60 REMARK 500 7 VAL A1009 78.54 34.15 REMARK 500 7 SER A1050 29.56 -176.35 REMARK 500 8 ASP A 923 -173.27 -47.01 REMARK 500 8 LYS A 924 -22.74 -39.01 REMARK 500 8 SER A 979 -48.64 -162.57 REMARK 500 8 SER A1012 -47.21 -135.32 REMARK 500 8 ARG A1051 106.44 66.03 REMARK 500 8 PRO A1052 -82.55 -77.24 REMARK 500 9 ASP A 923 -173.92 -47.87 REMARK 500 9 LYS A 924 -19.76 -39.27 REMARK 500 9 SER A 979 -34.20 -166.56 REMARK 500 9 VAL A1009 59.23 35.39 REMARK 500 9 THR A1011 -94.60 56.66 REMARK 500 9 ARG A1051 152.95 68.48 REMARK 500 10 ASP A 923 -173.17 -47.26 REMARK 500 10 LYS A 924 -17.38 -40.27 REMARK 500 10 SER A 979 -49.01 -160.82 REMARK 500 10 VAL A1009 40.63 37.13 REMARK 500 10 THR A1011 120.54 55.70 REMARK 500 10 SER A1012 -59.06 73.39 REMARK 500 11 SER A 921 -1.71 68.92 REMARK 500 11 ASN A 922 74.66 64.77 REMARK 500 11 ASP A 923 -173.77 -48.88 REMARK 500 11 LYS A 924 -14.52 -41.08 REMARK 500 11 PRO A 945 30.22 -95.24 REMARK 500 11 SER A 979 -36.36 -165.49 REMARK 500 11 VAL A1009 37.18 38.76 REMARK 500 11 THR A1011 -95.68 44.47 REMARK 500 11 ARG A1051 133.39 73.02 REMARK 500 12 SER A 921 -0.24 73.53 REMARK 500 12 ASP A 923 -171.78 -45.10 REMARK 500 12 LYS A 924 -21.44 -34.90 REMARK 500 12 SER A 979 -33.11 -171.58 REMARK 500 12 VAL A1009 116.93 -28.93 REMARK 500 12 MET A1010 164.22 81.34 REMARK 500 12 THR A1011 74.85 76.41 REMARK 500 12 SER A1012 -70.33 64.25 REMARK 500 13 ASP A 923 -175.15 -46.52 REMARK 500 13 LYS A 924 -24.76 -33.06 REMARK 500 13 SER A 979 -50.22 -163.45 REMARK 500 13 SER A1012 -34.06 74.46 REMARK 500 13 ARG A1051 82.30 54.32 REMARK 500 14 SER A 921 39.88 -75.73 REMARK 500 14 ASP A 923 -173.97 -47.02 REMARK 500 14 LYS A 924 -12.11 -46.54 REMARK 500 14 PRO A 948 -18.37 -47.59 REMARK 500 14 SER A 979 -35.28 -163.46 REMARK 500 14 VAL A1009 94.90 -57.70 REMARK 500 14 THR A1011 -92.02 58.76 REMARK 500 14 PRO A1052 44.07 -72.51 REMARK 500 15 ASP A 923 -175.05 -47.80 REMARK 500 15 LYS A 924 -21.02 -37.00 REMARK 500 15 SER A 979 -27.27 -165.46 REMARK 500 15 VAL A1009 125.08 -30.40 REMARK 500 15 SER A1012 -41.52 75.24 REMARK 500 15 SER A1050 -9.34 -159.46 REMARK 500 15 ARG A1051 99.14 59.80 REMARK 500 16 ASN A 922 72.33 55.65 REMARK 500 16 ASP A 923 -174.75 -46.63 REMARK 500 16 LYS A 924 -8.05 -46.90 REMARK 500 16 SER A 979 -35.38 -166.11 REMARK 500 16 VAL A1009 88.70 -61.18 REMARK 500 16 THR A1011 -89.44 61.36 REMARK 500 17 SER A 921 39.22 -80.45 REMARK 500 17 ASP A 923 -171.46 -47.24 REMARK 500 17 LYS A 924 -8.54 -42.04 REMARK 500 17 SER A 979 -37.80 -171.11 REMARK 500 17 VAL A1009 85.91 -52.95 REMARK 500 17 THR A1011 -110.10 39.54 REMARK 500 17 SER A1050 5.95 -160.36 REMARK 500 17 ARG A1051 71.72 52.82 REMARK 500 17 PRO A1052 41.84 -82.02 REMARK 500 18 ASP A 923 -175.31 -47.33 REMARK 500 18 LYS A 924 -24.09 -35.51 REMARK 500 18 PRO A 948 -16.29 -48.40 REMARK 500 18 SER A 979 -36.76 -157.99 REMARK 500 18 VAL A1009 106.71 -47.36 REMARK 500 18 SER A1012 -46.53 76.30 REMARK 500 18 ARG A1051 106.64 63.05 REMARK 500 18 PRO A1052 35.36 -82.18 REMARK 500 19 ASP A 923 -176.17 -46.01 REMARK 500 19 LYS A 924 -24.82 -36.59 REMARK 500 19 SER A 979 -34.43 -165.35 REMARK 500 19 VAL A1009 95.47 -58.76 REMARK 500 19 THR A1011 131.27 68.28 REMARK 500 19 SER A1012 -60.61 71.29 REMARK 500 19 GLN A1049 -71.15 -60.03 REMARK 500 19 SER A1050 -2.24 -153.66 REMARK 500 19 ARG A1051 124.46 61.18 REMARK 500 20 ASP A 923 -171.60 -44.62 REMARK 500 20 LYS A 924 -17.72 -38.09 REMARK 500 20 SER A 979 -47.64 -163.30 REMARK 500 20 THR A1011 -99.77 40.91 REMARK 500 20 PRO A1052 -75.29 -72.28 REMARK 500 21 SER A 921 105.37 71.27 REMARK 500 21 ASN A 922 85.44 -53.53 REMARK 500 21 ASP A 923 -174.70 -47.16 REMARK 500 21 GLU A 949 0.70 -52.50 REMARK 500 21 SER A 979 -36.73 -171.34 REMARK 500 21 HIS A 981 -19.59 -48.46 REMARK 500 21 SER A1012 -39.10 77.49 REMARK 500 22 ASN A 922 78.15 55.67 REMARK 500 22 ASP A 923 -169.01 -55.03 REMARK 500 22 LYS A 924 -25.24 -25.38 REMARK 500 22 SER A 979 -42.62 -161.07 REMARK 500 22 VAL A1009 109.46 -36.32 REMARK 500 22 MET A1010 -75.34 -100.83 REMARK 500 22 THR A1011 125.61 178.13 REMARK 500 22 SER A1012 -49.96 70.51 REMARK 500 22 ARG A1051 -88.09 88.34 REMARK 500 23 ASN A 922 84.19 -64.29 REMARK 500 23 ASP A 923 -174.18 -47.04 REMARK 500 23 LYS A 924 -27.02 -36.03 REMARK 500 23 SER A 979 -26.95 -170.73 REMARK 500 23 VAL A1009 102.64 -49.91 REMARK 500 23 THR A1011 -104.55 46.28 REMARK 500 24 ASN A 922 87.28 -11.61 REMARK 500 24 ASP A 923 -173.40 -47.22 REMARK 500 24 LYS A 924 -24.70 -37.25 REMARK 500 24 SER A 979 -6.55 -167.94 REMARK 500 24 VAL A1009 108.99 -53.47 REMARK 500 24 SER A1012 -49.10 74.38 REMARK 500 25 ASP A 923 -175.19 -46.56 REMARK 500 25 LYS A 924 -25.23 -34.33 REMARK 500 25 SER A 979 -33.24 -169.02 REMARK 500 25 MET A1010 57.09 -150.80 REMARK 500 25 THR A1011 -93.54 50.52 REMARK 500 25 SER A1050 -70.85 -76.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1012 LEU A 1013 2 -149.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 ARG A1043 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5924 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS

DBREF 1QVX A 920 1053 UNP Q00944 FAK1_CHICK 920 1053

SEQRES 1 A 134 ARG SER ASN ASP LYS VAL TYR GLU ASN VAL THR GLY LEU SEQRES 2 A 134 VAL LYS ALA VAL ILE GLU MET SER SER LYS ILE GLN PRO SEQRES 3 A 134 ALA PRO PRO GLU GLU TYR VAL PRO MET VAL LYS GLU VAL SEQRES 4 A 134 GLY LEU ALA LEU ARG THR LEU LEU ALA THR VAL ASP GLU SEQRES 5 A 134 SER LEU PRO VAL LEU PRO ALA SER THR HIS ARG GLU ILE SEQRES 6 A 134 GLU MET ALA GLN LYS LEU LEU ASN SER ASP LEU ALA GLU SEQRES 7 A 134 LEU ILE ASN LYS MET LYS LEU ALA GLN GLN TYR VAL MET SEQRES 8 A 134 THR SER LEU GLN GLN GLU TYR LYS LYS GLN MET LEU THR SEQRES 9 A 134 ALA ALA HIS ALA LEU ALA VAL ASP ALA LYS ASN LEU LEU SEQRES 10 A 134 ASP VAL ILE ASP GLN ALA ARG LEU LYS MET ILE SER GLN SEQRES 11 A 134 SER ARG PRO HIS

HELIX 1 1 ASP A 923 GLN A 944 1 22 HELIX 2 2 GLU A 950 SER A 979 1 30 HELIX 3 3 ARG A 982 VAL A 1009 1 28 HELIX 4 4 LEU A 1013 ARG A 1051 1 39

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000